Syngnathus scovelli (Gulf pipefish): 125978156
Help
Entry
125978156 CDS
T08785
Symbol
nfkb2
Name
(RefSeq) nuclear factor NF-kappa-B p100 subunit isoform X1
KO
K04469
nuclear factor of kappa light polypeptide gene enhancer in B-cells 2
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04010
MAPK signaling pathway
sscv04625
C-type lectin receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
125978156 (nfkb2)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
125978156 (nfkb2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125978156 (nfkb2)
Transcription factors [BR:
sscv03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
125978156 (nfkb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_3
Ank_5
Ank_4
Relaxase
Motif
Other DBs
NCBI-GeneID:
125978156
NCBI-ProteinID:
XP_049591206
LinkDB
All DBs
Position
12:13534938..13542997
Genome browser
AA seq
870 aa
AA seq
DB search
MTETQLINGYDDLQFNLTPYEYIPPVDVKTEAYVPETAHGPYVQIIEEPKQRGFRFRYEC
EGPSHGGLPGASSEKNRRTYPTVKINNYVGHARVEVQLVTHTDPPHVHAHSLVGRHCNES
GTCTLDVGPNDLTASFSNLGILHVTKKGVVEVLTRRLREERRRCRGGSAHLTAAEESALS
KDAKELSKIVDLNIVRLKFTAFLKDSNGGFTRALKAVVSNPIYDSKSPNASNLKISRIDK
TCGSVLGGDEIFLLCDKVQKDDIEIRFYEDEDGGWEAFGDFAPTDVHKQYAIVFKTPPYH
TAELERPVTVFLQLKRKKAGDCSDPKHFTYIPHVQDKEEVLKKKQKPLPHYEPWRGGGER
GGGAGGGFGGATGEGFHFSQHMNGAAGGGGVFYSGSIVGFGGRGAHMAGSAAQHGQLSVV
GRTPRCAFIAAFQARASGATCRAREALLRYCMSGDARFLLRPHGCLCAMPDASGDTPLHL
AVIHQQTAVACQLIDTFLSNGQGHLLDVSNHLRQTPLHLAVVTRQACVVEALMKAGVDPG
LRDRDGRCPLHLAALGGDVATLRAALSNLGQAHAHLLITADYHGLAPLHLAVRRNGHRCL
RLLVESGAKVDAPELKGGHTALHMAVEQNLLKVACTLVTELKADVNAHTFGGNTPLHLAA
AAHAHTLCSVLLAAGADKDAENDEPLVLSSSDEDEEVVGTEASSQSRGCRKRRTAGHTPL
DLTTCQKVRKLLTSASAWQAAEKSQGKADGERWHADACTLRDLEEVLSDAGVPWNKLADR
LGMMTLAHLYQDSPAPYHSLLKHYQLGGGPVEDVLEALESLGVHDGVRLLRRHHGTDVRA
AQDKLRQESTMDSGFGSQLVEDERPPAANH
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgacggaaactcagttgatcaacggctacgacgatttacagtttaatttgacgccctat
gaatacattcctcctgtggacgtgaagactgaagcgtacgtacctgagacagcgcatggc
ccgtatgtccaaatcatcgaagagcccaaacagcggggatttcgctttcgttacgagtgt
gagggtccttcgcacggaggcctgccaggagcctccagcgagaagaacagaaggacgtac
cccaccgtcaagatcaacaactacgtgggtcacgcgcgtgtggaggtccagttggtgact
cacacggacccgccgcacgtgcacgctcacagcctggtgggacgccactgcaacgagagc
gggacatgcaccctggacgtgggacccaacgacctgaccgcctctttcagcaacctgggc
atcctccatgtgaccaagaaaggtgtggtggaggttcttacgcgtcggctgcgagaggaa
cggcgtcggtgtcggggaggttcggcccacctgacggcggccgaggagagcgccctgagc
aaggacgccaaggagctgtccaagatagtggacctcaacatcgttagactcaagttcacc
gccttcctgaaggacagcaacggaggattcacgagagcgctcaaggctgtggtgtccaac
cccatctacgacagcaaatctcccaacgcatccaacttgaagatctcccggatcgacaag
acatgcggatccgtgctcggaggagacgagatcttcctcctgtgtgacaaagtccaaaaa
gacgacattgagatccgcttttacgaggacgaggatggcggctgggaggctttcggagac
tttgctccaacagacgtccacaaacagtacgccatcgtgttcaagacgccaccgtaccac
accgcagagctcgagcggcccgtcactgtcttcttgcaactcaagaggaagaaggcgggt
gactgcagtgaccccaaacacttcacatacataccgcacgttcaagacaaagaggaggtg
ctgaagaagaaacaaaagcccctcccccactatgagccctggcgagggggcggtgaacga
ggaggaggagccggcggcggctttgggggcgccacaggtgaaggttttcacttcagccaa
cacatgaatggcgcggcgggaggcggtggagttttctattcggggagcatcgttgggttt
ggaggaagaggagcacacatggcgggctctgccgcccagcacggacaactgtcagtcgtt
ggtaggacaccccgctgcgcattcatagccgccttccaggccagagcatctggcgccacc
tgtcgggcgcgtgaagccctcctgcggtactgcatgagtggtgacgctcgcttccttctg
cggccacacggatgcctatgtgccatgccagacgccagcggagacactcccctgcacctg
gcggtcatccatcagcagacggccgtcgcctgccagctgattgacacctttcttagcaac
gggcagggacaccttctcgacgtgtccaaccacctgcggcagactccactgcacctggcg
gtggtgacacgtcaagcatgcgtggtggaggccctgatgaaggcgggggtggaccctggc
ctgcgggacagagatgggcgctgcccgctgcaccttgcagcgctgggcggcgacgtagcc
acgctacgcgccgcgctgtccaacctgggccaagcacatgcccacctcttgatcacagcc
gattaccatggtttggccccacttcacctggcggttcgtcgcaacggtcatcggtgttta
cggctgctggtggaaagtggcgctaaggtggacgcacccgagctgaagggaggacacacg
gctctgcacatggctgtggagcaaaacctcctcaaggttgcctgcacgctggtcaccgag
ttgaaggcggacgtgaacgctcacacttttggaggaaacacgccacttcatctggccgct
gccgcacacgcgcacacgctgtgctccgtgctgctcgctgccggtgcggacaaagacgcg
gagaatgatgagccactggtcttaagttcctctgacgaggacgaggaggtggtggggacc
gaagcatcctcgcagtcaaggggctgccgtaagaggcgaacggccggtcacacaccgctg
gacctgaccacgtgtcagaaggtcaggaagctgctgacgtctgcatcggcgtggcaggct
gctgagaagagccaaggcaaagcagatggggagcgttggcacgccgacgcctgtacgctt
cgtgacctggaggaggtactgagcgacgctggtgttccatggaacaaattagccgacaga
ctggggatgatgacgctggctcacctctaccaggatagccccgccccctaccacagcctc
ctgaaacactaccagctgggcggtggtcccgtggaagacgtgctggaggccttggagtca
ctgggcgtccatgacggcgtccgcttgctgcgccgccaccacggcaccgacgtgcgcgca
gcgcaagacaaactcagacaagaatcgacgatggacagcggctttggcagtcagcttgta
gaagacgagcggccgcctgcagccaatcattga
DBGET
integrated database retrieval system
