Syngnathus scovelli (Gulf pipefish): 125977781
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Entry
125977781 CDS
T08785
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125977781
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sscv03041
]
125977781
03009 Ribosome biogenesis [BR:
sscv03009
]
125977781
Enzymes [BR:
sscv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125977781
Spliceosome [BR:
sscv03041
]
Complex A
U2 snRNP components
U2 related factors
125977781
Complex B
125977781
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
125977781
Ribosome biogenesis [BR:
sscv03009
]
Eukaryotic type
90S particles
Helicases
125977781
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
Flavi_DEAD
SRP54
AAA_23
AAA_30
Ctf4_C
SLFN-g3_helicase
T2SSE
AAA_7
AAA_29
Motif
Other DBs
NCBI-GeneID:
125977781
NCBI-ProteinID:
XP_049590646
LinkDB
All DBs
Position
Unknown
AA seq
712 aa
AA seq
DB search
MRRDRERVQGVDEWSRAGPRVQRGNMETDLKQPTEREHINPFTELPHTARYYQILKKRQQ
LPVWDYRENFTHILMNHQCFVIVGETGSGKTTQIPQWCVETIQSTVGAKRAVACTQPRRV
AAMSVARRVADEMDVTLGQEVGYSIRFEDCSSSKTVLKYLTDGMLLREAMSDPRLEHYAV
IVLDEAHERTLATDILMGVLKRVLRKRADLKIVIMSATLDAGKFQKFFDGCPLLSIPGRT
HPVEVFYTPEPERDYLEAAVRTVVQIHMCEQDPGDILLFLTGQEEIEEACKRIEAEVNDL
GPDAGEVKIIPLYSTLPSLQQQRIFEPPPANKTNGAIGRKVIVSTNIAETSVTIDGVVFV
IDPGFAKQKVYNPRIRVESLLVTAISKSSAQQRMGRAGRTRPGKCFRLYTEKTYRTEMQD
NAYPEILRSNLGSTVLQLKKLGIDDLVRFDFMDPPAPETLMRALELLNHLEALDDDGDLT
DLGVMMAEFPLDPQLAKMVVASCESGCSDEALSITAMLSVPQCFLRPPAAKKAADDAKMR
LAHPDGDHLTLLNVYLAFQQSHRSSQWCYDNFVSYRSLMAADSARLQLGRIIERLGLPRR
SCEGDDIHVRRALLTGFFMQVAHLERSGHYLTVKDKQVVQLHPSSVLGQKPEWLLYGEYV
LTAKNYIRMCSRIHPQWLLEIAPRYYEMSNFPPSEAKRQLQRINSQLSSKQL
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgtgaccgggagagggtccaaggtgttgatgagtggtcaagggctggccctcgt
gttcagcgtggaaacatggagaccgacttaaagcaacccaccgagcgagagcacatcaat
ccgttcaccgagctgccccacacggctcgctactaccagatcctcaaaaagcggcagcag
ctccctgtgtgggactaccgagagaacttcacacacatcctgatgaatcaccagtgtttt
gtcattgtaggagaaaccggttctggaaagaccacacagatcccccagtggtgtgtggaa
acgattcaatccacggtgggagctaagcgggcggttgcctgcacccagcccaggcgggtg
gcagccatgagcgtcgcccggagggtagccgatgaaatggacgtcacattgggccaagaa
gtgggctactccatccgctttgaggactgtagctcttccaagaccgtgctcaaatacttg
acggatgggatgttgctacgggaggccatgagcgacccacggctggagcactacgccgtc
atcgtgctggatgaagcccacgaacgtacgctcgctacagacatcctcatgggcgtcctc
aagcgggtgctccgaaaaagagccgacctcaagattgtcatcatgagcgccacgttggat
gccggcaagttccagaagttctttgacggctgcccgttgctgtccatccctggacgcacc
caccccgttgaggttttctacacgcccgaacccgagcgagactacctggaggcggccgtc
cgcacggtggtccagatccacatgtgcgaacaggacccaggggatattttactgttcctt
actgggcaagaggaaatcgaggaagcttgcaagcgcatcgaggcggaggtcaacgacctg
gggcctgatgccggcgaggtaaaaatcatccccctgtactccacgttgccgtcgctgcag
cagcagcggatcttcgagccacctcctgccaataaaaccaacggcgccatcggaaggaag
gtcatcgtgtcaacaaacatcgccgagacgtccgtcaccatcgacggtgtcgtgtttgtg
atcgatcctggatttgccaagcaaaaggtgtacaaccctcgcatccgagtggagtctctt
ttggtgacggccattagcaaatcgtcggcgcaacagaggatgggccgagccggacgcacg
cgtcccgggaagtgcttccgcctatacacggaaaaaacctacaggacagaaatgcaggac
aatgcctacccagagatcctcaggtccaatctgggctccacggtgctgcagctgaagaag
ttgggaattgacgacctggtgcgttttgacttcatggatccaccagctcccgagaccctg
atgcgagccctggagctgctcaaccacttggaggcgctggacgacgacggcgacctgact
gatctcggcgtcatgatggccgaattcccgctggatccgcagctggccaagatggtggtc
gccagctgcgagtcgggttgctcggacgaggcgctttccatcaccgccatgctgtcagtc
ccgcagtgcttcttgcgaccccccgcagccaaaaaggcggccgacgacgccaagatgcgt
ctggctcacccggacggagaccacctgactcttctcaacgtctacctcgccttccagcaa
agccaccgatcgtcgcagtggtgctacgacaactttgtcagctatcgctcgctgatggcg
gcggacagcgcacgcctccagctaggccggatcatcgagcgcttgggcttgccccggcga
agctgcgaaggggacgacatccacgtccgccgcgcgctacttaccggcttcttcatgcag
gttgctcacttggagcgcagcggtcactatttgacggtgaaggacaagcaggtggtccaa
cttcacccatccagcgtgctgggccaaaagcctgagtggctcctctacggcgagtatgtg
ctcaccgccaagaactacatccgcatgtgcagccgcatccacccgcagtggcttctggaa
atcgccccacgctactacgagatgagcaacttcccgccgagcgaagccaagagacagttg
cagcgcatcaacagccagctctcatccaagcaattgtga
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integrated database retrieval system
