Syngnathus scovelli (Gulf pipefish): 125977350
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Entry
125977350 CDS
T08785
Symbol
pdzrn3b
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3-B isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sscv04121
]
125977350 (pdzrn3b)
Enzymes [BR:
sscv01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125977350 (pdzrn3b)
Ubiquitin system [BR:
sscv04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
125977350 (pdzrn3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-C3HC4_4
zf-RING_5
Prok-RING_4
zf-TRAF
Sina_ZnF
PDZ_Tricorn
zf-rbx1
GIY-YIG
zf-RING_6
U-box
RING_XB3-XBAT31
IBR_1
Motif
Other DBs
NCBI-GeneID:
125977350
NCBI-ProteinID:
XP_049589711
LinkDB
All DBs
Position
11:3382516..3428368
Genome browser
AA seq
1039 aa
AA seq
DB search
MGYELDRFSGTVDPDLKCNLCNKVLEDPLTTPCGHVFCSGCVLPWVVQQSSCPVKCQRIS
SKELNHVLPLKNLILKLEIKCDNHVRGCDVVVKLQHLAEHAGMCDYSPAKCGNKGCDEVL
SLRDVDAHMRETCEFRAAGICERGCGLTLTLKEKRLNEHCCVRALKAHNGVLQYKMMCLD
SEFKKQTIEANKREKALLAQLSAAHAELQMTAVKYQKKFAEYSERIDSLTRTVTFSCKVR
DTKNVEVVLLREGGSLGFNIMGGKPSVDDHDSATTEGIFVSKIIENGPADKEDGLQMHDR
IIEVNGRDLSKATHDQAVEAFRTAKDPIMVQVLRRAPLPKLVSSPTADNHLTDISTQTEI
TLQHIMPLANLPATSPPGTVLQEYLLAEERPSGHEYFDPNDFLDGINHDIEREELEYEEV
DLYRANIQDKLGLTICYRTDDEDEAGIYISEIDPNSIAAQDGRIREGDKIVQINGIEIQN
REDAVVLLTSEGNQNISLLVARPQIQLDEGWLDDDRNDFLDELHMDMLEQQHHQAMQFTA
SMLQQKKHEEDGGTTDTATLLSNHHEKDSGVGRTDESTRNDESSEQENMADDHTTASNTL
SSCRKLAYSQDTLGSADLPFSGESFISADYADTDFLGIPADECERFRELLELKCQMRNGG
IQGLYSQGGGAEGQDQEVVDKELELLNEELRNIELECLNIVRAHKMQQLREQCRESWMLH
NSGFRNYNTSIDARRHELSDITEMPEKSDKDSSSAYNTGESCRSTPLTLELSPDNSLRRE
PENQAGPSSSNGSAPKSLAAPLQEVCRSKALSKDPDSLQVESKERKVGEASKPARSFAQP
RSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSMCRDAGDPGNKMEWKVKVRS
DGSRYITKRPIRDKLLRERALRIHEERSGMTTDDDAISELKMGRYWSKEERKQHAVRSKE
QRQRREFMKQSRADCLKEQVAPEDKKEPNIIELSNKKMMKKRNKKIFDNWMTIQELLTHG
TKSPDGTKVYTSLLSVTTV
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgggatacgagctggaccgcttcagtggaacagttgacccggatttgaaatgcaatctg
tgcaataaagttctggaagacccactgactactccgtgcggccacgtcttctgctctggc
tgcgttctaccttgggtcgtccagcagagcagctgtcccgtcaaatgccagcgtatctcc
tccaaagaattgaaccacgtcctgcctttgaaaaacctcatcctgaagctggagatcaaa
tgtgacaaccatgtacggggctgcgacgtggtggtgaagctgcagcacctggccgagcac
gccggcatgtgtgactactctccagccaagtgcggcaataaaggatgcgacgaggtgctc
agcctgcgggacgtggatgctcacatgcgggagacgtgcgagtttcgagcggcgggcatc
tgcgagcgcggttgcggcttgacgctcacgctcaaagagaagcgactcaatgagcactgc
tgcgtccgtgccctgaaggcgcacaacggcgtgctgcaatacaaaatgatgtgcttggat
agtgagttcaagaaacagacaattgaagccaacaagagggagaaagcgctcctggcgcaa
ctttccgccgctcacgccgagctccagatgacggcggtgaagtaccagaagaaattcgca
gagtacagcgagaggatcgactctcttactcggacggtgaccttctcctgcaaggtaaga
gatactaaaaatgtggaagttgtgcttcttcgcgagggcggatctctgggctttaacatc
atgggaggaaagccaagtgtggatgatcatgacagcgctaccaccgaggggatctttgtg
tccaaaattatcgagaatggacctgccgacaaggaggacggccttcaaatgcacgaccgg
attattgaggtcaatggcagagacctctcaaaagccacccatgaccaagcagtggaggct
ttccgtacagccaaggatcccattatggtccaagttttgcgccgggcccctctgcccaaa
ctggtctcttcccccaccgctgacaatcacctgacagatatcagcacccagactgaaatc
acccttcaacacatcatgccgcttgccaatttgccagcaacttcaccgcccgggactgtg
ctccaagagtacctccttgccgaggagcgtccttctggccatgagtactttgaccccaat
gatttcctggatgggattaatcacgacatagaacgtgaagagttagaatatgaggaggtg
gatctatacagagccaacattcaagacaagctaggcttgaccatctgttacaggactgac
gatgaggatgaagctgggatctacattagtgagattgatccaaacagcattgccgctcaa
gatggcagaattcgagaaggtgataaaatcgtccagatcaatggcatcgagatccaaaac
cgtgaagatgcagtcgtgcttctgaccagtgaaggcaaccagaatatatctctattagtt
gccagaccacagatccagctggatgagggctggctggatgacgacaggaatgacttcctg
gatgagctccacatggacatgctggagcagcagcaccatcaggccatgcagttcactgcc
agcatgctgcagcagaagaagcatgaggaagatggcggcaccactgacacagccacactt
ctctccaatcaccacgaaaaggacagcggagtcggccgtaccgacgagagcacacgcaac
gatgagagttccgagcaggagaacatggctgacgaccacacaacagcatctaacactctg
agcagctgcaggaagctcgcctacagccaggacacccttggcagcgccgacctgcctttc
agcggcgagtcgttcatctcagcagactacgccgacaccgactttctcggtatccccgcg
gatgaatgcgagcgcttccgagaactcctagagctcaagtgccaaatgaggaatggagga
atccagggcttgtatagccaaggtggcggggcagaaggtcaagaccaagaggtcgtggac
aaagagctggagcttctcaatgaggagctgcgtaacatcgagctggagtgccttaatatc
gtccgtgcccacaagatgcagcagcttcgggagcagtgtcgcgaatcctggatgctccac
aacagcggcttccggaactacaacacgagcatagacgcacggcgccatgagctctcggac
attacggagatgccggagaaatctgacaaagacagctccagtgcctacaataccggcgag
agctgccgcagcacccctcttacgttggagttgtcgccagacaactctctccgtcgtgag
cccgagaaccaagctgggccgtcgagctccaacggtagcgcgcccaaatctctcgcggcc
cctctccaagaggtctgtaggagcaaagccctttccaaggatccggattccttacaggta
gaaagcaaggagaggaaagtaggagaggccagcaaaccggcgaggagcttcgctcagcca
cgttctccttacaagcacgcacacatccccgcccacgcccagcactaccagagctacatg
cagctgatccagcagaaatccgccgtggagtacgcccaaagtcagatgagcctggtcagt
atgtgtcgagacgcaggtgacccgggcaacaagatggagtggaaggtcaaggtgcgtagc
gacggtagccgctacatcaccaagcggcccattcgggacaagctcctgcgggagcgcgcc
ctgcgcatccacgaggagcgcagcggtatgaccacggatgacgacgccatcagcgagttg
aagatgggccgctactggagcaaggaagagaggaagcaacacgccgttcgttccaaggag
cagaggcaacgtcgcgagttcatgaagcaaagccgagctgattgcctgaaggagcaggtt
gccccggaggacaagaaggagcccaatattatcgaactgagcaacaaaaagatgatgaaa
aagagaaataagaaaatatttgacaactggatgaccatccaggaactgctgacccatggt
accaaatcaccagacggcaccaaagtttacacctcgctcttgtccgtgaccacagtctaa
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