Syngnathus scovelli (Gulf pipefish): 125977711
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Entry
125977711 CDS
T08785
Symbol
prdm2b
Name
(RefSeq) PR domain zinc finger protein 2 isoform X1
KO
K11432
[histone H3]-lysine9 N-trimethyltransferase PRDM2 [EC:
2.1.1.355
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv00310
Lysine degradation
sscv01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
125977711 (prdm2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125977711 (prdm2b)
03036 Chromosome and associated proteins [BR:
sscv03036
]
125977711 (prdm2b)
Enzymes [BR:
sscv01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.355 [histone H3]-lysine9 N-trimethyltransferase
125977711 (prdm2b)
Transcription factors [BR:
sscv03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
125977711 (prdm2b)
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
125977711 (prdm2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2_4
zf-C2H2
zf-C2H2_6
zf-C2HE
zf-C2H2_jaz
zf-H2C2_2
zf-C2HC_2
zf-C2H2_8
YceD
Motif
Other DBs
NCBI-GeneID:
125977711
NCBI-ProteinID:
XP_049590513
LinkDB
All DBs
Position
11:10763841..10772933
Genome browser
AA seq
1533 aa
AA seq
DB search
MLAVPTLPLRVRRRRGGEWRREDGEEDCDWCYGSSLILGSLSHPETSCCWLAGWLLVWYS
TVRGELRQPRDNSCTGGRKEKLSSLKKASRIDWADSPKTSRDKSVEMWDGEEGVKEEDEK
PLTQGPSKVTPTEMTDHRDVRDTSVDTMDGANEEEEEEEDANTLQGHDEAQGQPDSSLEG
IARGQSPSSPPQEADTDPDFDPLDLHGDSYPCQHCERHFSTRQGLERHIHIHTATGQQAQ
LFNCRYCSKSFGSQVGRRRHERRHESGLKKKPGSLAGTAHLLSPLVQTDISAPDRTSPTN
QYAAVGSQLTGGPAHYSETVRKESGPHADPPFVLDENGAPKELHPCKYCNKAFGTHTNMR
RHQRRIHERHLLPKGVRRKGMLLQEASAQPRPDASPNAGPALVYVPSADTEDETDRDDYV
VDISKNISENLSFYIDGKIVSTNTVSTCEVIEVDTRSAALFGLDAVIISPSQLSQALKVE
ARASTAKQSSNFYPAPSKRRTSTPPLLPGLKVETETASSSSPNSLIQQAADSSGFQREKT
VYLSPKLKQLLQTQDVQKSITFIADSHRLTSPLSVTPPQGPPSRFKRRTTSPPSSSQPGS
PFRAEACKAETVNPYALKVPKLENLSSSSLDKEDTAALSPCGSNVAQTSSGSGGGNTCNQ
QPLDLSNTVSRRSDTPNKVVGDSALDLSLHRKSVADPDVKGSAVPQLQVKKRKPNTSMLE
KVLMNEYVGLPLPTEEGPAPLANLAFQPQSPNVDSAHPSPPSLTPVTMNPSSPGTSSVTS
TTPPPPVLPTMPSPQAIANSPLSQPSDSSAQRPLPVLSPKMSPRSPQVPSEEAESLFAGD
EEEQHHSETLDSPDTPLQEPASPPAPLEPSSVSPSPTPDVSLTETSSSLLNGVTTRDLNS
GSPKSENSDLAAVLPRPESLRTSPPLLASHDPAPLLLPHAKIKEEPENHTDDASVKNHVP
QDDVDFSPQPLGKKPDKPPTTQKSDSTYCKTFVCNVCESPFGSMKELGGHIVEHASDRPF
KCEFCLQLFGDADALLAHRTTLHGVGTIFVCSLCSKEFAFLCNLQQHQKDLHPNDVCTHT
SVESGKLRPQNYTDPSRAKEEISISTPAQETRVEAPEQNDASPAKEKPDVNGNHANDGGE
DPNEELYTTIKIMASEGGKPKGPDVRLGQNQHYPSYKPPPFPYHSRSHAGSMASATNFTT
HNIPQTFTTAIRCTKCGNSFDNMPELHQHILACANASDKKRYTPKKNPIPLKQIVKSPNG
VASPSAGQSAFRRMGQPKRLNFNQDVNKTKMSALSKKKNQLVQKAISQKNKTATSAKKAA
IKVEEAQSNVCPHCGREFTYQASLGKHMAVSCPMKPAVKKKGKKKEAVSGAAEKNMSKKE
CEAAQTEPEPKPLGKTRARSSGAAELPEPPQTAKGKSVLKRPASFPAATPAAGKKAKKSQ
PQASPPHTPGDTAAQKQPVRLQRMGKATPKRLAEPKSSSPPQPKKEERFSLRMRERLGGP
VTRSAQMAAPAVEAKAEDAPTPELKDAPEVLMK
NT seq
4602 nt
NT seq
+upstream
nt +downstream
nt
atgctcgctgtcccaactctccccctcagggtgaggaggcggcgaggcggagagtggcga
cgggaggacggcgaggaggattgtgattggtgctacggctcatccctcattcttggcagc
ctatcgcacccggagacgagctgctgctggctggctggctggctgctggtgtggtacagc
accgtgcgaggcgagctgagacaaccccgagataacagctgcactggaggaagaaaggaa
aaactgtcgagcctgaagaaagcttctagaattgattgggccgactcgccgaaaacgagc
agagacaaatctgtggagatgtgggatggggaagaaggtgtgaaggaggaggatgagaag
ccactaacacaaggaccctccaaagtcacgcccacagaaatgaccgaccaccgagatgtg
cgggacacgtcagtcgacacgatggatggggcaaacgaggaagaggaggaagaagaggat
gccaacactttgcaaggccacgacgaagcacaggggcaacccgactcgtccctcgaaggt
atcgcgagaggccagtcgccgtcttccccgcctcaggaggctgacaccgatcccgacttc
gaccccttggatttgcacggagattcgtacccctgtcagcactgtgagcggcacttctcc
accaggcagggtctggagcgtcacatccacattcacaccgccactggccagcaagcgcag
ctcttcaattgcagatactgtagcaagtcctttggctctcaggtgggtcggcggcgccac
gagaggaggcatgagagcggcctcaagaagaagcccggctccttggccggaacggctcat
ctgctcagccctttggtgcagacggacatttccgctcccgaccgcacaagccctaccaat
caatacgccgccgtggggtcgcagcttacgggaggacccgcgcactattctgaaacggtg
aggaaggaatctggcccgcatgccgaccctcccttcgtcttggatgaaaacggggcgccc
aaagagctccatccttgcaagtactgtaacaaagcgtttggcacacacactaatatgcgg
cggcaccagcgccgaatacacgaacgacacttgttacccaagggcgttcgccggaaaggc
atgctactgcaggaggcgtcggcgcagccacggcccgatgcgtcgcccaatgccggcccc
gccctcgtgtacgtacccagcgccgacacagaagacgagaccgaccgggacgattatgtc
gtagacatatccaaaaacatctctgagaatttgagcttctacatcgatggcaaaatcgtg
tctaccaatacggtgagcacttgtgaggtcatcgaggtggacactcgatcggccgccctt
tttggtctggacgcggtcatcatcagccccagtcagctcagtcaggcgctcaaggtggag
gctcgggccagcaccgccaagcagtcgtccaacttctatccggctccttccaaaagacga
acgtcgacgccgcctcttcttcccggtctcaaagtcgagacagaaacggcatcgtcgtcc
tcgccgaactcgcttatccagcaagcggcagattcgtcgggattccaacgtgagaaaacc
gtttatctgtcaccgaagcttaagcagctcctccagacacaagacgttcagaagtccatc
acgttcatcgcggacagtcacaggctgacctcgccgctttccgtcacgccgccccaaggt
cccccgagtcggtttaaaaggcgaacgacctcacccccgtcgtcatcgcagccgggttcg
ccctttagagcagaggcttgcaaggctgagacggtgaacccgtacgccctcaaggtgcca
aagctggagaacctcagtagctcctctctggacaaggaagacaccgcagccttgagccct
tgtggaagtaacgtcgctcaaacctcctccggcagcggcggcggcaacacttgcaatcag
caacccttggacctgtccaacactgtcagtcgaagaagcgacacccccaacaaggtcgtc
ggcgattcggctcttgatttgagcttgcatcggaagagcgttgccgatccggacgtaaag
ggaagtgcagtgccgcagctgcaagtaaaaaagaggaagccaaacaccagcatgcttgaa
aaggtactgatgaacgagtacgtgggtttgcccttgccgacggaggagggacccgcgccg
ctcgccaacctggcttttcaaccgcagtctcccaatgtggattctgcccacccttcgcct
ccgtccttaacccccgtcaccatgaacccctcctcacccggcacctccagcgtgacatcc
acaacgccgccaccgcccgtactccccaccatgccatcgccgcaagcaatagcaaattct
cccctttcccagccctcggactcatcggcccagcggcctcttcctgtcctatcgccaaag
atgtcgccaaggtcgccgcaggttccctcggaagaggcagagagtttgttcgccggcgac
gaggaagagcagcatcattctgagacactggactcccccgacactccactccaagaacct
gccagtcctcctgcgccccttgagccgtcttcggtcagcccgtctcctacgccggacgtt
tctttgactgagacgagcagcagcctgctgaacggcgtaactaccagagatctcaactca
ggaagtccaaagtctgaaaactctgacttggctgccgttttgccccggccggagtctttg
cggacatcgccgcctcttctcgcttcacatgacccagccccgttgctgctcccacacgca
aagataaaagaggagcctgagaatcacacagatgacgcctctgtcaagaaccatgtgcct
caggatgatgttgatttttcaccgcagcctttgggaaagaaacccgataagccccccacc
acccaaaaaagcgactcgacttactgcaagacctttgtttgcaatgtatgcgagagcccg
tttgggtccatgaaggagctcggcgggcatatcgtcgagcacgcgtccgataggcccttc
aagtgtgagttctgtctgcagttgttcggcgacgctgacgcccttctcgcccaccggacc
acgctacacggggtgggcaccatcttcgtgtgctctctttgttccaaggagtttgccttt
ctctgcaatctgcaacagcaccaaaaagatttgcatccaaatgacgtctgcacgcatacc
tccgtggagagtggtaaactcaggccacaaaactacaccgacccatccagagccaaagaa
gaaattagcatctccacaccggcacaagagactcgtgtggaagcgccggaacaaaatgac
gctagtcccgccaaggaaaagcctgacgttaatgggaatcacgccaatgacggcggcgag
gaccccaatgaggagctctacactactataaagatcatggcctctgagggcgggaagccc
aaaggccccgacgtccgtctcggccagaaccagcattaccccagttacaagccgcccccc
tttccctatcacagccgttcccacgccggctccatggcatcggcgaccaacttcaccaca
cacaacatcccgcagacgttcaccaccgccatccgctgcaccaagtgcggcaacagcttt
gacaacatgcccgagctgcaccagcacattttggcttgcgccaatgccagcgacaagaag
cgctacactcccaaaaagaaccccatccctcttaagcaaatagtcaaatctcccaacgga
gtcgcgtcgccctcggcaggccagagcgccttccgaaggatgggccagccaaagcgactt
aactttaatcaggatgtgaacaaaacaaaaatgagtgccctcagtaagaagaaaaaccag
ctggttcagaaggctatttcacaaaagaacaaaaccgccacctcggcaaagaaggccgcc
attaaagttgaagaggcgcagagtaacgtctgcccccactgcggccgagagtttacttac
caggccagcctcggcaaacatatggccgtcagctgccccatgaagcctgccgtgaaaaaa
aagggcaagaaaaaagaagctgtgtctggtgcggcggagaaaaacatgagcaagaaagaa
tgtgaagcggcacaaacggagcctgaacccaaacccctcggaaagacgagagctcgcagc
tccggtgcggcggaactccccgaaccgccgcagacggcgaaaggcaaaagtgtgctgaag
aggcccgcgtcgttcccggcggcgacccccgccgccggcaaaaaagccaagaagagccag
cctcaggcatcgccaccacacactcccggtgacaccgcagcacagaagcaacccgtcagg
ttgcagcgaatgggcaaagcgacgcccaagaggttagccgagcccaaatcgtcgtctcca
ccacagcccaagaaagaagagcgcttctcccttcggatgcgggagaggctcggcggtccg
gtcaccaggagcgcgcagatggcagcccccgccgtggaggccaaagccgaggatgcaccg
acgcctgagctaaaagacgcgccggaggtgctgatgaagtaa
DBGET
integrated database retrieval system