Syngnathus scovelli (Gulf pipefish): 125978571
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Entry
125978571 CDS
T08785
Symbol
piezo1
Name
(RefSeq) piezo-type mechanosensitive ion channel component 1 isoform X1
KO
K22128
piezo-type mechanosensitive ion channel component 1/2
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125978571 (piezo1)
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sscv04040
]
125978571 (piezo1)
Membrane trafficking [BR:
sscv04131
]
Endoplasmic reticulum (ER) - Golgi transport
Others
Others
125978571 (piezo1)
Ion channels [BR:
sscv04040
]
Other channels
Mechanosensitive channel (Piezo)
125978571 (piezo1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Piezo_TM1-24
Piezo_TM25-28
Piezo_THU9_anchor
Piezo_cap
THU_Piezo1
DNA_pol_phi
FAM210A-B_dom
FAM176
Motif
Other DBs
NCBI-GeneID:
125978571
NCBI-ProteinID:
XP_049591961
LinkDB
All DBs
Position
12:complement(47492..67448)
Genome browser
AA seq
2542 aa
AA seq
DB search
MSGIFTLGLTETICVPYTWLSRYLATQACLLRYNVLSLVYFVYLLLLPWFLCPNKHTIRG
HTGHFIRAIFCTSLLFLLAHVCFQTVLYTYPPLNIAIGDNCSHMATISRHIGLSRLPLED
PWTVLRLLCPDLVLCAISLLTIILCRRLVMTRDILAAANITTMQEEEEEEEEEEEEEEET
NDEAESEQESEDEDDEGSFPCDAARDLSTATLAKQLAERLKAVVHKVLLDLWRIFAVSLL
ALAGIAMPSAFSAVYFLLFLAVCTWWACHLPMSPLAFNTLYVMVGFFTAGHILCLYLYQC
LLAQVLFPPRSLWARLFGLKDIIKPGNCSTPYDFSLNTEYDWPVYVNPGILFLLYVISAM
VLKTGGHGSLNQEEDGQEQVKNANEPKDETLELSAWNQKRGDDDCEDDAQRMLLCVGTEQ
SQGGSVAEEGPAQNGFAVGQLSESPLSMLAKTIMQQSYVCALIAMMVWSITYHSWLTFVL
LLWACLIWILRARRRAAVLCSPFIMLYALALCCLQYVWAMELAPELPTTVGSMSLRQLGL
DKAQYPCLRLGAMLLFTSTFWLLVRQSVKEKFCKSRKTATPLEEVTSTGMESTNQSLPKV
LGGLVLSFYAKYWIYVCAGMFLMVSFVGKLVGYKLVYMLLFLLCLCIYQLYYSVWRRLLK
LFWWLVVAYTMLVLISIYTFQFEDFPGYWKNLTGLTEQQLTAVGLETFALSELFTSIMIP
GFFLLACILQLHYFHKPFMRITDPEHVTPIHRKSSCEQTPLAATVDESDDKVDFMPSKWT
LVVDRLLVLLDKFSDILNKAQVFLWTLLDLHITKMVALYTVWVALEEPSVFNLVLVTLWS
LAMPFSGFRPMASSLSTVWVCVIIMCKMLYQLSVVSPTQYSNNCSLPLVNETNLLQREIL
NSSLYKAPVDPADWFGIRKEASVLAYSKKHLAVLLLLVFEATVYRHQAHYYRQLRRAPSK
VPALFPDATRATLDQGLLACFKYLLNYAFYKFGLEICFLMTVNVIGQRMNLLVIIHGCWL
VAILVRRRRAAIARIWPKYCVFLAIFTIYQYVLCVGIPPALCKDYPWRWNTPLLMNSALI
KWLYLPDFYTAPNSKNLIVDFMLLICASQQWKVFKCEQCEEWVRLAGDNTDDPEPMKGGQ
LNPAPNFVNCRSYLDMAKVLVFRHLFWFVLSVVFMTGATRVSVFGLGYLLACFFFLLFGT
QLLVQASRTRLAMWDCLIIYNVTVIISKNILSILACVFVIEMQKGFCWMIQLFSLVCTVQ
GYYDPNVVSDKKCSLPIEEAGIIWDSICFLFLLLQRRVFLSFYFFHVVAELEAFGKQASR
GFELFKATIMKNIKSHQQAEMKSLSQLKRSMQRIRSKQQRYRDGRKVSEEDNQSPSAETK
TERKNGSWSQSWLDHATVLHSGWYYLFESDSEGECEVLSEEPKPPKQTAYQLAYQAWVNN
VKRALKEHQRKRRSQRRREPVQDGSATPHTWPEESCSVTGSEDNDVFEDPQIKEPAEESG
RGEIVQRILDIVRFLWAIVLAIMDGLTQWLNLLTKQYRETSAVLCNERYFFIHKIEQPPR
TAAGSTGDHSRGAESPTLYYGTPTESNQYSLLEETPIAEDSSPPRPRLDSTAKLSSPELP
VVSHLTAESPFVQQRRHSRTASEVLGDRDFLIQELEESTVFYNRQNRTLKLLFATHNVLA
ANSELVCYLIIILNHVVSASVISLVLPISVFLWAMLTVPKPSKTFWMTAIIYTEVMVVIK
YLFQFGFFPWNSDYEMTLNEDKPFFLPRILGVEKTDTYIRYDLLQLLALFFHRSLLMRYG
LWDHKDPLVEESSNSSGHGKEGKGKDKDDTLNSASSTEKLNLEQRGKLFPADSAASLDTQ
EHVCGWNHATSVKKEQMSGSNKEVFEEMTRKKSGLHLRKKPRELRAKAATESAAPPGKEL
RTRKKKGKRKEAAGNRIRAVGRKLKQAFLSGIRGLYRPVGAFFLDTLRADYRVGADVYAL
MFLTDVIDFIIIVFGFWAFGKHSAAADIASSLSEDQVPEAFLVMLLIQFTTMIIDRALYL
RKAVLGKLIFQVVLVLGIHLWMFFILPAVTEGRFNRNFVAQLWYFVKCIYFALSAYQIRC
GYPTRILGNFLTKNYSHLNLFLFQGFRLVPFLVELRAVMDWVWTDTTLSLSDWMCVEDIY
ANIFIIKCSRETEKKYPQPKGQKKKKMVKYGMGGLIIIFLVCIIWFPLLFISLVRSVVGV
VNHPIDVTVTVKLGGYEPLFTMSVQQQSIKPLTEVEYENLTKKFGNNAVAMQFISLYGYE
DVVTATIEGSSGSVWRISPPSRQEVIKELLGSPADLTLRLAWNFQRDLGKGGTVEHTFDK
HSIDLEPGNPVRADLASLLLGNRTKPVHVPNMFPNYIRAPNGAEAKPASQLYEGNEEGYQ
NVTLSLKSDNSLDSSGKQEWWDIAIGGCAPSACGLLSMIIFNDKVSPPSLGFLAGYGIMG
LYVSVVLVIGKFVRGFFSEISHSIMFEELPCVDRILKLCVDIFLVRETGELELEEELYSK
LIFLYRSPETMIKWTRDVRGRD
NT seq
7629 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggtatttttaccttgggattgacagaaaccatatgtgtgccctacacctggctt
tcaagatatttagcaacgcaagcttgtcttcttcgctacaatgtactctccctggtctac
tttgtttacctgttgttgctgccctggtttctgtgtcccaacaaacacaccatcagagga
cataccggccatttcatcagagccatattttgtaccagtctgctgtttctactcgctcat
gtctgcttccagaccgtcctatacacctatcctcctctcaacattgctattggtgacaac
tgttcgcacatggctaccataagcagacatatcggactgtccaggcttccactggaggat
ccttggactgtgttgcgcctactgtgtcccgacctggtgctgtgtgctatttctttgtta
accatcatcctttgtagaagattagtcatgacccgagacatactggctgcagcaaatatt
accactatgcaagaagaagaggaagaggaagaagaagaagaagaagaagaagaagaaaca
aacgacgaggctgaaagtgagcaagaatcagaggacgaggatgacgaaggatcatttcct
tgcgacgccgctcgggatctttcgacggcaaccttggccaagcagctggctgagcgtctg
aaggccgtggtccataaagtactgctggacctttggagaatctttgccgtcagcctactt
gctttggccggaatcgcaatgccttcggctttctcagccgtttacttcctgcttttcctg
gctgtctgcacgtggtgggcatgtcaccttccaatgagtcccctggctttcaacacgctc
tatgtgatggtgggcttcttcaccgctggccacattctttgtctctacctataccagtgt
cttctggcccaggttctctttccaccacgcagtctttgggcaaggctctttggtctgaag
gacattatcaaacctggaaactgctcgacaccgtacgacttcagtctcaacacggaatat
gactggccggtgtatgttaacccgggaatactgttccttctctacgtcatctcagcaatg
gttctgaagacaggaggccatggatcactgaaccaggaggaagacgggcaagagcaggtg
aaaaatgcaaatgagccaaaggacgagacgctggagttgagcgcgtggaatcaaaagagg
ggggatgacgactgtgaagatgacgcacagcgcatgctcttgtgtgtgggaacagagcag
agtcaagggggaagtgtggcagaggaaggtccagcacaaaatggttttgctgtcggccag
ctgtccgaaagccccctttcgatgctggccaagacaatcatgcaacagagttacgtttgc
gctctgatagcgatgatggtctggagcatcacgtaccacagctggctgacatttgtgctg
ctcctgtgggcttgtctcatctggattctgcgtgctagacgacgtgcagccgtgctttgc
tctccgttcatcatgctctacgcgctggcactgtgttgtctgcaatacgtttgggccatg
gagcttgcgccggaactgccgaccaccgtgggaagcatgagtctcaggcagctagggttg
gataaagcccagtacccctgtctcagactgggagctatgctcctgttcacgtcaacgttc
tggcttttagtacgtcagtcggtgaaggaaaaattctgcaagagtaggaaaacagccaca
ccactagaagaagtcacttcaacagggatggagtccacaaaccaatccctgccaaaggtc
ctgggaggcttggtactaagtttctatgccaagtattggatctatgtgtgtgctgggatg
ttcctcatggtctcttttgtgggaaaacttgttggctacaagctggtctacatgctgctt
ttcctcctctgcctctgtatatatcagctctactactctgtctggaggcgtctattgaag
ctcttctggtggctggtcgtggcctacaccatgttggtattgatctctatctacacgttc
cagtttgaagacttccctggttattggaagaatttgaccggactcaccgaacaacagctc
acagccgtcggtctggagacctttgccctctccgagctcttcaccagtattatgatcccc
ggattcttcttgctggcctgtattctgcagttgcactatttccacaagcccttcatgaga
attactgaccccgaacacgtgacaccgattcaccggaaaagcagctgcgagcagaccccg
ttagccgctactgtcgacgaatcggacgataaagtggacttcatgcccagtaaatggact
ctggtggttgacaggctactggtcctgttggacaagttctcggacattctcaacaaagct
caggtctttctctggactcttctggaccttcacatcactaagatggtggcactctacact
gtgtgggttgcacttgaagagccatctgtgtttaacctggtcctggtgacgctgtggtct
ttggccatgccattcagtggcttccgacccatggcttccagcctgtccaccgtctgggtg
tgcgtcatcatcatgtgtaaaatgttgtaccagcttagcgtcgtcagcccgacccagtac
tccaacaactgcagcctgccgcttgtgaacgagaccaaccttttacaaagggaaatcctg
aattcgtccttgtacaaggcaccggtggacccggccgactggtttggcatcaggaaggaa
gcgagtgtactggcctatagcaagaagcatttagccgtgctgctgttgctggtgtttgag
gccacagtgtatcgccaccaggcccactactatcgtcagctgcgacgagccccctccaaa
gtacctgctctgttcccagacgccacgagggctactttagaccaaggccttctagcctgc
ttcaagtacctgctcaactacgccttctacaagtttggattagagatctgcttcctgatg
actgtgaacgtgatcggccaacggatgaacctcttggttataatccacggttgttggttg
gtggccatcttggtgagacgacgtcgggcggccattgcgaggatatggcccaaatattgt
gtctttctggccatcttcaccatttatcaatatgttctatgtgtgggtataccaccggct
ctgtgtaaagattacccatggaggtggaacaccccgcttctgatgaactctgctcttatc
aaatggctttatctgccagacttctacactgcgcccaactctaaaaacctcatagtggat
tttatgcttctgatttgcgcatcccagcagtggaaagtatttaaatgcgagcagtgtgag
gagtgggtgcgtctggctggagacaatacagacgaccctgaaccaatgaaaggtggacag
cttaatcctgcgcctaactttgtcaactgcaggagttacctggacatggctaaggttttg
gttttccgccacttattctggtttgtattgtcagtggttttcatgaccggagcgactcgg
gtctctgtgtttggattgggataccttctcgcttgttttttttttttgctctttgggacc
caactcttagtccaagcctccaggacgcgccttgccatgtgggactgtctcatcatctat
aatgtgacagtcatcatatccaaaaatattttatcaattctggcatgcgtgtttgttatt
gagatgcaaaaaggcttttgttggatgatccagctcttcagtttagtctgcacagtccag
ggatactacgatccaaacgtagttagcgataagaagtgcagcctccctatcgaggaagct
ggaatcatctgggacagcatttgttttctcttcctgctgctgcagagacgggtcttcctc
agtttctatttcttccacgttgtagcggaactggaggcatttggcaagcaagcctcaagg
ggctttgagctcttcaaagccactatcatgaagaacatcaaatcacaccaacaggccgag
atgaaatccttatcgcagctcaagagatcaatgcaaagaattcgctcgaaacagcagagg
tacagagatggacgtaaagttagtgaagaagacaaccagagtccgagtgctgaaacgaag
acggagagaaagaacggaagctggtctcaatcgtggctcgaccacgcaacagtgctgcat
tcagggtggtactacctttttgaatcggacagcgagggggaatgtgaagtgctgtcagag
gagccgaagcctccgaaacagaccgcctatcagttggcttatcaggcgtgggtgaacaat
gtgaaaagagctctcaaagaacatcagcgaaagcgaaggtcgcagagaagacgtgaaccg
gtccaggacgggagtgccacaccgcacacttggccagaggaatcttgctccgtgacaggc
tccgaggacaatgacgtgtttgaagatccccaaataaaggagccggcggaggagtctggt
cgcggagagattgttcagaggatcttggatatcgtacgtttcttatgggccatagtactg
gcgatcatggatggattgacccagtggctcaacctgctgactaagcagtatagggaaaca
tcggccgttctgtgcaacgaacgctacttcttcatacacaagatagaacaacctcctcgc
acagcagcaggctccacgggtgaccattctcgaggcgccgagagcccaacgctatactac
gggacaccgactgagagcaatcaatacagccttttggaggagacaccgattgcggaggac
tcgtctcctcccagacccagactcgacagcacggcaaagctctcgagtccagaactcccg
gttgtaagccacctgacagcagagagcccattcgtacaacagcgcagacactccagaaca
gccagcgaagtgctcggagacagggacttcttgatccaagagctggaagaaagcacggtg
ttctacaacaggcaaaaccgcacactgaagctcttgtttgccacacacaatgtgttggcg
gccaactcggagctggtttgttatttgatcatcatcttgaatcacgtggtcagcgcctct
gtgatatcgctggtattgcccataagcgtctttctgtgggctatgctgactgtgcccaaa
cccagcaaaacattttggatgacagccattatctacacagaggtgatggtggtgatcaaa
tacctttttcagtttggattttttccctggaacagtgattacgagatgactttaaacgaa
gacaagcctttctttctaccgcgcatcctcggcgtggagaaaacggacacttacataaga
tacgacctcctccagctgctggctctcttcttccatagatctttgctcatgcggtatggc
ttgtgggaccacaaagaccccttggtggaagaaagtagtaactcatcaggtcatggcaag
gaaggaaaaggcaaagacaaagatgacacgctaaactcggcgtcgagcacagaaaagctc
aacctggaacaacgtggaaagctctttccagctgactcagcagcatccctggacacacag
gaacacgtgtgcgggtggaatcatgccacaagcgtgaaaaaggaacaaatgagcgggagc
aacaaagaggtctttgaggaaatgacgcggaaaaagagcgggctccacttacgcaagaaa
cccagagagcttcgagcgaaggccgccactgaaagcgcagctccccccggcaaagagctt
aggacgagaaagaagaaaggcaaaaggaaagaagcagccggcaatcggatacgggctgtc
ggacgcaagctcaaacaagccttcctctccgggattcggggactttaccgacccgtcggg
gctttcttcctggatactctccgagccgactatcgtgtcggcgctgacgtctacgcgctc
atgttcttgaccgatgtcatcgacttcatcatcattgtctttggattttgggctttcggg
aaacacagcgcagcagctgatattgcctccagcttgtcagaggaccaagttcctgaagcc
tttctggtgatgctcctcatccagttcaccaccatgatcatcgacagagctttgtacctg
cggaaggccgtcctggggaagctcattttccaggttgttctcgtcttggggatacacctg
tggatgttctttatcctccctgctgtcactgaagggagattcaatcggaactttgtggcc
cagctgtggtactttgtcaagtgtatttactttgccctgtcagcgtaccagatccgttgc
ggctacccgactcgtattcttggcaacttcctgactaaaaactacagccatctcaacttg
tttctctttcaaggttttcgtctggttcctttccttgtagagttgcgggcggtaatggac
tgggtttggacggacaccactctgtccctgtccgattggatgtgcgtggaggacatttac
gccaacattttcatcatcaaatgcagccgtgagactgaaaagaaatatccccagcccaaa
ggacaaaagaaaaagaagatggtgaaatacggaatgggcggactcatcatcatcttcttg
gtgtgcatcatctggtttccgctgctcttcatttcattggtcagatccgtggtgggtgtc
gtcaaccaccccattgacgtgactgtcaccgtcaagctcggaggctacgagcctctcttc
accatgagtgtccagcagcagtccatcaaacccttgacagaggtggaatatgaaaacctc
accaagaagtttgggaacaatgcggtggctatgcagttcatttctctgtacggctacgag
gacgtggtgacggccaccattgaaggcagttcgggctcggtgtggagaatcagccccccg
agcagacaggaagtcataaaagaactgctgggaagccccgctgacctaacgttgcgtctg
gcgtggaatttccaaagggacctgggaaaaggagggaccgtggagcacacgtttgacaaa
cattcaatcgacctggaaccggggaaccccgtaagggccgacctggcttctcttcttctc
ggcaatcgcaccaagccggtgcacgttccaaatatgtttccaaattacatccgggcgccc
aacggagcagaggccaaacccgccagtcaactatacgaaggaaatgaagaaggctaccag
aatgtcaccctgtcgctgaagagtgacaattcactcgactccagtggcaaacaggaatgg
tgggacattgccatcggaggctgcgccccttccgcgtgcggcctcctgtccatgatcata
ttcaacgacaaagtcagtccgcccagtcttggcttcctggctggatatggaatcatgggt
ttgtacgtctccgtggtcttggtcattggaaagtttgtccgaggcttcttcagtgagatc
tctcactccatcatgtttgaggagcttccgtgcgtcgaccgtatactgaagctttgtgtg
gacatattcctggtgcgtgaaactggagagctggagctggaagaggagctttattcaaaa
ctcatcttcctttatcggtcaccggaaaccatgattaaatggaccagggacgtccgtggc
cgagactga
DBGET
integrated database retrieval system
