Syngnathus scovelli (Gulf pipefish): 125978257
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Entry
125978257 CDS
T08785
Name
(RefSeq) elongation factor 1-alpha 1
KO
K03231
elongation factor 1-alpha
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125978257
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125978257
03016 Transfer RNA biogenesis [BR:
sscv03016
]
125978257
03012 Translation factors [BR:
sscv03012
]
125978257
04131 Membrane trafficking [BR:
sscv04131
]
125978257
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sscv04147
]
125978257
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
125978257
Transfer RNA biogenesis [BR:
sscv03016
]
Eukaryotic type
tRNA transport factors
tRNA export factors
125978257
Translation factors [BR:
sscv03012
]
Eukaryotic type
Elongation factors
125978257
Membrane trafficking [BR:
sscv04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Other CMA associated proteins
125978257
Exosome [BR:
sscv04147
]
Exosomal proteins
Proteins found in most exosomes
125978257
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
Gtr1_RagA
FcpA
Motif
Other DBs
NCBI-GeneID:
125978257
NCBI-ProteinID:
XP_049591391
LinkDB
All DBs
Position
12:complement(2647096..2650978)
Genome browser
AA seq
462 aa
AA seq
DB search
MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVL
DKLKAERERGITIDISLWKFETTKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGV
GEFEAGISKNGQTREHALLAYTLGVKQLIVGINKMDSTEPNYSQKRYEEIVKEVSTYIKK
IGYNPDTVPFVPISGWNGDNMLDASPNMQWFKGWKINRKDGNASGTTLLEALDAIQPPTR
PTDKPLRLPLQDVYKIGGIGTVPVGRVETGILKPGMVVTFAPVNITTEVKSVEMHHEALS
EALPGDNVGFNVKNVSVKDIRRGNVAGDSKSDPPQEAASFTAQVIILNHPGQISAGYAPV
LDCHTAHIACKFAELKEKIDRRSGKKLEDNPKTLKSGDAAIVDMTPGKPMCVESFSEYPP
LGRFAVRDMRQTVAVGVIKAVEKKASTAGKITKSAQKAQRNK
NT seq
1389 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaggagaaggtccacatcaacatcgtggtgatcggccacgtggattcaggcaag
tccaccacaacgggccacctcatctacaagtgcggcggcattgacaagcggaccatcgag
aagtttgagaaggaggctgccgagatggggaaggggtccttcaagtatgcctgggtgctg
gacaagttgaaggcagagagagaacgtgggatcaccatcgatatctcgttgtggaagttc
gagacgaccaagtattacgtgaccatcatcgacgctccgggacacagggacttcatcaag
aacatgatcaccgggacctcgcaggccgattgcgctgtgttgatcgtggccgccggtgtg
ggggagttcgaggccgggatctccaagaacgggcagacccgcgagcatgccctgttagcc
tacacgctcggcgtgaagcagctcatcgtgggcatcaacaaaatggactccaccgagccc
aactatagccagaagcgctatgaagaaatcgtcaaggaagtcagcacctacatcaagaag
ataggctacaatccggacaccgtacctttcgtgcccatctcgggctggaatggcgacaac
atgcttgatgccagccccaatatgcaatggtttaaggggtggaagattaacaggaaggat
ggcaacgcatcggggacgacgctgcttgaagctctggacgctattcagccacccacccgt
ccaacggacaaacctctccgtctcccccttcaagatgtttacaagattggaggcattggc
accgttccggtaggccgagtggaaacgggcatcctgaagcccggcatggtggtgacgttc
gcccccgtcaacataaccaccgaggtgaagtcagtggagatgcaccacgaggcgctctcc
gaggccctgcccggtgacaacgtcggcttcaatgtcaaaaacgtgtccgtgaaggacatc
cgccgcggcaatgtggccggtgacagcaagagtgatccgccgcaggaggctgctagcttc
actgctcaggtcatcatcctcaaccacccaggccagatcagtgccggatacgccccagtg
ttggactgtcacacggctcacattgcctgcaagtttgccgagctcaaggaaaaaattgac
cgccgctcgggcaagaagctggaggacaatcccaaaaccctcaaatctggagatgctgcc
atcgttgacatgactccgggcaagcccatgtgtgtggagagcttctccgagtacccccca
ctgggtcgctttgcagtgcgcgacatgcgccagacggtggccgtaggtgtcatcaaggcc
gtggagaagaaggcctccaccgctggcaaaatcaccaagtctgcccagaaggcccagagg
aacaaatga
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