Syngnathus scovelli (Gulf pipefish): 125977514
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Entry
125977514 CDS
T08785
Symbol
chd5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sscv03036
]
125977514 (chd5)
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
125977514 (chd5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
PHD-1st_NSD
ResIII
HDA2-3
PHDvar_NSD
HTH_Hrp3
DEAD
PHD_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
125977514
NCBI-ProteinID:
XP_049590023
LinkDB
All DBs
Position
11:2548301..2567325
Genome browser
AA seq
1993 aa
AA seq
DB search
MPGSLSNEDEAQDDMDFDDEMPDEEDTRPVLPLASIGSFFSDDDDSLKQQQQKKKKSKKM
KEGKVAKVKKRKKEGGIQVSVDSEQERASEVEEDEPDRPERGSGSDTGMFGLPKKKKKKP
REKKERKPRKKKRDEEDDDEDDDDGSMKEPKSSSQLMHEWGLEDVQYGFTEDDYKTITNY
KAFSQFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGASATAVAAAVAAAVETVT
VAPPTSVGQPGAPLGPIKKAKTKEGKGPGARKRSKSAKDMKKKVKAKKTKSKSGQSGKKK
KTSSSDEDFLDESDFDDISILSASVLCDASGPIAAKKKARRGRKKRKKEDGDGYETDHQD
YCEVCQQGGEIILCDTCPRAYHLVCLEPELEKAPEGKWSCPHCEKEGIQWEAKDEEDEEE
DEAGGEEEDDHMEFCRVCKDGGELLCCDACPSSYHIHCLNPPLPEIPNGEWICPRCLCSP
LKGKVQKIMHWTWGDAPLPAEPPAGPDGHPLVDPLSKPPLKGRPEREFLVKWAGLSYWHC
SWVSELQLELYHTVMYRNYQRKNDMDEPPPYDYGSGEEELNSEKRKSKDPQYAAMEERFY
RYGIKPEWMVIHRILNHSFDKDGDVHYLIKWRDLPYDQCTWEVDDFDVPEYNSHKVSYWD
HREQILGEDQRPAKAMTQREERPKREIPPDAPIIDPTIKFEHQPWYINATGGTLHPYQLE
GLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPFLVSAPLSTIINWER
EFEMWAPDFYVVTYTGDKDSRAIIRENEFTFEDSAVKLGRKAFRMKKDTPIKFHVLLTSY
ELITIDQAILGSITWACLVVDEAHRLKNNQSKFFRILNGYKIYYKLLLTGTPLQNNLEEL
FHLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTEL
IVRVELSPMQKKYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEA
PVLPNGSYDGNQLVKSSGKLTLLQKMLKKLKDEGHRVLIFSQMTKMLDLLEDFLEFEGYK
YERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLASADTVIIYDSDWNPHN
DIQAFSRAHRIGQNRKVMIYRFVTRGSVEERITQVAKRKMMLTHLVVRPGLGSKTGSMSK
QELDDILKFGTEELFKDEMEAARNMGGDNKDGEEGNVIHYDDDAISKLLDRSQDATEDTE
IQNMNEYLSSFKVAQYVVKEEDGEEEVEREIIKQEENVDPDYWEKLLRHHYEQQQEDLAR
NLGKGKRIRKQVNYNDTTQEDQEWQDDVSDNQSEYSVGSEDEDEDFEERPEGGRRHSRRH
LRNDKDKPLPPLLARVGGSIEVLGFNARQRKAFLNAIMRWGMPPQDAFTSHWIVRDLRGK
SEREFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEH
VNGKLSSPDLIPIGMELKKLTESVSSDPNTPLQASPIATQPGTPDLPEKTEGPTEDKDAA
EQDSKKQLEPETCIAPTHAHEEEEEAHRRQEKDSADGDESMATSEEKTGRDDKEDKQADG
PGGRNSPTSETRPTCESRPKDSEKPPERGESKEKESKADEVKSEDTAAAAAADARLNGDK
DTVDEMEDTRKEEKNGFKTKFMFNIADGGFTELHTLWQTEERAALSSGKMPDIWHRRHDY
WLLAGIVTHGYARWQDIQNDPRYAILNEPFKSEMHKGNYLEMKNKFLARRFKLLEQALVI
EEQLRRAAYLNMSQDPGHPAMALNTRFTEVECLAESHQHLSKESLGGNKPANAVLHKVLN
QLEELLSDMKADVTRLPNMLSRIPPVSARLQMSERSILSRLTSRGGEPPPQQTFSQGGFT
CSQLYGGTFGGAFRGPGGQPMVNYSQMPLGPYVSVSNGPPSSHLDKKTFESLRDAATPDL
KSGKASDVICIED
NT seq
5982 nt
NT seq
+upstream
nt +downstream
nt
atgcccgggtcgctgagcaatgaagacgaggcgcaggacgacatggattttgacgacgag
atgccagatgaggaggacacccgcccggtgctgcccctggcctccatcggcagcttcttc
tcggacgacgacgactccctcaagcagcagcagcagaagaagaagaagagcaagaagatg
aaggaggggaaggtggccaaagtcaagaagcggaaaaaggagggaggcatccaggtgagc
gtggatagcgaacaggaacgtgcatctgaagtggaggaagatgagccggaccgtcccgag
cgaggctcagggagcgacaccggcatgttcggtcttcccaagaagaagaagaagaagccc
agggagaagaaagagaggaagcccaggaagaagaagcgagacgaggaggacgacgatgag
gacgatgacgacgggagcatgaaagaacccaaatcgtccagccagttgatgcacgagtgg
ggcctggaggacgtccagtacggcttcaccgaggacgactacaagactatcaccaactac
aaagccttcagccagttcctcagacctctcattgccaagaagaaccccaagatccccatg
tccaagatgatgacggtcctgggagccaagtggcgcgagttcagcgccaacaacccattc
aagggcgcctcggccaccgccgtggctgccgctgtcgccgctgccgtggaaacggtcacc
gtggcgccgcccacctctgttggccagccgggcgctccgcttgggcccatcaaaaaagcc
aaaaccaaagagggaaaagggcccggtgctcgaaagaggagcaaaagtgcaaaagacatg
aagaagaaagtgaaagcaaagaagaccaaatccaagtcgggacaaagcggcaagaagaag
aagacatcctcgagtgacgaagactttctagacgagtcagactttgacgacatcagcatc
ctcagtgcctcggtgctttgtgacgcctcggggcccatcgccgccaagaaaaaggccaga
cgtggacgcaaaaagaggaaaaaggaggacggcgatggctacgagacggaccaccaggac
tactgcgaggtgtgtcagcagggtggcgaaatcatcctgtgcgatacttgtccacgggcg
taccacctggtgtgcctggaaccagagttggagaaggctcccgagggcaaatggagctgt
ccgcactgtgagaaggaaggcatccagtgggaagccaaagatgaagaggacgaggaggaa
gacgaagcaggaggggaggaagaggacgaccacatggagttttgccgagtgtgtaaggac
ggcggggagctgctgtgttgcgacgcctgcccgtcctcctaccacatccactgcctcaac
ccgccgctgcccgagattcccaacggggagtggatttgtccgcgatgcttgtgctcacct
ctgaaaggcaaagtgcaaaaaatcatgcactggacgtggggtgacgcccccctgcccgcc
gagccgccggcaggcccagacggtcacccgctcgtcgaccccctgagcaagcccccgctc
aagggccgccccgagcgggagttcctggtcaagtgggccggactctcctactggcactgc
tcttgggtcagcgagctgcagttggaactgtaccacacggtgatgtaccgcaactaccag
cggaagaacgacatggacgaaccgccgccgtacgattatggctccggcgaggaggaactc
aacagcgaaaagcggaagagcaaagaccctcagtacgccgccatggaggagcgcttctac
cgatatggcatcaagcccgagtggatggtcattcaccgcatcctcaaccacagttttgac
aaagatggcgacgtgcactacttgatcaagtggcgggacctcccttacgaccagtgcacg
tgggaggtggacgactttgacgtgccggaatacaacagccataaagtgtcctactgggac
cacagggagcaaatcctcggcgaggaccagcgccccgccaaagcgatgacgcaaagagag
gagcggcccaagcgggagatccccccagatgctcccatcatcgacccgaccatcaagttc
gagcaccagccgtggtacatcaacgccacaggggggacgctgcacccgtaccagctggag
ggtctcaactggttgcgcttctcctgggcgcagggcaccgacaccatcttggctgatgag
atgggcctgggcaagaccgtgcagaccatcgtatttctctactcgctctacaaagagggt
cactccaagggtcccttcctggtgagcgccccgctgtccactatcatcaactgggagcga
gagtttgagatgtgggcccccgacttctacgtggtcacctacaccggagacaaagatagc
cgcgccatcatccgggagaacgagttcaccttcgaggacagcgccgtcaagttgggacgc
aaagctttccgcatgaagaaagacacgcccatcaagttccacgtgctcctgacgtcctac
gagctgattaccatcgatcaagccatcttgggatccatcacctgggcttgtctggtggtg
gacgaggcccacaggctgaagaacaaccagtccaagtttttccgaatcctcaatggctac
aagatctactataagctgctgctcaccggaactcctctccagaacaacctggaggaactt
ttccacttgctcaacttcctcacgccggagcgcttcaataaccttgagggcttcctggag
gagtttgctgacatctccaaggaagaccagatcaagaagctccacgacctgctgggccca
cacatgctccggaggctcaaggcggacgtctttaagaacatgccggccaagacggagctg
atcgtgcgagtggagctcagccccatgcagaagaaatactataagttcatcttgacgcgg
aactttgaggctctcaactccaaaggtggaggcaaccaagtctccctgctcaacatcatg
atggacctgaagaagtgctgcaaccacccctacctgttccccgtggccgctgtggaggct
cccgttttgcctaacggctcgtacgacggcaaccagctggtcaagtcgtcgggaaagctg
acgctgctgcagaaaatgctaaagaagctcaaggatgaaggccacagagttctcattttc
tcccagatgaccaagatgttggatctgctggaggactttctggagtttgaaggttataaa
tacgagcgcatcgacggcggcatcaccggaggcctgcggcaggaggccatcgaccgcttc
aatgcgccgggcgctcagcagttctgcttcctgctctcaacccgagccggaggtctagga
atcaatctggccagcgcggacaccgtcatcatctatgactcagactggaaccctcacaat
gacatccaagctttcagcagagcgcaccgcatcggccagaacaggaaggtgatgatctac
cgattcgtgacgaggggctcggtggaggagaggatcactcaggtggccaagaggaagatg
atgctgacccacctggtggtgcggcccggtctgggctccaagacgggctccatgtccaag
caggagctggacgacatcctcaagtttggcacggaggagctctttaaggacgagatggag
gcggctcgcaacatgggcggcgacaacaaagacggcgaggagggcaacgtgatccactac
gatgacgacgccatttccaagctactggaccgcagccaggacgccacggaagacacggag
atccagaacatgaacgagtacctcagctccttcaaggtggcccaatacgtggtcaaagag
gaggacggggaggaggaggtggagcgcgagattatcaagcaggaagagaacgtggacccg
gattattgggagaagctcctgcgccaccactacgagcaacagcaggaagatctggcccgc
aacctgggcaagggcaaacgcatccgcaaacaagtcaactacaacgacaccacccaggag
gaccaagagtggcaggatgatgtttcagacaaccagtcggagtactcggtggggtccgag
gacgaggacgaagacttcgaggagaggccggaaggtgggcgccgacactctcgccgccat
ctgaggaatgacaaagacaagcccttgccccccctgctggcccgagttggcggcagcatc
gaggttctgggcttcaacgcccggcagaggaaagccttcctgaacgccatcatgcgctgg
ggcatgcccccgcaggacgccttcacttcccactggattgtgcgagacctgagaggcaaa
agcgagcgcgagttcagggcctacgtgtctctgttcatgcgacacctgtgcgagcctggc
gccgacggagccgagacgttcgctgacggcgtcccgcgtgagggcctgtcacgacagcac
gtgctcaccagaattggggtcatgtcgctggtcaggaaaaaggtacaagagtttgagcac
gtcaacggaaagttgagctcgccggacctgatcccgatcggcatggagctgaagaaactg
accgagagtgtttcgtcagaccccaacaccccgctgcaggccagcccgatcgccacgcag
cccggcacccctgacctgccagaaaagaccgagggtcccactgaggacaaggacgcagct
gagcaagacagcaagaaacagttggagccagaaacttgcatagcgccgacacatgcgcac
gaagaggaggaggaagcgcaccgacgccaggagaaggactcggcggacggcgacgagagc
atggcgacctctgaggagaaaacgggacgagatgacaaggaggacaaacaggcggatggg
ccgggcggtcggaactcacctacgagtgagactcggcctacatgtgagagtcgtcccaaa
gactcagaaaagcctcctgagagaggagaaagcaaggagaaggagagcaaagcagatgag
gtgaaaagcgaggacactgccgccgcagcagctgcagatgctcgcctaaacggtgacaaa
gacacagtggatgaaatggaggacaccaggaaggaggagaagaacggattcaagaccaag
ttcatgttcaatatcgccgatggaggcttcacagagttgcacacgctgtggcagacggaa
gagcgagcggcgctgtcgtccggcaagatgcccgacatctggcaccgtcgccacgactac
tggctgctggcgggcatcgtcacgcacggttacgctcgctggcaggatatccagaacgac
ccacgctacgccatcctcaatgagcccttcaagagcgagatgcacaagggcaactacctg
gagatgaagaacaagttcctggcccgccgattcaagttgctggagcaggcgctggtgatc
gaggagcagctccggcgtgccgcctacctcaacatgagccaagaccccgggcatcccgcc
atggctctcaacacgcgcttcaccgaggtggagtgtctggccgagtcccaccagcacctg
tccaaagagtccctgggtggcaacaagcccgccaacgccgtgctgcacaaagtgctgaac
cagctggaggagctgctaagtgacatgaaggccgatgtgacgcggctgccaaacatgttg
tcccgcatcccgcccgtgtcggctcgactgcagatgtctgagcgcagcatcctgagccgc
ctcaccagccggggcggcgagcccccgccgcagcagactttcagccagggaggcttcaca
tgctcccagttgtacggaggcacattcgggggtgcattcaggggacccggagggcagccc
atggtcaattacagtcagatgcctctggggccatacgtcagtgtgtccaacggtcctccc
agcagccacctggacaagaagaccttcgagtccctgcgagacgcggccacacccgacctg
aagtccggcaaagccagcgacgtcatctgcattgaggactga
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integrated database retrieval system
