Syngnathus scovelli (Gulf pipefish): 125978558
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Entry
125978558 CDS
T08785
Symbol
cdhr1a
Name
(RefSeq) cadherin-related family member 1a isoform X1
KO
K16501
cadherin-related family member 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sscv04515
]
125978558 (cdhr1a)
Cell adhesion molecules [BR:
sscv04515
]
Cadherins
Cadherin related
125978558 (cdhr1a)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_CELSR2_9th
RibLong
Cadherin_2
Motif
Other DBs
NCBI-GeneID:
125978558
NCBI-ProteinID:
XP_049591950
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All DBs
Position
12:3129000..3137299
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AA seq
864 aa
AA seq
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MKHVKILHLPLLFTFWHVCLAQADFAPYFFDNGPYSNNGNMALFSLSEDTPVGTQIYCLN
GTDPEGQEVSYGLSFDPGSKEYFRVNPKTGNITLVQRLDREKQDSFDVMVSITDGKSKVV
ERVTIFVMDANDEKPEFQNMPAIIDVLETTESGHSIFKAQAVDKDTGSGGSVNYYLLNAQ
SSLFTIDRHSGVIRIKPEETLDYEKTKTHFLVVTAKDGGGTFNGKEQFLSSSATLTINVI
DAQDTPPSFIGTPYFGYVYEVSLPGSEIFTVVAKDGDVGNPNPIRYSFVEGDDGVFSINE
TTGRITLLTSPVFLKREIFNIRVKASEISPRGRLLDYSETTMVIRVVDLNNNPPTFYGEN
GTQSTFELTMYEHPPEGEILRGLKITVNDSDQGANAKFNLRLIGPGRMLRVVPQTVLNEA
QVTILVEDSAGMDYEKHHFLTYKLLAVEIDTPERFSSTADIIIHLMDTNDNAPKFSSDYY
IARIPENSPGGSNVVSVLAIDPDSGPWGDVKYSIYGSGADLFLVQPSSGIIYTQPWANLD
AEVRSKYNFYVKAEDSEGKYSLAEVFVTVLDLNDHPPAFNDNFLEKTMVIGAPVKIEAID
DDAEIPNNVIEYAIMKAEPDNNIFDIDSDTGEINLKSYIKSMAIIQNITKQRDLTWSLVV
QARDMGQPSFSTTAVVKIDITEANKLKGGTLESFFMHDKNKPVQIVGVLAGVISLMVMLT
VVISTVTFVRNKKSNRVVPNRRVRRRPRNQHAWTFKNLFRKAENPEEKFQVEDEEPDVAE
NVNRNNNVDNTVRHWPPPPPPRAPSLPPPPPPYVPGERKWVVPTVSAIVAARPKKKSTGQ
DTVNKALVSELKMRLEQKRMLNHL
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atgaagcatgtgaagattttacatttgccactgctctttactttttggcacgtttgcttg
gctcaagcagacttcgccccgtatttcttcgacaatggaccgtacagcaataacggcaac
atggcgttgttcagcctctcagaggacacgcctgttggtacacaaatttactgccttaac
ggcacagaccccgagggccaggaggtgagctacggcctgtcttttgatccaggttccaaa
gagtacttcagagtcaatccaaaaacgggaaatattacattagtgcaaaggctggatcga
gagaaacaagattcatttgatgtcatggtcagcatcacagatgggaaaagcaaggtggtg
gaaagagtgacaatatttgtgatggatgcaaacgatgaaaaacctgaattccaaaacatg
cctgccatcattgatgtccttgaaacgaccgagtcaggacacagcatcttcaaagctcaa
gcggtggacaaagacacaggttctgggggatccgtcaactactaccttctgaatgcgcag
tccagtttgtttaccattgatagacatagtggagtcattcgtatcaagcctgaggaaacg
ctggactacgagaaaaccaaaacgcattttctcgtggtcactgcaaaggatggtggaggc
actttcaacggcaaagagcagtttttgtcatcctcagctaccttaacgattaacgtgata
gacgcacaggatacgccgccatcttttatcggaacgccgtactttggatacgtttatgaa
gtgtcactgccggggtctgaaattttcaccgttgtggccaaagatggcgacgtggggaac
ccaaatccaattcgttattcttttgtagaaggtgatgatggagtttttagtatcaatgaa
accacgggtcgtatcaccctgctgacaagtcccgtgtttctaaagcgagaaatctttaac
ataagagttaaagcatcggaaataagtcccagaggccgtctcctggactacagcgagacc
acgatggtgatccgcgtggttgacctgaacaacaacccgccgactttctacggcgaaaac
ggcacccagagcacttttgagctgaccatgtacgagcatcccccagaaggggaaatacta
cggggtcttaaaatcacagtcaacgactctgatcagggcgccaatgcaaaattcaacctg
aggcttattggtcctggaagaatgctacgtgtggtcccacagacggtactgaacgaggcc
caagtcacaattctggtggaggactcggcaggcatggattatgagaagcatcatttcctc
acgtataagctacttgctgtcgagatcgatacacccgagaggttcagctccacggccgac
atcatcatccatctgatggacaccaatgacaatgcgcctaaattctcctcggactactac
atcgccaggattccagagaattcacccggcggctctaatgtcgtgtccgtcctggccata
gaccctgactcaggaccatggggtgatgtgaagtactctatctatggatctggggcagac
ttgttcttggtccagccttccagtgggatcatctacacacagccctgggccaatttggat
gcagaagtgcgctccaaatacaacttttacgtcaaggcagaggactctgagggcaagtac
agcctggctgaggtgttcgtcactgtactggatctgaacgaccacccgcctgctttcaat
gacaacttcctggaaaagacgatggtgatcggagcaccagtcaaaatagaggccatagat
gatgacgcagagattcccaacaacgtaatcgagtacgccatcatgaaagctgaaccagac
aacaacatcttcgacattgactccgacactggcgagatcaatctcaagtcatacatcaag
tccatggcaatcatccagaacatcaccaagcagagggacttaacctggtcgttggtggtg
caggcccgggacatgggccaaccatctttcagcaccaccgccgtggtcaagatcgacatc
acagaagcaaacaaactcaaaggtggcactttggaatcgttttttatgcacgataaaaac
aagcccgttcaaatcgtaggcgtgctcgcgggcgtcattagtttaatggtcatgctcacc
gtcgtcatctccaccgtcaccttcgtacgcaacaaaaagtccaaccgggtcgtgcccaac
cgccgcgtgaggagacggccccgcaaccagcacgcgtggacctttaagaacctcttcagg
aaagccgagaacccagaagagaagttccaggtcgaggacgaggaaccagatgtggcggag
aatgtcaaccggaacaacaacgtggacaatacggtcaggcattggccgccgccgccaccg
cctcgagccccttcacttccaccgccgccaccgccctacgtacccggggagaggaagtgg
gtggtgcccaccgtctcggccattgtggcggcacggccaaagaagaagtcaacagggcaa
gacacggtcaataaggcgctggtgtcagaactcaaaatgagattagagcagaaaaggatg
ctcaatcacttatag
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