Syngnathus scovelli (Gulf pipefish): 125977593
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Entry
125977593 CDS
T08785
Name
(RefSeq) RNA-binding protein 39 isoform X1
KO
K13091
RNA-binding protein 23/39
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sscv03041
]
125977593
Spliceosome [BR:
sscv03041
]
Common components
Common spliceosomal components
General mRNP proteins
125977593
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RBM39linker
RRM_occluded
RBD_DEAH11
RRM_7
Motif
Other DBs
NCBI-GeneID:
125977593
NCBI-ProteinID:
XP_049590297
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Position
11:13861164..13872398
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AA seq
616 aa
AA seq
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MNLWTYGKSSCQSKRLRDLASIISSRESISRHFKRKNLTSRQRRKSGQSQPWRRLTLIVA
IAADQGLRSEQDGRRPGHRGDAGGSLQEGPLRGVPAQHPQRKKSPCRPSRPPASALTPSP
SAQKDDKTASPNGGDEQAKRKKRSRSRDRKRSKSRERKRSRERKRSREKRRSRSRERRRS
RERGGRYRDYHKARKRSRSRSPIRREKSPIRRDKSPIRREKSPNKPLVDNLTPEERDART
VFCMQLAARIRPRDLEDFFSAVGKVRDVRMISDRNSRRSKGIAYIEFVEASSVPLAIGLT
GQRLLGVPIIVQASQAEKNRAAAAAAAANNLQKGSSGPMRLYIGSLHFNITEEMLRGIFE
PFGRIEGIQLMMDSETGRSKGYGFITFSDAECAKKALEQLNGFELAGRPMKVGHVTERSD
GSAAASLLDSDELERTGIDLGTTGRLQLMARLAEGTGLQIPPAAQQALQMSGAIAIGAMA
AVSAAMNPSMNLNMNPPALNLPSQPLATHCFQLSNMFNPSSEDHPGWEVDIQHDVIEECN
KHGGVVHIYVDKNSTEGNVYVKCPSIPAAMAAVGALHGRYFAGKMIKAAYVPLPAYHNLF
PDAATATQLLVPPPRR
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgaacttatggacttatggaaaatcaagctgtcaatcaaaacgtctccgtgatctcgcg
tccataatctcctctcgcgagagcatctcgcgccatttcaagcgcaagaacttaacgtcg
cgccaacgacggaagagcggtcaaagtcaaccttggcgacgtttgacacttattgttgct
atagcagcagaccaggggctgaggagtgagcaagatggcagacgacctggacatcgaggc
gatgctggaggctccctacaggaagggcccttgagaggcgtcccagcgcagcacccacag
aggaagaagagtccctgccgcccgagtcggccgcccgcctcagctctgaccccctccccc
agcgcgcaaaaagacgacaagacggccagccccaatggcggggatgaacaggccaagagg
aagaagcgcagccgcagtcgcgacaggaagcgcagtaaaagtcgagagaggaagaggagc
cgcgagcgcaagcgcagccgggagaagcggcgcagtcgcagccgagagcgccggcgcagc
cgcgagaggggtggccgctacagagactatcacaaggcacggaagcggtcaaggagcagg
agtcccattaggagggagaaaagtccaatcagaagagacaagagtcccatccggagggag
aagagtcccaacaaacctctggtggacaacttgactccagaggagcgagatgccaggacc
gtattctgcatgcaattggctgcccgcattcgccctcgagacctcgaggacttcttctct
gctgtggggaaggttcgagacgtgaggatgatctcggacaggaactcgcgtcgctctaag
ggcatcgcttacatcgagtttgtggaggccagctctgttcctctcgccatcgggctgacg
ggacaaaggctactgggagttcccataattgtgcaggcttcgcaggccgagaagaaccgg
gcagccgccgccgccgctgctgccaacaaccttcagaaaggttcgtcggggcccatgagg
ctctacattggctcgctgcactttaacattacagaggagatgctgagaggaatctttgag
ccctttggaaggatcgaaggcatccagctgatgatggacagcgagacgggccgttccaaa
ggctacggcttcatcacattttcagacgcagagtgcgccaagaaagctctggagcagctc
aacggctttgagctggcgggtcggcccatgaaggtgggtcacgtgactgagcggagcgac
ggctcggccgctgcctccctgctggacagcgacgagctggagcgcaccggtatcgacttg
ggtaccaccgggcggctgcaacttatggcccgcctcgccgaaggtacgggcctgcagatc
cctcccgctgcccagcaagcgctgcagatgagcggtgccatcgccatcggcgccatggcc
gccgtctcagcggccatgaatccgtccatgaacctcaacatgaaccccccggcgctcaac
cttccctctcagcctttggccacgcactgcttccagctctccaacatgttcaaccccagc
agtgaggatcatcccggctgggaggtagacatccagcacgatgtcattgaagagtgcaac
aaacacggcggtgtcgttcacatctacgtggacaagaactcaacagagggcaacgtgtac
gtcaagtgtccgtccatccccgctgccatggcggccgtcggcgcgcttcacggacgatac
tttgcaggcaagatgatcaaggcggcatacgtgccgcttcccgcctaccacaacctgttc
ccggacgccgccaccgccacgcagctgctggtgccgcccccgcgccgatga
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