Syngnathus scovelli (Gulf pipefish): 125977408
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Entry
125977408 CDS
T08785
Symbol
gabra6a
Name
(RefSeq) gamma-aminobutyric acid receptor subunit alpha-6a
KO
K05175
gamma-aminobutyric acid receptor subunit alpha
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04080
Neuroactive ligand-receptor interaction
sscv04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
125977408 (gabra6a)
04082 Neuroactive ligand signaling
125977408 (gabra6a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sscv04040
]
125977408 (gabra6a)
Ion channels [BR:
sscv04040
]
Ligand-gated channels
GABA-A
125977408 (gabra6a)
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Gene cluster
GFIT
Motif
Pfam:
Neur_chan_LBD
Neur_chan_memb
CytochromB561_N
Beta-prop_CATSPERD
Motif
Other DBs
NCBI-GeneID:
125977408
NCBI-ProteinID:
XP_049589808
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Position
1:6315263..6326282
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AA seq
448 aa
AA seq
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MAIYLLHWIFACICGISLGNVNSNEKIYSDNITRILDRLLDGYDNRLRPGSGGGITEVKT
DIFVTSFGPVSDVEMEYTTDMFFRQMWVDERLKFEGPIEILRLNNRMVDKIWIPDTFFRN
SKKSISHNMTTPNKLFRIMQNGTVLYTMRLTISSECPMNLMDFPMDGHTCPLRFGSYAYT
SNEIAFTWRKGPIKSVDCPKESMSLLQYDLVGQTLSSEIFKSNTGHYSVQVVHFHLQRKL
GYYLIQTYIPLIMVVVLSQVSFWINKESVPARTVAGITTVLTMTTLSISARQSLPKVAYA
TAMDWFIAVCFAFVASALIEFAAVNYFATLQASRLKRTKARQEKLEVLATTSDDEDIISE
SNTSPQEGLKRRNHSMCPSEATEAPPMPIFLQQGSAFPQIPQLAGTSPIDKYARILFPLT
FGLFNLVYWYIYLAKDTMERARDVDPAS
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggccatatatttgttgcattggatttttgcctgtatctgtgggataagtctcggcaat
gtaaattcaaatgagaagatttactcagacaacatcactcgcattttggatagacttttg
gacggttatgacaatagactgcgacctggatctggaggtggcattactgaggtgaaaacc
gacatctttgtgacaagttttggacctgtgtctgatgttgagatggaatataccacggat
atgttttttcggcagatgtgggttgatgagaggctcaaatttgagggtccaattgaaatc
ctacggttgaacaatcgcatggtagacaaaatctggataccggacaccttcttccgaaat
tccaaaaaatcaatttctcacaacatgaccacacctaacaagcttttccggattatgcag
aacgggactgtactctacacaatgagactaacaataagttcagagtgtccaatgaatctt
atggacttccctatggacggacatacttgtcctcttcgatttggaagctatgcctacacc
agcaatgaaattgctttcacttggagaaaggggcctatcaagtctgttgattgtcccaaa
gagtccatgagccttttgcagtatgatctggtgggacagacgctgtccagtgagattttc
aagtccaacacaggtcactactctgtgcaggtggtccatttccatctccagaggaagctt
ggatactacctcatccagacatacattccacttatcatggttgtcgtgctgtcacaagtt
tctttctggatcaataaggagtctgtccctgcgcgtacagtcgccggcatcaccacagtg
ctaacaatgaccaccttgagtatcagcgcccgccagtcccttcccaaagtggcctatgcc
acagccatggattggttcattgccgtgtgttttgcctttgtggcatccgccctcatcgag
tttgcagcagtcaactactttgccacgctgcaagccagccgcctgaagaggacaaaagcc
agacaagaaaagctcgaggttttagctacaaccagcgacgatgaagatatcatttcggag
tctaacaccagccctcaagaaggccttaagaggagaaaccactcgatgtgccccagtgaa
gcaaccgaggcgccgcccatgccaatattccttcagcaaggctcagccttcccgcaaatc
ccacagctggctggcaccagccccatcgacaaatatgcccgcattctcttccccttgacc
ttcggactcttcaacctggtctactggtacatctacctggccaaggacaccatggagaga
gccagggatgtggatccagcctcttaa
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