Syngnathus scovelli (Gulf pipefish): 125977562
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Entry
125977562 CDS
T08785
Symbol
rbl1
Name
(RefSeq) retinoblastoma-like protein 1 isoform X1
KO
K04681
retinoblastoma-like protein 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04110
Cell cycle
sscv04218
Cellular senescence
sscv04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
125977562 (rbl1)
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
125977562 (rbl1)
04218 Cellular senescence
125977562 (rbl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125977562 (rbl1)
Transcription factors [BR:
sscv03000
]
Eukaryotic type
Other transcription factors
Pocket domain Rb
125977562 (rbl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RB_A
RB_B
DUF3452
TFIIB
Rb_C
Motif
Other DBs
NCBI-GeneID:
125977562
NCBI-ProteinID:
XP_049590199
LinkDB
All DBs
Position
11:complement(12579622..12611195)
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AA seq
1068 aa
AA seq
DB search
MRGDESSDSESGRMEESVARRSLETLCQELNMDERTATEAMDNFTTIWNTYTLEGEVVHW
LACSLYAACRKGSTPTVGKGLMEGNCVSLTRILRTAKLSLIEFFSKMRKWSDMSNLCENF
RVRMERLERNFEVSTVIFRKFQPIFAAMFRSPHGSEAPPPLPRQPRGRKHRRLPCHSADV
FKFCWTLFVYTKGNFHMIGDDLVNSYHLLLCCLDLVFGNALMCANRKELINPAFIGTSGD
EVQACADEASPCVLERLCELHDGLVVEAKGIKQHYFRPYMHKLFCKQILKGNENLLTELL
DPHNFIDNNKALNRQYEEYVLTVGDFDERIFLDADADEEIGTPRKSFQPPAAAGTSMGHA
TAAQTQLQHHMEKTASLAPSTPLTGRAYLKEKDVPVTPVSSATQSVSRLQSMVAGLRGAP
SEQLLRIFKSCSRDPTESIVNRVKALGHTFKKEYTDDADHSSGSHIGTDGYHTVFKHAWT
TYFAESRLKLAEILFYKVLENVLVQETKRLQGKDMSALLEQDIFHCSLLACCLEVVLFCY
SSQRTFPWILDVFKLAPFYFFKVIEVFIRSEEGLSRDMVKHLNLIEEQVLESRAWTADSA
LWNALSAAGNKVPSVEEVNFPSSLDSRSSASTGSAQSHLPLVALSPIVHPRIQEVRSGVG
SMRKEVPPSPLSVHDRYSSPAAGSAKRRLFGDDPPASVTASGPVASPTKRLTLSSAGTLK
IGPQAGQTAVLSIPLQGGASEHTITLIPVQPCDPTAGGPTQFLWTASPGRPLPPPVAEAQ
PACGRPQRTGSLALFFRKVYHLASVRLRDLCARLDISCELRAKIWTAFEHALLHAAELMR
DRHLDQMLLCSVYIIAEISKEEHTFQDIIKCYRSQPQASSHVYRSVLLHRTPSHRVAPSD
ENMEVDPASEADSAEKTQAGKQERGNLIQFYNDVYVLKMKSFAMRYAAHDNRMPVSPFPS
VRCHPPSPRRVSQRHCVYVSPHKASRGGLAPNSFTFRINSSPSKDLSDINRMLRQGCNGR
KRALGMESEMMMSVCDSPSKRACSESSTSGPDILLKRLQDVVSERQSH
NT seq
3207 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggcgacgagtcgtccgattcggagtcgggccgaatggaggagagcgtcgcgcgg
aggagtttggaaacgctgtgtcaggagctcaacatggacgagcgcacggccaccgaagcc
atggataacttcacgactatctggaacacatacacgctggagggtgaggtagtgcactgg
ctggcctgctcgctgtatgctgcttgcaggaaaggaagcacacccacggtgggcaaaggc
ctgatggagggaaactgtgtgtcgctcaccaggatactgcgcactgccaaactcagcctg
atcgagttcttctccaagatgcgcaagtggtccgacatgtccaacctgtgcgagaacttc
cgtgtgcggatggagcgcctggagcgcaactttgaggtttccactgtcatcttccgcaag
ttccagcccatctttgccgccatgtttcgcagcccgcatggctccgaggcgccacctcct
ctcccgcgccagccccgcggccggaagcatcgccggttgccctgtcactctgccgacgtc
ttcaagttctgctggacactctttgtctacaccaaaggtaactttcacatgatcggagat
gacctggtgaactcgtaccacctgctgctgtgctgtcttgacctggtctttggaaacgcg
ctgatgtgcgccaacaggaaggaactcatcaaccccgccttcatcggcacatcgggggac
gaagtccaggcgtgcgccgacgaggcgtctccatgcgtgttggagagattgtgcgaactt
cacgatggccttgtggtggaagccaaaggcatcaagcaacactacttcaggccttacatg
cacaagctcttctgcaaacagatcctgaagggcaacgagaatcttctgaccgaactattg
gatccccacaactttattgacaacaacaaagcgctcaaccgccagtatgaggagtacgtc
ttgacagtgggagactttgacgagcgcatcttcctggacgccgacgccgatgaggaaatt
ggaacgcccagaaaaagtttccagccgccagctgccgcgggcacaagcatgggacatgcc
accgccgctcagacgcagctgcagcatcacatggagaagacggcctctctggcgccttct
acgcctctgacgggtcgcgcctacctaaaggagaaggatgtgccggtgacgcccgtgtcg
tcggccacgcagagcgtcagtcgtcttcagagcatggtggccgggcttaggggggcgccc
agcgagcagctgctgcgcatcttcaagtcgtgctccagagaccccacggagtccattgtg
aaccgggtgaaggcgttgggacacaccttcaaaaaagagtacacagacgacgcagatcac
tcttcagggtcgcacatcggtactgacggataccacacagttttcaagcacgcctggact
acgtactttgctgagagtcgcctgaagctagccgagattctcttctacaaagttctggag
aacgtcttggtgcaggagaccaagaggctgcaaggaaaagacatgagtgctctactggag
caggacatcttccactgctctcttctggcctgttgcctggaggtggttttgttctgctac
agctcccaacggactttcccgtggatcctcgacgtcttcaagctggccccattctacttc
ttcaaggtgatcgaggtgttcatccgctccgaggaaggcctgtcccgagacatggtcaag
catctgaacctgatcgaggagcaggtgctggagagtcgggcgtggacagcagactccgcc
ctgtggaacgccttgagcgccgccggcaataaagtgccctccgtcgaggaggttaatttc
ccgtccagtctggactctcgcagttctgcttccaccggcagcgcccagtcccacctgcca
ctggtggcgctgtcgcccatcgtacatcctcgcatccaagaggtccgatctggagtgggc
agcatgcgcaaagaagttccaccgtcgccactgtcggtgcacgaccgctacagctctccg
gccgccggcagcgctaagcgtcgtctgttcggcgacgacccgccggcctccgtgacggcg
agcggccctgttgcgtctcccaccaaacgcctgacactcagctcagccggcaccctaaag
atcggcccccaggcgggccagacggccgtgctcagcataccgctgcaaggaggcgccagc
gagcacaccatcacgctgatccccgtccagccgtgcgacccgacggccggcggccccact
caattcttgtggacagcctcgcccggccgcccccttccgcctcccgttgcggaggctcag
ccggcgtgcggccggccgcagcgcaccggatccctggcgcttttcttccgcaaggtgtat
cacctggctagcgtgcggcttcgcgatctatgcgcccgactggacatttcgtgcgagctg
cgcgctaagatctggacagcctttgaacacgctctgcttcacgccgccgaactcatgagg
gaccgacacctggaccagatgttgctctgcagcgtctacattattgccgaaatttctaag
gaggagcacaccttccaggacatcataaagtgttaccgcagccaaccgcaggccagcagc
cacgtgtaccgcagcgtccttcttcatcgcactcccagccaccgggtggcgccgtctgat
gagaacatggaggttgaccctgcatcggaagcagattctgccgagaagacgcaagcgggc
aagcaggaacgcggcaacttgatccagttttacaacgacgtctacgtgctcaagatgaaa
agttttgctatgagatacgctgcgcatgacaacagaatgcccgtgtcaccgttcccatca
gtgcgttgccacccgccatctcctcgtcgagtgtctcaacgtcattgtgtttacgtgtcg
cctcacaaagcgtcgaggggaggcctggcgccaaactctttcactttccgcatcaacagc
agcccctccaaggatctgtccgacatcaaccgtatgctgcggcaaggttgcaacggccgc
aagagagcccttggcatggagagtgagatgatgatgtcagtgtgcgactcccccagcaag
cgggcgtgttctgagagcagcaccagtggccccgacattttgctaaagaggttacaggat
gtcgtgtcagagaggcagagccactga
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