Syngnathus scovelli (Gulf pipefish): 125978457
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Entry
125978457 CDS
T08785
Symbol
rims1a
Name
(RefSeq) regulating synaptic membrane exocytosis protein 1 isoform X1
KO
K15291
regulating synaptic membrane exocytosis protein 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125978457 (rims1a)
Membrane trafficking [BR:
sscv04131
]
Exocytosis
Calcium ion-dependent exocytosis
Acrosomal exocytosis proteins
125978457 (rims1a)
Small GTPases and associated proteins
Rab associated proteins
125978457 (rims1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
RIM2a_ZnF
PDZ
FYVE_2
Zn_ribbon_Nudix
Zn_ribbon_recom
Motif
Other DBs
NCBI-GeneID:
125978457
NCBI-ProteinID:
XP_049591776
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All DBs
Position
12:complement(5810053..5843166)
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AA seq
1456 aa
AA seq
DB search
MFASVGPRGPPVAQAIPEPDLSHLTEDERKIIMAVLARQREEEAKEEAMLKEEKPIQART
VNLVGQKKPLQQNDVRGIQQQLSSYRETVIRQATAAAGSAVHRDDAPTCGICQKTKFADG
CGNLCSYCQTKFCARCGGRVSLRSNTEDKVVIWVCNNCRKQQEILTKPGEWFTGSSGKPT
GLGSAISEPSVCQTLGDKKLRSHSQAPPGSTTSLDPNTASAAGSTAGTDVRSRSEPPRDT
RNGRGGGGTGRAERRPGQPMLQTQVSMDRDLRGESRESRRLTKGRSLDIDPVGGSGGLKR
TQEGGHQHIGHSRGPPHQAGPVLPGGRGHPVPVQGSGTGVMAELRDGLVSGQRTVGGLSE
HTLAQQDHPPQLREPLSSGPGSAPGQGHVVRRTKRNKADSMLRNDSLSSDQSESLRPPPP
RPYKSKRGLGAGGKRQTSVSSSEEEGGTTPEYSSCEDAEIESVSERGDWECYPHDPTVWH
FSFFLLQHPVTWQPSKEGDHLIGRITLSKRSTTMPKEAGALLGLKVVGGRITESGRLGAF
ITKVKKGSLADVVGHLRAGDEVLQWNGKLLPGATMKEVYNIILESQAEPQVELVVSRPIG
VYRKYHDIPRIPDTSHPPLESTGSSSFESQKMERPSKNLLSPTSPRMILDAPQLMPGKLS
VKLWYDKAGHQLIVNVLQAVELPLRPDGRPRSPYVKMYFLPDRSDKSKRRTKAVKKTCEP
KWNQTFLYTHIHRRDFRNHMLELTVWDQPRSPEEDSIFMGEILIELETALLDDKPHWYPL
QTHDVSSIPLPRPSPYLPRRHIHADNPGRKLQRSQRVTEPEFEGTAVVSKAEGRGRERQR
EPTSTLEVPECQRTPSHHIRSRSVSPHREEKGCIRSRPANVPAQRSLDDELSHPRRSRSP
SRYYDSSRGHHTDQEYLDDSEVIMIHQSMRGKSAECIHLSDLQPSLDRVRSASTNCLTPD
NHVPSPELERKSLSHSLPRRRPPSPRIFIQHASPEDDRGHHEGGTPLSMTSSSSRKVRQL
PQLPPKSNSVEQALVAEERVRQLQMRVHSNRMSATVSNSSQQDLDRALKNKRELFKDHRT
SSENASHKSSDSDVSDVSAISRTSSASRISSTSYMSIQSERPRGRFSRAMRATGRHIMKS
TSVSGEIYGMEHADGSQSDTALGSLGSGIKKRRSSLSQRVVAILPSRRSRSTSQLSQTEA
AGKAVDRQKEAPAGKKVAKGGGGSSIQRSVETGMAVEYPRGGSAMNRQASRESTDGSMNS
YTSEGNLIFSGMRLGADSQFSDFLGGLGPGQLVGRQTLATPAMGDVQIGLMDKKGQLEVE
VIRARGLTPKPGSKSLPAPYVKVYLLDNGSCKAKKKTKIARKTLEPLYQQHLLFDESPQG
KVLQVIVWGDYGRLDHKCFMGVAQILLEDLDLSSTVIGWYKLFPPSSLVDPTLAPLTRLA
SQTSLDSSGPPPGVRS
NT seq
4371 nt
NT seq
+upstream
nt +downstream
nt
atgtttgcctcagtaggccctcggggtccacccgtcgctcaggccatcccagagcccgac
ttgagccacttgaccgaggacgagaggaagatcatcatggctgtgctggctcggcaacgg
gaggaagaagcaaaggaggaggccatgctaaaagaagagaagcctatccaagcgagaaca
gtaaacttggtcgggcagaaaaaacctctgcagcaaaacgatgtccggggcatccagcag
cagctttccagctacagggagacggtgatcaggcaggccacagctgcagcaggctcggcg
gttcacagagacgacgcacctacctgcggcatctgccagaagaccaagtttgcagatggt
tgtgggaacttgtgctcgtactgccagaccaagttctgtgcccgctgcggagggagggtc
tcgcttcgatccaatacggaggacaaagtggtcatctgggtttgtaataactgccgaaaa
caacaggagatactgaccaagccaggcgaatggttcaccggttcgtcaggaaagcccacc
ggtctcggatcagccatcagcgagccatctgtgtgccaaacccttggtgataagaagctc
cgatcccactcccaagcccctccgggctccacaacatccctagaccccaacacagccagt
gcagccgggagcacggctggaacagacgttcggtcacgaagtgaaccgccaagagacacg
agaaacggaagagggggtggaggaactggtcgggcagagcgcaggccaggccagcccatg
ctgcaaacccaggtttccatggaccgagacctccggggcgaatccagggaaagccgacga
ctcacgaaaggacgttcattggacatcgatccagtcggaggaagcggtgggttgaaacgg
acacaagaagggggccaccaacacattggccacagtcgtggcccccctcatcaagcaggg
ccagtccttcccggaggtcggggtcatcctgtaccagtgcaaggcagtggaacaggagtt
atggcagagttgagggacggtttagtctctggacagaggaccgtcggtggattgagtgaa
cacacccttgcgcaacaagaccacccccctcaactcagagaacctttgagttcagggccc
ggatcagcccccggtcaggggcatgtcgtgagacgaaccaaaaggaacaaagctgacagc
atgctacgcaatgattcgctcagctctgatcaatcggaatctctgcgtccgccaccacct
cgaccctacaaatcaaagcgagggctgggagctggaggcaagaggcagaccagtgtcagc
agctcagaagaagagggagggaccacaccggaatacagcagttgtgaggatgctgagatt
gaaagtgtgagcgagagaggtgactgggaatgctaccctcatgaccccactgtgtggcat
ttctcgttttttttgctgcagcatcctgtaacctggcaaccatccaaggagggtgaccat
ctgattggcagaatcacccttagcaagaggagcacaaccatgcctaaagaagccggggct
ctgctgggattaaaggtggtgggaggtagaataacagagtcagggagattaggtgccttc
atcaccaaggtcaaaaagggcagcctggctgatgtggttggacatctaagagcaggggat
gaagttttgcagtggaatgggaaactgttaccaggagccaccatgaaggaagtttacaac
atcatcctggaatcgcaagcagagccccaagtcgagctagttgtatcccggcctattggg
gtgtatagaaaatatcatgatatcccaagaatcccagacacatcccatcctccattagaa
tctacaggttcgagttcatttgagtcccagaagatggagcgaccatcaaaaaatctttta
tctcccaccagtcccagaatgattctagacgctccacagctaatgccaggaaaactttct
gtgaagctgtggtacgacaaagcaggtcaccagttaatagtcaatgtgcttcaggcggta
gagctccctctccggcctgatggacgacccagaagtccatacgtcaaaatgtactttctt
cctgatcgcagtgacaaaagtaaacgcaggacaaaagcagtgaagaagacctgcgaaccc
aagtggaaccaaacattcctctacactcacatccatcgtagggatttccgcaaccatatg
ctggagctgaccgtatgggaccagcctaggtcaccagaggaggacagcatctttatggga
gaaattctgattgagctggagacagctctgctggatgacaagccacactggtatcccctc
caaacgcacgatgtctcatccataccgctcccccgcccctccccgtatctgcctcgtcga
cacatacacgccgacaaccctggcaggaagctgcagcgttcgcagcgtgtaacagagcct
gagtttgagggtacagcagtagtttctaaagcagagggacgtggcagggagcgacaacgg
gagcccacgtccaccctggaggtgcctgagtgccagaggacgccctcacatcatatacgt
tcccgctcagtatccccccaccgcgaggagaagggatgtatacgatcccgaccggccaat
gtccctgcgcagaggagtctggacgatgagctttcgcaccccaggcgttctcggtctccg
agccgctactacgactcctctcgaggtcaccacacggatcaggaatacctcgatgacagt
gaggtcatcatgatccaccaatcaatgcgaggcaaaagtgctgagtgcatccacttaagt
gatcttcagccttctctggacagggttaggagtgctagcaccaactgtctgactccagat
aatcatgtcccctcacctgagttggaaagaaaatcattgtcccattcgttgccccggaga
cgtcccccgagtccccggatttttatccaacatgcttcccctgaagatgacaggggccac
cacgaaggtggtacacctctttcaatgacatcatcctcatctcgcaaagtgaggcagctc
ccccagcttccccccaagagcaacagtgtagaacaagccctggtagcagaggagcgcgtc
cgtcaactccaaatgagggttcattcgaaccggatgtcagctactgtcagtaactccagc
cagcaggacctggaccgagcgctcaagaacaaacgagagctcttcaaggaccacaggacg
agcagtgagaatgcttcccataagtcctcagacagtgatgtcagcgacgtatcagccatc
tctcgaaccagcagtgcctctcggattagtagcaccagctacatgtccatccagtcagag
agacccagaggacgcttcagtcgagccatgcgtgcgacgggccgccacatcatgaagagc
accagcgtgagtggcgagatctacggcatggagcacgcagatggcagccaatcggacacc
gccctgggaagcttgggaagtgggatcaaaaagcggcgctccagcctcagccaacgtgtt
gttgccatcttgccgtcgaggcgcagtcggagtacctcacagctcagccagacagaagcg
gctggtaaggcggtggacagacagaaagaggcaccagcaggtaagaaggtggccaagggt
ggcgggggcagcagcatccaaaggagcgtggagacgggcatggcagtggagtacccacga
ggaggctcagccatgaaccgtcaggccagtagagaatccaccgatggcagcatgaacagc
tacacctctgagggaaatcttatcttctcaggaatgagactgggtgctgacagccagttc
agtgactttctaggtggtctaggacctggtcagctggttggccggcaaacactggcaaca
cctgcaatgggtgatgttcaaattggtttgatggataagaaaggacagttggaggtggag
gtgatcagggcacgaggccttacccccaaaccaggctccaaatccctcccagctccctat
gtcaaggtgtacctactggataatggaagttgtaaagccaaaaagaaaactaagattgca
cgaaagaccctggagcctctgtaccagcagcatctgctatttgacgagagtccccagggc
aaggtgcttcaggtgatagtgtggggggactatggacgattggaccacaaatgttttatg
ggtgtagcacagatcttattggaagatttggacctatcgagcacggtgattggatggtac
aaactctttccaccatcctcgttggtagatcccactctagctccactcacgcgactggcg
tctcagacatcattggacagctcaggaccacccccgggtgttcggtcctag
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