Syngnathus scovelli (Gulf pipefish): 125978167
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Entry
125978167 CDS
T08785
Symbol
vsx1
Name
(RefSeq) visual system homeobox 1 isoform X1
KO
K09335
visual system homeobox protein 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125978167 (vsx1)
Transcription factors [BR:
sscv03000
]
Eukaryotic type
Helix-turn-helix
Homeo domain Paired-related
125978167 (vsx1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Homeodomain
Homeobox_KN
Motif
Other DBs
NCBI-GeneID:
125978167
NCBI-ProteinID:
XP_049591252
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Position
12:13452393..13455925
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AA seq
353 aa
AA seq
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MSEVMQDKSKVKLLPPAFPDKSQLQSSGLRSKGFAITDLLGLESASASSGGGEAQSGAGL
GLGQTLGSAFSFPGASLPLGLGFLCSLAAQRPPGPTGGPPCFLPGHLPLLQRPDGHFVHS
ADPHRDTFSDDEILSDHESKSCSASQKRKKRRHRTVFTSHQLEELEKAFHEAHYPDVYAR
EMLAVKTELPEDRIQVWFQNRRAKWRKREKCWGRSSVMAEYGLYGAMVRHSIPLPESILN
SAKNGMMSSCAPWLLGEPHARMHRKSLEMSSKKTTASHPDRLDSMRTSDACCHTPDVEEA
EPEAAGHRKEDKENAEGEEDEEEEEEEEEAMDLSSSSKQQQLLQSEIGAQQLC
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaagtgatgcaggacaagtccaaagtcaagttgttgcctcccgcatttcccgac
aagtcccagcttcaaagttcaggcttgcggtccaagggcttcgccatcacggacctcctg
ggcctcgagtccgcatctgcgtcgtccgggggtggcgaggctcagagtggcgctggcttg
gggctgggccagaccctgggcagcgccttttctttcccaggggcttccctcccgctgggt
ctgggcttcctgtgcagtctggcggctcagcggccgcccgggcccactggaggacctccc
tgcttcttgccaggtcacttgccgctcctgcagagacccgacggccatttcgtgcacagc
gccgacccccacagggataccttctccgatgatgagattctgtccgaccacgagtccaaa
agttgttcggcttctcagaagaggaagaagcggcgccacaggaccgtcttcacgtcccac
cagctggaagaactggagaaagccttccacgaggcccactaccccgacgtctacgctcga
gagatgctcgccgtcaagacggagctgcccgaggaccgcattcaggtgtggttccagaac
cggcgcgccaagtggcgcaagcgtgagaagtgctggggccgcagcagcgtgatggccgag
tacggcctctacggggccatggtgcgtcactctatcccgctccctgagtccatcctcaac
tcggctaagaatggcatgatgagctcctgcgccccctggctgctcggtgagccgcatgca
cgaatgcacaggaagtctctggaaatgtcatccaaaaagaccaccgcatcccatcctgac
cgattggactcaatgcgcacttccgacgcctgctgccacacccctgatgtggaggaggcg
gagcctgaggccgctgggcaccggaaggaagacaaggagaatgcagagggggaggaggat
gaggaggaggaggaggaggaagaggaggccatggatttgtctagctcctccaaacagcag
cagctgctgcagagcgagatcggcgcccaacagctgtgctga
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