KEGG   Syngnathus scovelli (Gulf pipefish): 125977262
Entry
125977262         CDS       T08785                                 
Name
(RefSeq) WD repeat-containing protein 82 isoform X2
  KO
K14962  COMPASS component SWD2
Organism
sscv  Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:sscv00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    125977262
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sscv03019]
    125977262
   03036 Chromosome and associated proteins [BR:sscv03036]
    125977262
Messenger RNA biogenesis [BR:sscv03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     125977262
Chromosome and associated proteins [BR:sscv03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     125977262
    COMPASS/SET1 complex (yeast)
     125977262
SSDB
Motif
Pfam: WD40_Prp19 WD40_WDHD1_1st WD40 Beta-prop_EML_2 WD40_CDC20-Fz Beta-prop_TEP1_2nd WDR55 EIF3I ANAPC4_WD40 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd WD40_RFWD3 WDR90_beta-prop_4th Beta-prop_TEP1_C NBCH_WD40 Beta-prop_Vps41 Beta-prop_EML Beta-prop_HPS5 Beta-prop_SPT8 Beta-prop_Nup120_160 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_WDR19_1st Beta-prop_EIPR1 Beta-prop_WDR35_TULP_N
Other DBs
NCBI-GeneID: 125977262
NCBI-ProteinID: XP_049589562
LinkDB
Position
11:complement(8996775..9003674)
AA seq 316 aa
MKITDSVLRSFRVARKYQCNSDKVNCFEYCFNGESAISSSNDDSIVLYDLTQGTPLDRPL
YSKKYGVDLIRYTFGDPEKVIYSSNKLDDTIRLLSLTNNNFIRYFSGHTAKVTALSMSPV
ARMFISASLDKTIRIWDLRTEHVQGRTEPLDRPICSYDPEGVIFGAGVDSQSIKLYDVRA
FAKGPFKSFETRLNRHCHWTRLKFSNDGKLILISTNGGMICILNAFTGDVIHKFSGYNNS
TGLNLEACFTPDSHFVMIGSEDGRVHVWSTENGMKVAVLDGKHPGPISVVQFNPLYMTFA
TACTHMKFWLPNVDDV
NT seq 951 nt   +upstreamnt  +downstreamnt
atgaaaatcacggacagcgtgttgaggagtttcagggttgcgagaaaatatcaatgcaat
tcagataaagtcaattgttttgagtattgttttaatggtgagagcgcgatttcaagcagc
aacgacgacagcattgttttgtatgatctgacccaaggaacgccgcttgatcgtccgctt
tacagcaagaagtatggagtcgacttgatccgttacacatttggagatcccgaaaaagtc
atctacagttccaacaagttggatgatacaatacgacttctgtcactaactaacaacaat
ttcatcagatacttctccggtcacactgcaaaagttacagctctctctatgtcacctgtg
gcgagaatgttcatctcggcttccttggataagacaatccgcatctgggatctacgcact
gagcatgttcagggtcgaaccgagccccttgacagacccatttgttcttatgacccggaa
ggggtcatttttggtgcaggggtcgattcacagtccattaaactgtacgatgtccgcgct
tttgccaagggtccatttaagtcctttgagacaaggctgaatcgtcactgtcactggact
agactgaagttcagtaatgatggcaaactaattctcatctctaccaatgggggaatgatc
tgcatcctcaacgctttcactggagacgtgattcacaaattttctggctacaacaacagc
acaggtttaaacctggaggcttgtttcacccccgactcgcattttgtcatgatcggctca
gaggacgggagagttcacgtttggagcacagagaacgggatgaaggtcgctgtgctggat
gggaaacatccgggacccatcagcgttgtgcaattcaacccattgtacatgacttttgcc
actgcctgcactcacatgaaattctggctcccgaatgttgacgacgtgtaa

DBGET integrated database retrieval system