Syngnathus scovelli (Gulf pipefish): 125978419
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Entry
125978419 CDS
T08785
Symbol
thbs2a
Name
(RefSeq) thrombospondin-2
KO
K04659
thrombospondin 2/3/4/5
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04145
Phagosome
sscv04510
Focal adhesion
sscv04512
ECM-receptor interaction
sscv04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
125978419 (thbs2a)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
125978419 (thbs2a)
09144 Cellular community - eukaryotes
04510 Focal adhesion
125978419 (thbs2a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125978419 (thbs2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125978419 (thbs2a)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
sscv04147
]
125978419 (thbs2a)
00536 Glycosaminoglycan binding proteins [BR:
sscv00536
]
125978419 (thbs2a)
Membrane trafficking [BR:
sscv04131
]
Endocytosis
Phagocytosis
Opsonins
125978419 (thbs2a)
Exosome [BR:
sscv04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
125978419 (thbs2a)
Exosomal proteins of colorectal cancer cells
125978419 (thbs2a)
Exosomal proteins of bladder cancer cells
125978419 (thbs2a)
Glycosaminoglycan binding proteins [BR:
sscv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125978419 (thbs2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
TSP1_ADAMTS
cEGF
Laminin_G_3
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
125978419
NCBI-ProteinID:
XP_049591723
LinkDB
All DBs
Position
12:8774479..8789175
Genome browser
AA seq
1181 aa
AA seq
DB search
MILRLLLPSLLFLHALAQDGEQEDDTSFDLFEVSHISRRTLGAKQFRGQNSDAPAYRFIR
FDHLPPVSPAILGQIMRQIQHNEGFVFVASIRQDRSSRGTLLGFEDAEGRRQFEIVSNGR
ANSLDLVYWLEGAQNIVSFEDVDLSDSQWKNLTLQVHGENANLYVGCSLVDSVILDEPFY
EHLQAEGSRMYVAKGSIRENHFRGLLQNVRFIFDTTIEDILLSRGCDISKQDDANIVSES
SEIVDVSPSITTNIIGQKRDDVGSEMCDRSCEELSTMFQELNGLRVVVSNLIDGLQKVTE
ENTVMKEALGKMKNTKEKNMCWQDGRLFDDKEDWVVDSCTKCTCQESKVVCHQITCPAVA
CASPTFVDGECCPVCLPKGSDHGWSPWSEWTECTVTCGTGTQQRGRSCDATSNPCTGPSI
QTRKCSPGRCDSRVRQDGGWSLWSPWSSCSVTCGEGQITRIRHCNAPMPQLGGKDCEGNG
RETQRCTAEPCPIDGGWGPWSPWATCSASCGGGIKSRKRECNSPHPQYGGRKCIGEVNDR
DSCNKKDCPVDGCLSNPCFGGVDCTSSPDGSWECGPCPDGYRGNGTNCEDINECDMVSDI
CFNAGGSQRCVNTDPGFHCLPCPKRYKGTQPFGMGVEKAKKNKQVCEPENPCKDKTHNCH
RSAECIYLSHFSEPMFKCECRTGYAGDGYICGEDSDLDGWPNQNLVCGANATYHCKKDNC
PSLPNSGQEDFDKDGQGDACDKDDDNDGILDERDNCALLYNPRQFDFDKDEVGDRCDNCP
YEHNPNQIDTDHNGEGDACAIDIDGDEILNENDNCPLVYNTDQKDTDMDGVGDQCDNCPL
LHNPLQMDIDNDLVGDQCDNNQDIDEDGHQNNQDNCPYVANANQADHDKDGKGDACDFDD
DDDGVPDDKDNCRLTPNADQLDSDGDGRGDACKDDFDNDNIPDILDVCPENSAISSTDFR
KFQMVHLDPKGTTQIDPNWVVRHQGKELVQTANSDPGIAVGFDEFSAVDFSGTMYVNTDR
DDDYAGFVFGYQSSGRFYVVMWKQITQTYWEDKPSKAFGISGVSLKVVNSTTGTGEHLRN
ALWHTGNTPGEVRTLWHDPKNIGWKDYTAYRWHLIHRPKTGFIRVVVYEGKQIMADSGPV
YDKTFAGGRLGLFVFSQELVFFSDLKYECRDELDLPTRLTR
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgatactcagattattgctcccatcactcctcttcctccacgcgctcgctcaagatggc
gagcaggaggatgacacctccttcgacttgttcgaagttagtcacatcagccgcaggacg
ctgggggctaaacaattccgtggccagaattctgatgcccccgcataccgcttcatccgt
ttcgaccacctgcccccagtgagccccgccatcctcgggcaaataatgcgacagatccaa
cacaacgagggcttcgtgttcgtggccagcatccgccaggatcgcagctctcggggcacc
ctgctgggcttcgaggatgccgagggccggcgccagtttgagatcgtgtccaatggacgc
gcaaactccctggacctggtctactggctggaaggggctcaaaacatcgtttcgttcgag
gacgtggacctgtccgactcccagtggaagaatctgaccctgcaggtccacggagagaat
gccaacctgtacgtgggctgcagcctggtggacagcgtcatcctggacgagcctttctat
gagcacctgcaggccgagggtagccgcatgtatgttgccaagggatccatccgggagaac
cacttcaggggtctcctacagaatgtgcgcttcatctttgataccacaattgaggacatc
ctgctgagtcgaggctgtgacatctctaagcaagatgatgccaacattgtgagcgagagc
tcagagattgtggatgtgagtccttccatcaccaccaacatcattgggcagaaaagagat
gacgtgggctctgagatgtgcgaccgttcctgcgaggagctgagcactatgtttcaggag
ctcaatggtctcagagtggttgtcagtaatcttattgacggcctgcaaaaagtgacggag
gagaacaccgtcatgaaggaggccctcggaaagatgaaaaacaccaaggagaagaacatg
tgctggcaggatggccgactcttcgacgacaaggaagactgggttgtcgacagctgcacc
aaatgtacctgccaggagtccaaggtagtgtgtcaccaaattacctgccccgcagtggcc
tgtgccagccctacattcgtcgatggcgagtgttgtcctgtgtgtctgccaaaaggcagc
gaccatggctggtccccgtggtctgagtggacagagtgcacagtcacctgcgggactgga
actcaacagaggggacggtcatgtgacgcaaccagtaacccctgcacaggaccttcgata
caaactcgcaagtgcagcccaggaagatgtgacagtcgcgttcgccaggatggtggatgg
agcttgtggtcaccttggtcatcctgctcggtgacatgtggagagggccagatcaccagg
atacgccactgtaatgcccccatgcctcagctggggggcaaagactgcgaagggaacggc
agagaaactcagcgctgtactgcagagccgtgtccgatcgatggaggttgggggccttgg
tctccatgggcaacctgctcagcatcatgcggtggtgggatcaaaagtcgcaaacgtgaa
tgcaacagccctcatcctcagtatggtggcaggaagtgtatcggagaggtcaatgacagg
gacagctgcaataaaaaagactgtcccgttgatggctgcttatctaacccctgctttggg
ggtgtggactgcaccagttctccagatggctcctgggagtgtgggccatgcccagatggt
taccgtggcaatgggaccaactgtgaagatatcaatgagtgtgacatggtgtctgacatc
tgcttcaacgcgggtggatcgcagcgatgcgtcaacaccgatccaggtttccactgcttg
ccctgtcctaaacgctacaagggcacacaacctttcgggatgggcgtggagaaggctaag
aagaacaagcaggtgtgcgagccagagaatccctgcaaggacaagacacacaactgtcat
agatctgctgaatgtatttacctcagccatttcagtgagccaatgttcaagtgtgagtgt
cgtaccggttatgctggtgatggctatatctgcggggaggactctgacctcgatggctgg
cctaatcagaaccttgtttgtggagccaatgccacctaccattgcaagaaggacaactgc
cccagcctacccaactctggacaagaagactttgacaaagatggccaaggagacgcttgt
gataaagatgatgacaatgacggaatcttggatgaaagggacaactgcgccctcctttac
aaccctcggcagtttgactttgacaaggatgaagtaggtgaccgttgtgataactgccct
tatgagcacaatcctaaccagattgacacggaccacaacggggaaggagatgcctgtgct
atagacattgatggagatgaaatcctcaatgagaatgacaactgccctctcgtttacaat
acggaccagaaggacacagacatggatggagttggtgaccagtgtgataattgtccccta
ctgcacaatcctctgcagatggacatagacaacgacttggttggagatcagtgtgacaac
aatcaggatattgacgaagacggccatcagaataaccaggacaactgtccgtacgtggcc
aacgccaaccaggctgaccacgacaaggacggcaaaggagatgcatgtgactttgatgat
gatgatgacggagtgcccgatgacaaggacaactgcagactgacccccaacgcagaccaa
ctggactctgacggtgatggaagaggtgatgcttgcaaagatgactttgacaatgacaat
atcccagatatcctcgacgtgtgtccggagaacagcgccatcagcagcacagacttcagg
aagttccagatggtccacttggacccgaagggaaccactcaaatcgatcccaactgggtg
gtgaggcaccagggcaaagagttagtgcagactgccaactctgacccaggcattgccgta
ggcttcgatgagttcagtgctgtggatttcagtggcacaatgtacgtcaacacagacagg
gacgatgactatgcaggcttcgtttttggctaccagtcgagcgggcgcttttatgtggta
atgtggaagcagatcacacaaacttactgggaggacaagccctccaaggccttcggcatt
tctggcgtgtcactcaaagtggtcaactccaccaccggcactggagaacacctcaggaat
gctttgtggcacacgggcaacactcctggagaggtacgcactctgtggcatgaccccaaa
aatattggatggaaagattacacagcttacaggtggcacctcatccatagaccgaagact
ggtttcatcagagttgttgtatatgagggtaagcaaatcatggctgactcgggaccagtt
tatgacaagacgtttgctggcggaaggttaggattgttcgtcttctcccaagaactggtc
ttcttctcggacctcaaatatgagtgcagagatgagctggacttgccgacaaggttgaca
agataa
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integrated database retrieval system
