Syngnathus scovelli (Gulf pipefish): 125978559
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Entry
125978559 CDS
T08785
Symbol
lrit1a
Name
(RefSeq) leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1a
KO
K24491
leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
sscv04990
]
125978559 (lrit1a)
Domain-containing proteins not elsewhere classified [BR:
sscv04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
125978559 (lrit1a)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LRR_8
I-set
LRR_4
Ig_3
ig
LRR_1
fn3
Ig_2
LRR_14
LRR_EndoS
RNA_pol_Rpb1_2
DUF6161
Motif
Other DBs
NCBI-GeneID:
125978559
NCBI-ProteinID:
XP_049591952
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All DBs
Position
12:complement(3141178..3145715)
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AA seq
647 aa
AA seq
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MFLVLVLGLYVAAGGLFSPVSGCPSQCSCFYHNLSDGSKARSVICNDPEISLVPVGFPVD
TSKLRIEKTAIQRIPSEAFNYLSGLEFLWMSFNALSVLGADSFRGLFNLEELRLDGNALA
AFPWESLTDMPSLRLLDLHNNQLTSLPVEATTHIRNLTYLDLSSNSLLTLPISVLANWLA
AKPVQGPESSKMILGLHDNPWACDCRLYDLVQFQKSPTQAVAFIDTRLRCSSPESVSGVL
FSDAELRRCQAPQIHTAVARVRSAVGNNVLLRCGTIGVPIPDLTWRRADKRVLNGTVLQE
TSKDGITWSILSVPAVSYRDSGKYICKATNYAGNAEAVISLVVSNSPKQEGNQTGNEKKA
KVKKSNPVGKAAYQEKLVARYVVPTSIPTSPPPVLDPVLPLEIADPSLDNPGLSPDPSAS
SNSDTLLDLEKTNLSNLAANTSSLQQDPDRVVRSVKVVGDTDNKISLNWRAPKAKNTTAF
SVLYAVFGERDMRKINVGAGQNRVTIEGLVPRTKYIACVCVRGLIPKKEQCVIFSTDEAA
SATGTQKLINVIVITVACIIAVPLTVIVCCGALKRRIQKYWGKKSKDIQDSYVTFETLSP
GTKAKGLEGEYLNRLNPEESNRLLSARSSLDSEATAKIEGQPNEYFC
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atgttcctcgtcctggtgctggggctctacgtggccgcgggtggacttttctccccggtg
agcggctgcccgtcccagtgcagctgtttttaccacaacctgagtgacggctccaaggcc
aggagtgtgatttgcaatgaccccgagatctcgctggtgcctgtcgggttcccggtggac
acgtccaagcttcgcatcgaaaagacagccatccagcggataccgagcgaagccttcaac
tacctctcgggtttggagttcttgtggatgtccttcaacgcgttgtccgtgctgggcgcc
gacagcttccgcggactcttcaacctggaggagctgcgcctggacggcaacgcgctggcc
gccttcccttgggagtcgctcactgacatgcccagtctgagacttctggacttgcacaac
aaccagctcacctcgcttccggtggaggccaccacacacatcaggaacctcacctacctg
gacttatccagcaacagtttgctgacgctgcccatctccgtgctggccaactggcttgcg
gccaaacctgtccaagggcccgagagctccaaaatgatcctgggtctccatgacaaccct
tgggcgtgcgactgtcgcttgtacgacctggtccagttccagaagtctcccactcaggct
gtggcattcatcgacaccaggttgcgttgctcttcccctgagagtgtgtcgggcgtcctt
ttcagcgatgccgagctgcgacgttgtcaggccccgcaaatccacacggccgtggcgcgg
gtccgaagcgccgttggaaataatgtcctgctccggtgtgggaccatcggggtgcccatt
cctgacctgacgtggcggagggcggataagcgagttctgaatggaacggtcctacaggaa
acatccaaagatggcatcacctggtccatcctcagcgttccagccgtgtcctatcgcgat
tccgggaaatacatatgcaaagcgacaaactacgccgggaacgctgaagctgtcatttct
ttagtggtatccaattctccaaaacaggaaggcaatcaaaccggcaatgagaagaaggcc
aaagtgaaaaaatccaacccggttggaaaagcagcttaccaggagaaactggtagcccga
tacgtggtgccaacctccatccctacgtctccaccgccggtcttggatcctgtccttcca
cttgaaattgctgaccccagtttggacaatcccggtctttcccccgacccgtctgcatcc
tccaactcagacacactgttggatctggaaaagaccaacctcagcaacctggctgcaaac
acctcatctctgcagcaagacccagaccgggtggtccgctcagtgaaggtagtaggggac
acggacaataaaatctccctcaactggcgagctcccaaggccaagaacacgacggccttt
agcgttctatatgccgtgttcggggagagagacatgaggaagatcaacgtgggggcgggc
cagaatagggtgaccatcgaaggcctcgtgcccagaaccaagtacatcgcctgcgtatgc
gtgagggggctcatacccaagaaggaacaatgtgtcatcttctccacggacgaggcagcc
agcgcgactggcacccagaagctgatcaacgtgatcgtgatcaccgtggcttgcatcatc
gccgtacccctcaccgtcatcgtgtgttgcggcgccctgaagagacgcatccagaaatac
tggggtaaaaaatccaaggacatccaagattcctatgtgacctttgagacattgtcaccc
ggcaccaaagccaaagggctagaaggggaatacttgaacagacttaacccggaagagtcc
aatagattgctgtcggcccgctccagcctagactcggaggccacggctaaaatcgaagga
cagcctaacgagtacttctgctga
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