Syngnathus scovelli (Gulf pipefish): 125977417
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Entry
125977417 CDS
T08785
Symbol
ppfia4
Name
(RefSeq) liprin-alpha-4 isoform X1
KO
K26226
liprin-alpha
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
125977417 (ppfia4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125977417 (ppfia4)
Membrane trafficking [BR:
sscv04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
125977417 (ppfia4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LIP-1
SAM_1
SAM_2
Motif
Other DBs
NCBI-GeneID:
125977417
NCBI-ProteinID:
XP_049589814
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All DBs
Position
11:7228998..7259611
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AA seq
1198 aa
AA seq
DB search
MMCEVMPTINEGDSAGPPRGPGSVPNGSEQEANFEQLMVNMLDERDKLLESLRETQETLI
QSQTKLQAALHERDVLQRQINAALPQEFATLTKELNICREQLLEKEEEISELKAERNNTR
LLLEHLECLVSRHERSLRMTVVKRQPPPPSGVSSEVEVLKALKSLFEHHKALDEKVRERL
RVALERVSTLEGQLSATTQELSMVRQRKDGDSVEGTDGSKPPWKRLPNGSIDVHEDGNRV
SELQELLDRTSKELAQTREHSASLNGRVAELEAELASARRELSRSEELSIKQQREQRERE
DMEERITTLEKRYLAAQRETTHIHDLNDKLENELATKDSLHRQSEEKVRQLQEMLEMAEQ
RLAQTMRKAETLPEVEAELAQRVAALSKAEERHGNVEERLRQLESQLEEKNQELGRARQR
EKMNEEHNKRLSDTVDRLLTESNERLQLHLKERMAALEDKNSLIQDLENCQKQLEEFHHT
RERLIGEIEKLRNEIDHLKRRSGAFGDGSSSHPRSHLGSASDLRFSVVEGQDGHYSTTVI
RRAQKGRLSALRDDPNKVCGMFEQDYPSLRGSVSHLLGSDMEAESDLDDDVSSAMLSPSG
QSDAQTLALMLQEQLDAINEEIRMIQVERESTDLRSDEIESRMNSGSMDGLNVTLRPRAL
PTSATAQSLASSSSPPTSGHSTPKHHARNTSHHLGIMTLPSDLRKHRRKVASPVEVDKAT
IKCETSPPSSPRSLRLETNFAQFTGSLEDGRGKQKKGIKSSIGRLFGKKEKGGRMEQTRD
FTRDGQPLPALTDFDMAVGDTMTLGKLGTQAERDRRMKKKHELLEDARKRGLPFAQWDGP
TVVSWLELWVGMPAWYVAACRANVKSGAIMSALSDTEIQREIGISNPLHRLKLRLAIQEM
VSLTSPSAPLTSRTSSGNVWVTHEEMENLASSTKAANEEGSWAQTLAYGDMNHEWIGNEW
LPSLGLPQYRSYFMECLVDARMLDHLTKKDLRSHLKMVDSFHRASLQYGIMCLKRLNYDR
KELERRREDSQHEMKDVLVWTNEQVIHWVQSIGLREYCGNLLESGVHGALVSLDETFDYS
SLALILQIPMQNTQARQVLDREFNNLLALGTDRRLEESGDDKSFRRSPSWRKRFRAREGG
AGLGMMAGSMETLPAGFRMPSMSMPPSMNLMPKKQLQPEAPPPASPRLDPSTVRTYSC
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
atgatgtgcgaagtgatgccgaccatcaacgagggggactcggccggtcccccgagagga
cccggcagcgtgccgaatggttccgagcaggaggccaacttcgagcagctgatggtcaac
atgttggacgagagagacaagctactagagtccctcagggagacccaggagaccctcatc
cagtcgcagaccaaactgcaggcggcgctgcacgagagggacgtgctgcagcgtcagatc
aacgcagccttgcctcaggagtttgccacacttaccaaggagctgaacatttgtcgagag
cagctgctggagaaagaagaggaaatatcggagctgaaagccgaaaggaacaacaccagg
ctgcttctggagcaccttgagtgtttggtgtctcgccacgagcgtagtctcaggatgacg
gttgtgaagaggcagccccccccaccatctggagtctccagtgaggtcgaggtcctcaaa
gccctcaagtcgttgtttgagcatcacaaagctctggatgaaaaggtgcgtgagaggctt
cgcgtggctctggagcgggtgtccaccctggagggacagctgtcagctaccacacaagag
ttgagcatggtgagacaaaggaaggatggtgactcggtggaagggacagatggatccaaa
cctccatggaagagactccccaacggctccatagatgttcacgaagatggcaaccgggta
tctgagcttcaggagctcctggacagaaccagtaaggaactggcacagacccgcgagcac
tccgcctcccttaacggtcgcgtggccgagctggaggccgagctggcgagcgcgcggcgg
gagttgagtcgcagtgaggagctgtcaatcaaacagcagagggagcagagagagagagaa
gacatggaggaaagaataacaacgttggaaaaacgttaccttgccgcccagcgagaaacc
acacacatccacgatctcaatgacaagctggagaacgagctggccaccaaggactccctg
cacagacagagtgaagagaaagtgcgccagctgcaggagatgctggaaatggctgagcag
aggttggctcaaactatgaggaaggctgagacgttgccagaggtggaggctgagctggca
cagcgagtagcagcactgtccaaggctgaggagcgtcatggcaacgtggaagagcggctc
agacagctggaatcacaactggaggagaagaaccaagaactaggaagggctcgtcaacgg
gagaagatgaatgaagaacacaacaaacgtttatccgacaccgttgaccgtcttctcacc
gagtccaacgaacgactgcagctccatttgaaagaacgcatggctgcactggaggacaag
aactctcttattcaagatctcgagaattgtcagaaacagttggaggaattccatcacaca
cgggaacgtctgattggcgagattgagaaactgagaaacgagattgaccatttgaaacgt
cgcagtggggcattcggagacggaagttcaagtcaccctcggtctcatttgggcagtgca
agcgaccttcgcttctctgtggtggaaggccaagatggccactacagcacgactgtgatc
aggcgggcccaaaagggcagactctcggcgctacgagatgacccaaacaaggtttgtggc
atgttcgaacaggactacccttcgctgcgagggagcgtcagccacctcctcggcagcgac
atggaggccgagtccgacctggacgacgacgtgagctcggccatgctctccccaagcggt
caatcggacgctcagaccctcgctctgatgctgcaggagcagcttgacgccatcaacgaa
gagataaggatgatccaagtggagagagagtcgactgacctgcgctcggacgagatcgag
tcccgcatgaacagcggcagcatggacggactcaacgtgacgcttcggccacgggcgctg
cccacgtcggccacggcccagtccttggcgtcgtcctcctcgccgccgaccagcggccac
tctacgcctaaacatcacgcacgcaacaccagtcatcatctaggcatcatgactctgcca
agcgacttgaggaaacaccgaagaaaagttgcatcaccggtggaggtggacaaggcgaca
atcaagtgtgaaacctcgcctccttcctcgccgcgcagtttacgtctagaaactaatttc
gcccaattcaccggcagtctggaagatggacgaggaaagcagaagaaaggtataaagtca
tcgattggccgattgtttgggaagaaggagaaggggggtcgaatggagcagaccagggat
tttaccagggatggacaacctctaccagcgttaacagactttgacatggctgttggagac
actatgacgctgggaaaactgggcacccaagcggaacgggatcgcaggatgaagaaaaaa
catgagctcctggaagacgccaggaaaagaggcttaccgtttgcgcagtgggacggtccg
acggttgtttcctggctagagctgtgggtgggcatgccagcttggtatgtggcagcatgt
cgcgctaacgtgaagagtggagccatcatgtccgccctgtcagacacagagatccagagg
gagatcggcatcagtaacccgctgcatcgactcaagctgcgcttggccatccaggagatg
gtctccctaactagcccttctgcacctctcacctccagaacgtcctccggaaatgtgtgg
gtgactcatgaagagatggagaacctggcttcatccaccaaagcggcgaatgaggagggc
agctgggcgcagacgctggcatatggagacatgaatcacgagtggatcgggaacgagtgg
ttgccaagccttggcttgcctcagtatcgctcctatttcatggaatgtctggtggacgct
cgtatgctggaccacctgaccaaaaaagacctgaggagtcatctcaagatggtggacagc
ttccacagggcgagtctgcagtatgggatcatgtgcttgaagagactcaattatgacagg
aaagaattggagcgccggagagaggacagccaacatgaaatgaaagatgtgttggtgtgg
accaacgagcaagtgatccactgggtccagtccatcggtttgagggagtactgcggcaac
ctgttggagagcggcgttcacggagcgctcgtctctctggacgagaccttcgactacagc
agcctggccctcatcctccaaattcccatgcagaacacacaggcacggcaggttctggac
agggagttcaacaacctgctagccttggggactgaccgacgactcgaggagagcggagac
gacaagtcgtttcgccgctctccatcgtggcggaagaggtttcgggcccgagagggaggg
gcggggctggggatgatggcgggctccatggaaacgctgcccgctggcttccgcatgccc
tccatgtccatgccgccctcaatgaacctcatgcccaaaaagcagctccagcctgaagct
ccgcccccggcgtccccgaggctcgacccctcaacagtgcggacctactcatgctaa
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