Syngnathus scovelli (Gulf pipefish): 125977512
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Entry
125977512 CDS
T08785
Name
(RefSeq) phospholipid-transporting ATPase ABCA1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv02010
ABC transporters
sscv04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
125977512
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
125977512
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
sscv02000
]
125977512
Transporters [BR:
sscv02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
125977512
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_15
AAA_23
MukB
Motif
Other DBs
NCBI-GeneID:
125977512
NCBI-ProteinID:
XP_049590024
LinkDB
All DBs
Position
1:complement(25508421..25567345)
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AA seq
2208 aa
AA seq
DB search
MGLLTQFALLLWKNFTLRKRQKVRLVVEILWPLFLFFILVWVRFTNEPTHKGQCHYPNKP
MPSAGLIPWIQGLACNMDNPCLSHPTPGEAPGQVNNFENSLISRGLIELQSLLLNKSILG
NAQRLADDVTRLAAVMSPADAENGQPVQLTTILRDNETFSAFLTENLSLPLPVVESFMAA
NISVNLILIPVPGHLGNFLCDGKDLDQYIQFQSPLDKEAFRNASCSLDPQQLSDSQRVLL
QNLDFSKVLAQLPSVLDLDAVDVTTLLTRTTANALPIFQEVSRLQNSVSLAGSLNFQGDM
IGSVNMLLCGKQLDSNSSNVTLGSPSLRRALSKQSISSQRNTSSSFCQTLVDTLEGTPSL
RYIWSSFKFFFRGKILFTPDSPATRLIVKEANSTFNALAMLKEMADAWDELGPRVWDFFQ
NSQQVNVIRTLLANPVFAAALDQRLNGSGWTAALLANFLYNGPPADRPDGAPPHDWRDLY
NTTTEILQFLSKVLGCLDLNKFEATSNEDQLVGKALELLMTDDYWAGVVFVNLPPNASRV
PPHIRYTIRMDIEEVERTNKKKERSWSPGARDNSFNDLRYIRGGFAYVQDMIEHGIARTQ
TSGSQPLGVFAQQMPYPCYVDDTFIQAIGGILPMFLVLAFMYTTCMIIKSLVLEKELRLK
EVLRAVGVRDSALWLTRFAENVLLLAVPCALLSVMVKYGKVLQYSDPSLIFVFLLVFCLT
TVTQCFFISVFFSKANLAAACGGLIYFVLYLPHILCYAWRDVLGFGPKVAASLLSCVAFG
FGCESFSKYEEQGVGIQWSNMGRSPEEGERYTFAVSIGMMLFDAALYWTLTWYIESVFPG
QYGIPRPWYFPFTASYWCGSPSAPDLQKDATSSLHNEYLEKSDPSLKVGVSVRNLVKIYK
TGNKLAVDGLSVDFYENHITSFLGHNGAGKTTTMSILTGLFPPTSGTAVINGSDICTDID
GARRHLGMCPQHNVLFDELTVEEHIYFYGRLKGLSRAEVDAEMEQMIRDVGLPHKRRDLA
KNLSGGMQRKLSVAIAFVGGSKVVILDEPTAGVDPYARRGIWELLLKYKQGRTIILSTHH
MDEADILGDRIAIIANGRMRCCGSSLFLKKRFGTGYYLTLVKEQERPSGRSSAHDHTTMD
SRNYEGVHPTDLTTLGQLVHRHVPRALFLERIGYEITYVLPYDGAHDGTFARLFRELDLA
MADLGLTSYGISDTTLEEIFLKVAEDTGVDAEDISTTKRNSISAATVHPEKEKEASGDME
MFASQVEVLQRDTDVGGRGSTVIVGWQLIRRQFLALFIKRFHHARRSRKGLIAQVVLPAV
FVCLALIVSLIVPPFAEYPSLELQPWMYGLPQTTFFSNDAPGNPEVSEVVETLVNNPGFG
TRCMDGDPIPGLPCDSRLSDWLTPSVDQSVTDVFLEGNWSMSNPSPSCQCSTPQRQMMLP
ECPPAAGGLPPPQRIQNTTDTLLDLTGRNMTDFLVKTFERSGKTRYGGISVGVVKSQVRL
NDAGIKATFQNLRDIFNYSHANVTDKLLDTAETLLKRLETKHYLKVWFYNQAWHSLVSFL
NVANNAILRAGLPPGADARRYGISASSHPLNLTKEQLSFVALASSSTDVVLSICVIFAMS
FIPASFVLFLIQERVSKSKHLQFVSGVNPTVYWLSNFAWDACNYAVPCVIVIIIFLCFQQ
EAYVSAANLPALILLLLFYGWSITPMMYPASFVFSVPSTAYVVLTCVNLFIGINGSVATF
MMELFDDSNITVINDIVKQVLLIFPHFCLGRGLIDMAKNQAMANLFSNFGENRFKEPLSW
EMVGKYLCAMSIQGAVMFAITLLIQYKFFCKPRFISAKSLSTEEEDVDVTRERERVHAGK
AQNDLLRLYDLTKVYPGKRIPAVDRLCVGVPTAECFGLLGINGAGKTTTFKMLTGDIPVS
SGEAFLNGFSIRTEMRAVHQNMGYCPQFDAINDLLTGREHLEFYARLRGVPEKEVAMVAE
WGIQKLGLIKYATKPAGTYSGGNKRKLSTAIALIGCPPLIFLDEPTTGMDPKARRFLWDC
IMSVVKEGRSVILTSHSMEECEALCTRMAIMVNGHFKCLGSIQHLKSRFGDGYTVTVRVG
GHPPHLKPVEDFIERTFAGSVLKEKHHNTLQYQLPAGQGVLAHIFRHFTDQRHTLCVDDY
SVSQTTLDQVFVNFASRQLGEDDSPSYDNQVDTSDELPIKSIKTSYKV
NT seq
6627 nt
NT seq
+upstream
nt +downstream
nt
atgggtctcctgacgcagtttgctctgctcctgtggaagaacttcactctccggaagaga
caaaaggtccgcttggttgtggaaattctttggcctctgttcctcttcttcattctggtg
tgggtacgcttcaccaacgagccgacccacaaaggccaatgccactatccgaataaaccc
atgccgtcggccgggctgattccttggattcaaggtctggcgtgcaacatggacaatccc
tgcctgagtcatccgacgccaggggaggcgccgggacaggtcaacaactttgagaactca
ctaatttcaagggggctgattgagctgcaaagcctcctgcttaacaaatccatcctcggc
aacgcccaacgactggctgacgacgtcacccgattggccgcggtcatgtcgccggctgac
gctgagaacggacaaccagttcaactgacgactattctgagagacaacgaaacgttctcg
gctttcttgactgagaatttgtccttgccgcttccggtggtcgaaagtttcatggcagcc
aatatttctgtcaacttgatcttgatccctgtgcctggtcaccttggtaactttctgtgt
gacggaaaagatctggaccagtatatccagtttcaaagtccgttggacaaggaggccttc
cggaatgccagctgctccctggaccctcagcagctcagcgacagccagcgagtgctcctg
cagaatctggacttcagcaaagtcttggctcagctgccgtcagttttggatttggacgcc
gtcgacgtaacgacactactcacgagaaccacggcaaatgccctcccaatttttcaagag
gtgagccgtttgcagaactccgtgagcctcgcagggtcgctgaatttccagggggacatg
attggcagcgtcaatatgcttctgtgcggaaagcagcttgactccaattccagcaacgtg
accctgggctccccgtcgctcagacgagcgcttagcaagcagtcaatctccagtcagcgc
aacacgtccagttctttttgtcaaaccctcgttgacacgcttgagggaaccccgagtctc
cgttacatctggagctccttcaagttctttttccgaggaaaaatcctttttacacccgat
agcccggcgacacgactcatcgtgaaagaggctaacagcaccttcaacgccttggcgatg
ctaaaagaaatggccgacgcttgggatgaactgggtccacgtgtttgggacttctttcaa
aacagccagcaagtcaacgtaatacggactttgctggccaatccggtctttgccgccgcc
ctggaccagcgtcttaacggcagcggttggaccgccgctctgctcgccaatttcctctac
aacggacccccggcggatcgacccgatggggcgccgccccacgactggcgggatctttac
aacaccaccacggagattctccagtttctatccaaggtccttggttgtttggatttgaac
aagtttgaagccacttccaatgaagaccagctggtgggtaaagcattggagctcctcatg
acggacgattactgggccggcgtcgtttttgtcaacctgccacccaacgccagccgagtc
cctcctcacatccgttatacgatccgcatggacatcgaggaagtggagcgcaccaacaaa
aaaaaagaacggtcatggtctccgggggctcgagacaactcttttaacgacctgcgctat
atacggggaggattcgcctacgtgcaggacatgatcgagcacggcatcgcgcgaacgcaa
acgtccggcagtcaacccctcggtgttttcgctcagcaaatgccctacccttgctatgtg
gatgacaccttcatccaagctattggcgggatcctcccgatgttcctggtgttggctttt
atgtacaccacgtgcatgatcatcaaaagtctggttctggagaaagagcttcggctcaag
gaggttctgcgagcggtgggcgttcgcgacagcgcactttggctgacgaggttcgccgag
aacgtgcttctgctcgccgttccgtgcgccctacttagtgtcatggtcaagtatggcaaa
gtgttgcagtacagcgaccccagcctcatctttgtcttcctgttggtgttctgcctgacc
accgtcacccagtgcttcttcatcagcgtcttcttctccaaggccaacttggcggcagcc
tgcggcggcctcatctactttgtcctctacctacctcacattctttgctacgcctggagg
gatgtcctaggtttcggacccaaggttgcggcgagtttattgtcctgcgtggcattcggt
tttggctgcgagagcttctccaaatatgaggagcaaggcgtcggtatccagtggtccaac
atgggccggagtcccgaggagggcgagcgctacacttttgccgtgtccatcggcatgatg
ttatttgacgccgccctctactggacgctcacttggtacatcgaaagtgtcttcccaggc
cagtacggaatccccaggccttggtacttcccgttcacagcttcttactggtgtggcagc
ccctctgcacctgatttgcaaaaggacgccaccagctccttgcacaacgaatatctggag
aaatcggaccccagtctaaaagtcggcgtgtcggtacgcaacctggtcaaaatctacaaa
acaggaaataagctggctgtggacgggctgagcgtcgacttctacgaaaatcacattacc
tccttcctgggccacaacggagccgggaaaaccaccaccatgtcaattctgacgggcctg
ttcccgcccacgtcaggcacggcagtcatcaacggctccgatatttgcaccgacatcgat
ggcgcccgccggcacttgggcatgtgcccccagcataacgtcctctttgacgagctgacg
gtagaggagcacatctacttctacggccgtttgaagggactgagtcgcgccgaggtggac
gccgagatggagcagatgatccgggatgtcggtctgccgcacaagagacgagacctggcc
aagaacctgtcaggcggcatgcagaggaagctgtcggtggccatcgcgtttgtcggagga
tcaaaagttgtcatcttagacgagcccacagcaggggtcgacccctacgcccgcaggggg
atctgggagctgctcctcaagtacaaacaaggccgcaccatcatcctgtccacgcaccac
atggacgaggcggacatcttgggcgaccgcatcgccatcatcgccaatggcaggatgcga
tgctgcgggtcgtccctgttcctgaagaaacgcttcggcacgggctactacctcacgctg
gtcaaggagcaggaacgtccttcagggagaagcagcgcccacgaccacaccaccatggat
agccgaaactacgaaggagtccatcctaccgatttgacaacgctgggtcaactggtgcat
cgccacgtcccgcgggcgctcttcttggagcgcatcggctatgaaatcacctacgtcctg
ccctacgacggcgcccacgatggaacgtttgcccgtcttttccgtgagctggacctggcc
atggccgacctgggtttgaccagctacggcatatctgacaccactctggaagagattttt
ttaaaagtcgctgaagacacaggagtggatgcagaagacatttcaacaacaaagaggaac
agcatctcggccgccaccgtccatcccgaaaaggaaaaggaggcgagcggtgacatggaa
atgtttgccagtcaagtggaagttttacagagggacaccgatgtcggcggtaggggctcg
acggtcatcgtcggatggcagctgatcaggaggcagttcctggctctcttcatcaagcgc
ttccaccatgccaggaggagccgcaagggactcattgcccaggtggtgctgcctgccgtt
tttgtgtgcctcgccctgatcgtctcactcatcgttccgccattcgccgaatatcccagt
ctggaactgcaaccctggatgtacggcttgcctcagaccaccttcttcagtaacgatgca
ccaggaaatcctgaggtgtccgaagtggtagaaaccctggtgaacaatcccggcttcgga
acacgttgcatggacggcgacccaatcccggggttaccttgtgactcccgcctctccgat
tggctcacgccatctgtggaccagtcggtgaccgacgtctttctagagggcaactggagc
atgtccaacccctccccttcttgccagtgtagcactcctcaacgccaaatgatgctgccc
gaatgtccgcccgccgcaggggggctcccgcctccgcagaggatacagaacacaaccgac
acgctcctggatttaacgggacggaatatgactgacttcctggtcaagacttttgagcgg
tccggcaaaaccaggtatggtgggatctcggttggtgttgtcaagtcccaagtccgcctg
aacgatgcaggtatcaaagccacgttccagaacctgagagatatcttcaattactcccat
gccaacgtgacggacaagctcctcgacacagccgagacgctgctcaagaggctggaaacc
aaacactatctgaaggtgtggttctacaaccaggcgtggcacagcttggtgtccttcctc
aacgtggctaacaacgccatcttgagagcgggtctgccgccgggagcggacgcccggcgt
tacggaatctcggcgtccagtcaccctcttaaccttaccaaggagcaactctcctttgtg
gccttggcctcgagttccaccgacgtcgtgttgtccatctgcgtcatcttcgccatgtcc
ttcatccccgcaagctttgtccttttcctcatccaggagcgagtgagcaaaagcaagcac
ctgcagttcgtcagcggcgtgaacccgaccgtctactggttgtccaatttcgcctgggac
gcctgcaactacgccgtcccttgtgtcatcgtgatcattatcttcctgtgctttcaacaa
gaagcatacgtctcggcggccaacctgcccgctttgattctgctgctgcttttctacggg
tggtcgatcacacccatgatgtacccggcgtcgttcgtgttcagcgtgcccagcaccgcc
tacgtggtgctcacctgcgtcaacctcttcatcggcatcaacggcagcgtggccaccttc
atgatggagctttttgatgatagcaacataacggtcattaacgacatcgtgaaacaagtg
ctcctcatcttccctcacttctgtctgggccgaggacttattgacatggcgaagaaccag
gctatggccaacctcttcagcaactttggcgagaatcgcttcaaggagccgctaagctgg
gagatggtgggaaagtacctgtgcgccatgtccatccaaggagctgtcatgtttgccatc
acccttctcattcagtacaagttcttctgtaaacccaggtttatttcagcaaagtcgtta
tccacggaggaagaagatgtggatgtaactcgcgaacgggagcgggtgcacgctgggaag
gcccagaacgaccttttgaggctctacgatctgactaaggtgtatccggggaagcgcatc
cccgccgtggaccggctatgcgtgggcgttcctacggcagagtgctttggcttgctggga
atcaacggggccggaaagacgaccacctttaagatgctgactggtgacatcccggtttcc
agtggcgaggccttcctcaacgggttcagcataagaaccgaaatgagggccgtgcaccag
aacatgggctactgcccccagttcgatgccatcaatgacctgctgaccggccgagagcat
ctggagttctacgccaggcttcgaggggttccggaaaaggaggtcgccatggtggctgag
tggggcattcagaaactaggcctgattaagtatgccaccaagccggcgggcacctacagt
ggaggcaacaagcgtaaactttccaccgccatcgctttgataggctgtcctccgctcatc
ttcttggatgagcccaccaccgggatggatcccaaagctcggcgcttcctgtgggactgc
atcatgagcgtggtcaaggagggacgctctgtcattctcacctcacacagtatggaggag
tgtgaagcgctgtgcacgcgcatggccatcatggtgaacggacacttcaaatgcctcggt
agcattcagcatctgaagagcaggttcggcgacggctacacggtgacggtacgcgtgggc
ggccatcctccgcacctgaagcccgtggaggactttatcgagcgaacgttcgcgggaagc
gtcctgaaagagaagcatcacaacacgttgcagtaccagctgccggcaggccagggggtg
ctggcgcacatcttccgacacttcaccgaccagcggcacacgctatgcgtggatgactac
tccgtgtctcagaccaccctggaccaggtctttgtgaattttgccagccgccaacttggc
gaggatgactccccgagctacgacaaccaggtggacacctccgacgagctcccgatcaag
tcgatcaagacctcctacaaggtctag
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integrated database retrieval system
