Syngnathus scovelli (Gulf pipefish): 125978555
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Entry
125978555 CDS
T08785
Symbol
ercc6
Name
(RefSeq) DNA excision repair protein ERCC-6
KO
K10841
DNA excision repair protein ERCC-6
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
125978555 (ercc6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sscv03036
]
125978555 (ercc6)
03400 DNA repair and recombination proteins [BR:
sscv03400
]
125978555 (ercc6)
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
125978555 (ercc6)
DNA repair and recombination proteins [BR:
sscv03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
125978555 (ercc6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
DosC_2nd
CNOT11
Motif
Other DBs
NCBI-GeneID:
125978555
NCBI-ProteinID:
XP_049591943
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All DBs
Position
12:7645982..7658133
Genome browser
AA seq
1385 aa
AA seq
DB search
MPVDGPEDQAPSSHSGGPASAALTRTNSEENGGSAVFSQGPEAASPCTVVNEAEESNSGC
KRSGALLHIDRQRIQAASASSGADELLGLGVAVYDQDVLEQGVLQQVDEAIQEASQAAAK
AEAAKEYESVLDDVRSTVVSLKHINKIIEQLSPYASSSKDISRKIESVKRQKENKEKQLK
KVRAKQKRLQAILGGEIAQRFEDELLAEDAEDTEPGPSTLGSMLMPVQETEWEELIRTGH
MTPFGTRIPQKEVKKEPRKLMLAENSAFDEYLADQAKLATERKRAPHVKKRRSTATHQQG
SKGSASSPKDKKMRKRMRKLQITALKAHPKARQKSEPQAPKLKRKRQTEGDEVDSDGSEY
LPSDEGFDPEQEQRDAMEEGFGEGGDEGDYELKAYKRKNEAKGRRPMKKQLSDDQYSPES
SDEENEAKSKEKKCKDDGDVECYRQRIRRWKRQRLREREERRERGEEVTDDSDAEFDEGF
KVPGFLWKKLYKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIICFLAGLSYSKLRTR
GSNYRYAGLGPTVIVCPATVMHQWVKEFHTWWPPFRVAVLHETGSFSSNKEKLIPEIASC
HGILITSYSAVRSLQDILQRYDWHYVILDEGHKIRNPNAGITTACKQFRTPHRFILSGSP
MQNNLKELWSLFDFVFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVQTAFKCACVLRDT
INPYLLRRMKADVKDNLALPDKNEQVLFCRLTQEQRQVYQSFLDSKEVYQILNGDMQVFS
GLIALRKLCNHPDLFSGGPRLLRGIPEEALTEEEHFGYWKRSGKLIVVDSLLRLWFKQGH
RVLLFSQSRQMLDILEVFVTQNHYMYLKMDGTTTIASRQPLIARFNEDKSIFVFLLTTRV
GGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKQQVTVYRLLTAGTIEEKIYHRQ
IFKQFLTNRVLKDPKQRRFFKSNDIYELFTLADPDEKQSTETSAIFAGTGSDVKAPKKTE
RMHHSKHSKSQQIEINPNNRHSLLESSESACQRLSQGPINGTVGAQNKPNGMDADPHLSC
GKLKNGTGLKRREKRKHCDSSKMERHKGKKHKREKDARFEGQRISHLVKKREYKRTDAED
QKKSDDYVLSKLFKKSGIHSVMQHDAIIESSNPDYVLVEAEADKVAKDALKALKVSRQHC
RLALSRNPPPPARKRFGQKKNSLLVGPSVPTLPNLNKCKDAAIVTKTNLKKPDAGAHFSG
EVAEIDSSATPLSSSALLARMRDRNHLSLPSSRQREEDDAEEDGAGTSRPAPSTEHDELL
TDLRNFVAFQGQVDGQASTQEVLEYFKPRLSVKQAPVFRELLRSICDFQRRSGQEGLWRL
KENFR
NT seq
4158 nt
NT seq
+upstream
nt +downstream
nt
atgccagtagatgggccagaggaccaggccccctcctcccactctggtggtccagccagt
gctgctctcaccaggacaaactcggaggagaatggaggctcagcagttttttctcaaggc
cctgaggctgcgtctccctgcacagttgtcaacgaagctgaggagagcaatagtggctgt
aagaggtccggagctttgctgcatatcgaccgccagcgcatccaagcagcgtctgccagc
tctggggctgacgagctgctcggcctcggcgtggccgtctatgaccaggatgttctggag
caaggcgtcctgcagcaggtggacgaggccatccaggaggccagtcaagctgctgcaaaa
gcagaggctgcgaaggagtatgagtcggtgctggatgatgtcaggtctacagtggtatcg
ctgaagcacatcaataagatcattgagcagctatccccttatgcttcatcaagtaaagac
atcagtaggaagattgaatcggtcaaaaggcagaaagaaaataaggagaaacaactcaag
aaggtccgagccaaacagaagcggcttcaagctattttgggaggagaaattgcccaaagg
tttgaagatgagcttttggcagaagatgcagaggacacagagcctggtccttccacactg
ggcagcatgctcatgccagtacaggagaccgagtgggaagagctcatccggacaggtcac
atgacaccttttggtacgagaatcccacagaaggaggtgaagaaggagccacgcaaactc
atgctggccgagaactcggcctttgatgagtacctggccgaccaggccaagctggcgact
gaaaggaagagggctcctcatgtgaagaagaggaggagtactgctacacaccagcaagga
tccaaaggaagcgcttcctctccaaaggacaagaaaatgcgtaagcgcatgcgaaagctc
cagataactgctttgaaagctcatcccaaggcaagacagaaatcggagccacaagcgcca
aagctaaagagaaaacgtcaaactgaaggcgacgaggttgacagtgacggctccgagtac
ctgccgagcgacgaaggcttcgaccccgaacaagaacaacgagacgccatggaggaaggc
tttggggaaggcggcgatgagggcgactacgagttgaaagcttacaagaggaaaaatgaa
gccaagggaaggaggccgatgaagaaacagcttagcgatgaccagtattcccctgaaagt
tccgatgaagagaatgaggccaaaagtaaagagaagaaatgcaaagatgatggcgatgtg
gaatgttatcgacagcggataaggaggtggaagcgacagcgtcttcgagaacgggaggag
aggcgggaaagaggtgaggaggtgacagatgacagcgatgcagagtttgatgaaggcttc
aaagttcctgggttcctgtggaagaaactttacaagtaccagcagacgggggtgcgctgg
ttgtgggagctccactgtcagcaggcaggaggcatcctgggagacgagatgggtttgggt
aaaaccatccagatcatctgcttcctagctggactcagctacagcaaactgaggacccga
ggctccaactacaggtatgctggactgggccccaccgttatcgtgtgtcccgctaccgtc
atgcaccagtgggtcaaggagttccacacctggtggccaccttttagagtcgctgtcctt
catgaaacgggatctttcagcagcaacaaggaaaagctgattccagagatagcatcatgt
cacggcatcctgatcacctcatactcagcagtgaggagcttgcaggacatcctgcaacgc
tacgactggcactacgtcatcctggatgagggccacaagatcagaaatccaaatgctgga
atcaccacagcctgcaaacagttccgcaccccccacagattcatcctgtccggctcgccc
atgcagaacaatttaaaggagctctggtctctctttgattttgtctttcctgggaaactg
ggcactttacccgtcttcatggagcagttctctgtgcccatcaccatgggaggatacagc
aatgcctcacctgtccaggtccagacggcgttcaagtgtgcatgcgtgctgagagacacc
atcaatccttacctccttcgaagaatgaaggctgacgtcaaggacaaccttgccttacct
gacaaaaacgagcaggttttattttgcaggttaacgcaggagcagcgtcaggtttatcag
agcttcttagactccaaagaggtctaccagatactcaacggggacatgcaggttttctca
ggcttgatagcactgcgtaagctgtgcaaccacccggaccttttctctggcggcccgcga
ttgctgagggggatccctgaggaggcgctaacagaagaggagcacttcggctattggaag
cgctcgggcaaactgatcgtggtggactctctgctgcgtttgtggttcaagcagggtcat
agagtcctgctcttctcgcagtcgcgacagatgttggacatcttggaagtgtttgtgaca
cagaaccactacatgtacctgaaaatggacggcacgaccaccatagcttccagacagccg
cttatcgcccgcttcaacgaggacaaatctatatttgtcttcttgttgacaactagagtg
ggaggtctgggagtcaatttgactggagccaatagagtcatcatctatgacccagactgg
aacccgagtactgacacgcaggcgagggagcgggcctggagaatcggtcaaaagcagcag
gtaaccgtctacaggctccttactgcaggcaccattgaagaaaaaatataccacagacaa
attttcaaacagtttctgaccaaccgtgtcctgaaggaccccaaacaacgccgtttcttc
aagtctaatgacatctatgaacttttcacattagctgacccagatgaaaagcagagcaca
gagaccagtgcaatatttgccggtaccggctccgatgtcaaggcacctaaaaaaacggaa
agaatgcaccatagtaaacactccaaatcccagcagattgaaataaatccaaataataga
cattccttattagagagttctgaatctgcctgtcagagattatctcagggtccaataaat
ggtacagtgggtgctcaaaacaagccaaatggcatggatgcagatccgcatttatcatgt
ggcaaactaaagaacggcacgggtctgaagcgcagggagaagaggaaacactgcgactcc
agcaaaatggaaaggcataaaggaaagaagcataaacgtgaaaaagacgctcgcttcgag
ggccagcgcatctcgcacttggtgaagaagagagagtacaagaggacggacgctgaagac
cagaaaaaatctgacgattacgtcttgtcgaagctcttcaaaaaatccggaatccacagc
gtgatgcagcacgacgccatcatcgagtcctcaaatccagactacgtgctggtggaggct
gaagccgacaaggtggccaaagatgccctgaaggccctcaaagtgtctcgccagcattgt
aggctggccctcagtcgaaaccccccgccgcccgctcggaaacgcttcggacaaaagaag
aattctctcctggtcggaccatctgtgcccacgctccccaatttgaacaaatgcaaggat
gctgctatcgtaacaaagacaaacttaaagaagccagatgcaggggctcatttcagcggg
gaggtagccgaaattgactctagcgcaacccctctgtcctcgtccgccctcctggcccgc
atgagagaccgcaaccacctcagccttccctccagcagacaaagagaagaagatgatgct
gaagaggacggtgccggcacctcacggcccgctccgagcacagagcacgacgagctgctg
acggacctgcgcaactttgtggccttccaggggcaagtggacgggcaggccagtacacag
gaagtgctggagtacttcaaacccagactgagcgtcaagcaggcgcccgtcttccgagaa
ttgctcaggagcatctgcgacttccagcggaggtctgggcaagagggcctgtggaggctc
aaggagaactttcgctga
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integrated database retrieval system
