Syngnathus scovelli (Gulf pipefish): 125977499
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Entry
125977499 CDS
T08785
Symbol
tubb1
Name
(RefSeq) tubulin beta-1 chain isoform X1
KO
K07375
tubulin beta
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04145
Phagosome
sscv04540
Gap junction
sscv04814
Motor proteins
sscv05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
125977499 (tubb1)
09142 Cell motility
04814 Motor proteins
125977499 (tubb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sscv03036
]
125977499 (tubb1)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
sscv04812
]
125977499 (tubb1)
04147 Exosome [BR:
sscv04147
]
125977499 (tubb1)
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Other tubulins
125977499 (tubb1)
Cytoskeleton proteins [BR:
sscv04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulins
125977499 (tubb1)
Exosome [BR:
sscv04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
125977499 (tubb1)
Exosomal proteins of colorectal cancer cells
125977499 (tubb1)
Exosomal proteins of bladder cancer cells
125977499 (tubb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tubulin
Tubulin_C
Tubulin_2
Tubulin_3
Misat_Tub_SegII
Motif
Other DBs
NCBI-GeneID:
125977499
NCBI-ProteinID:
XP_049589986
LinkDB
All DBs
Position
11:complement(10901907..10905299)
Genome browser
AA seq
494 aa
AA seq
DB search
MREIVHLQIGQCGNQIGSKFWEVISAEHGISKTGIYEGDSTVQLDRVNVYFNEAHGKALS
RDSMMDLLMTNVSPGGKYVPRSLLVDLEPGTMDSIRGSHIGALFRPDNFIHGNSGAGNNW
AKGHYTEGAELIEQVMDRVRNESENCDCLQGFQLVHSLGGGTGSGMGTLMINKIREEYPD
RIMTSFSVMPSPKVSDTVVEPYNATLSVHQLLESTDETFCIDNEALYDICFRTLKLTTPT
YGDLNHLVSMTMSGVTTSLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTPRGSQQY
RALTVPELTQQMFDARNMMTACDPRRGRYLTVAAVFRGKMSTKEVDEQMLAVQQKNSNYF
VDWIPHNVKVAVCDIPPRGLKLSSTFIGNNTAIQEIFRRVGDQFALMFRRKAFLHWYTGE
GMDEMEFTEAEGNLNDLVSEYLQYQDATAEFEPEDEYEQEPPVMATATRIPSRMEVTTEM
VTETTRETADEDVP
NT seq
1485 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgaaattgtacatctgcaaattggtcaatgtggcaaccaaatcggctcaaagttc
tgggaagtgatcagcgcagaacatggaatcagcaagacaggcatctatgagggtgacagc
acagtccaattggatagagtcaatgtctactttaatgaagcacatggtaaggcattatca
cgagactccatgatggacttgctaatgacaaatgtgtctccaggaggtaaatatgtgcct
cgttccctgctggttgacctggagcccggcaccatggacagcatcagagggagtcacatc
ggtgctctcttcaggccagacaacttcattcatggcaattcaggtgccggcaataactgg
gcaaagggccactacactgagggggcggagctgatagagcaggtcatggaccgggtgagg
aacgagagcgagaactgcgactgcctacagggcttccagctggttcactccctcggtggc
ggcacgggttccggcatggggaccctgatgatcaacaagatccgagaggagtatcccgac
cggatcatgacaagcttcagtgtcatgccctcaccaaaggtctctgatactgtggtggag
ccctacaatgccaccttgtcggtccaccagctcctggagagcacggacgagaccttctgc
atcgacaacgaggcgctctatgacatctgctttcgcacgctcaaactcaccactcccacg
tatggagacctcaaccacttggtgtccatgaccatgagtggggtcaccacctccctgaga
ttccccggtcagctcaatgccgatctgaggaagctggcggtcaacatggtgcctttcccc
cgtctccacttcttcatgcccggtttcgccccactgacgccacgcggcagtcagcagtac
cgcgccctcaccgtacccgagctcacccagcagatgttcgacgcccgtaacatgatgacg
gcctgcgaccccagacggggacgctacctcacggtcgccgccgtcttccgcggcaagatg
tctaccaaggaagtggatgaacaaatgctggccgtccagcagaagaacagcaactacttt
gtggactggatcccacacaacgtcaaggtcgccgtgtgcgacatcccgccccgaggcctc
aaactatcttccacgtttattggcaacaacacggccattcaggaaatattccgccgagtg
ggcgatcagttcgccttgatgttcaggcgcaaagcctttctccactggtacaccggcgag
ggcatggacgagatggagttcacagaggctgagggcaacctcaacgacctggtttcagag
tacctgcagtaccaagacgccacggccgagttcgaaccggaggacgaatacgagcaagag
ccgcccgtcatggctacagccacgaggattccgtctcggatggaagttacgacggaaatg
gtgacagaaacgacgagggaaactgcggatgaggacgtaccatga
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