Syngnathus scovelli (Gulf pipefish): 125978572
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Entry
125978572 CDS
T08785
Symbol
zswim8
Name
(RefSeq) zinc finger SWIM domain-containing protein 8 isoform X1
KO
K25207
zinc finger SWIM domain-containing protein 8
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sscv04121
]
125978572 (zswim8)
Ubiquitin system [BR:
sscv04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul2 complex
Target recognizing subunit
125978572 (zswim8)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_ZSWIM8
ZSWIM4-8_C
SWIM
Motif
Other DBs
NCBI-GeneID:
125978572
NCBI-ProteinID:
XP_049591965
LinkDB
All DBs
Position
12:complement(21854..37934)
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AA seq
1918 aa
AA seq
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MELMFAEWEEGERFSFEDSDRFEEDSLCSFISEAESLCQNWRGWKKQSAGATSPTARATD
GQVIPLVELSAKQVAFHIPFEVVEKVYPPVPEQLQLRIAYWSFPENEDDIRLYSCLANGS
PDEFQRGEQLHRIRAVKDPLQIGFHLSASVVPSQSGQSRGTYNVAVMFDRCRITSCSCTC
GAGAKWCAHVVALCLFRIHNASAVCLRAPVSESLSRLQRDQLQKFAQYLISELPQQILPT
AQRLLDELLSSQSTAINTLCGAPDPTAGPSVSDQSTWYLDESTLSDNIKKTLHKFCGPSP
VVFSDVNSMYLSSTEPPAAAEWACLLRPLRGREPEGIWNLLSIVREMFKRRDSNAAPLLE
ILTEQCLTYEQIISWWYSVRTSASHSSASGHTGRTNGQSDVAAHACASMCDEIVVLWKLA
VLDPTISPCRRLELASHLKHRHLKVIEIVKRGQHRKSLDKLFQGFKPAVESCYFNWQMAY
PLEGITSCHAEKKTANLSWPRGMQQQRAARASAAASAIREASELRGADCHSRGSARSSFQ
EEVVVRPKEMVLTKKKTIAVNGGGTMLVRLGGGALSLSLEDVEGKCFYKGTGSASGGKLK
LMKGFGKGGILGGCQNINAKQRTSSEDSSLEPDLAELSLDDGCSLTLGAEASNTFEYIPP
ASMGFPSNAPLPQESSCKNGNILDRKHSSGHATVAFKETDAAVFDLSEQFEDRTQQEDSE
ETRDVKPVHGDQPLANSCDGSPAESLGGLEEKMRAGTDAENREAAVCGIAPKEAEASNGG
LVVCEDDYQLYYLSPASEEGAYRQLVDSHEDGPDIFAGIKPLEQEERMEVLFACAESLHA
HGYNNEACRLAVDLAKELLANPPDLKVEQPQTKGKKNKVSTGRQTQVATNTFSKAAFLIT
VLSDRPELHNLAFNTGMFSLELQRPPASTKAFEVKLAYQESDIVALLKKLPMGLPEMSLI
RERAVQLRDGNYCGYRPVPPLMLASFIFDVLSAPVVSPTGCSSSSRKVSSEKPGDEELGF
DAAVSALGMKTTVSEAEHPLLCEGTRRVKGDLALALMITYKDDQTKLKKILDKLLDREGQ
THKPQTLSSFYSNKPAASSQRSPSKHGPSTSCGSTSFNSTSAAAAAAALARQEPADEQKS
VQNSTAGRSAPNLVPGGNQSDYQSESSTFKLDNTVSSRVALGERCGYGQRCWGSPARQKK
KHTGMASIDSSAPETTSDSSPTLSRRPLRGGWTATSWGRGQDSDSISSSSSDSLGSSSSS
GSNRAGCGARAKSTDTSRYKGRRPECHAPHVPNQPSEAAAHFYFELAKTVLIKAGGNSST
SIFTQPSVSGVHQGPHRNLHLCAFEIGLYALGLHNFVSPNWLSRTYSSHVSWITGQAMEI
GSAALNILMECWDGHLTPPEVASLADRASRARDLNMVRAAAELALSCLPHAHALNPNEIQ
RALVQCKEQDNTMLEKACVAVEEAAKGGGVYPEVLFEVAHQWYWLYEHSIIGGGLSQQRE
TLGRCGAKGCVSRRTPETSCGVGTTNAESAGVAVTAAAAIVPVISVGSNIYQSHGMSGQV
MVHAHTHGLHPYATIQTHLPTVCPPLCSPQYLGHPLQHTPRPAVFPVSGGTYPQGIHPAF
FGAQYPFSVATAPSPSMAASAVSFPAIPVPPMTQIAYPYHSESSLPMNSTVAGQDRLGVL
FCVHLRPRTDHICHLFLVGNLHTGSTFQAIQGSSLSSQPSLLPSTSYPAEDEHLQPISQQ
GMHYLHSAYRVGMLALEMLGRRAHNDHPNNFSRSPPYTDDVKWLLALASRLGVNYVYQFC
VGAAKGVLSPFVLQEIIMEALQRLNPAHFHTHLRTPAFHQLVQRCQHSYLQYIHHRLIHL
TPADYDDFVNIIRSARAAFCLTPVGVMQLNDVLQNLKRGKQTKELWQRISMEMATFSP
NT seq
5757 nt
NT seq
+upstream
nt +downstream
nt
atggaactgatgtttgccgagtgggaagagggggagaggttctcgtttgaagactctgac
cgatttgaagaggactctttgtgctctttcatttctgaggctgagagcctctgccagaac
tggaggggatggaagaagcaatctgctggagccacatctccgactgcgagggctacagat
ggtcaggtaattccattggtggagttgtcagccaaacaagtagcctttcacatcccattt
gaggtagtggagaaggtttacccccctgtgccagaacaacttcagcttcgaattgcatac
tggagcttccctgaaaatgaggacgacatcaggttatattcatgcctggcaaacggaagc
cctgatgaatttcagcgtggtgagcagttgcaccggatcagagccgtaaaagaccctctg
caaatcggtttccatctcagtgcaagtgtggtgcccagtcagtccggacagtctagaggc
acctacaacgtggcagtaatgtttgatcgctgtcgcatcacttcctgcagttgtacgtgt
ggtgctggggcaaaatggtgtgcccatgtggtggcactctgtctgttcaggattcacaat
gcttcagctgtctgtctgagggccccggtgtcagagtctttgtccaggcttcagagggat
cagctgcagaaatttgcccagtatcttattagtgagctacctcaacagattctacccaca
gcccaacgactgcttgatgaactcttatcctctcagtccactgcaatcaacaccttgtgt
ggagccccagaccccacagctggaccatcggtttctgatcagagtacctggtatttggat
gaatccactctgagtgacaacatcaaaaagacactgcataaattctgcggaccttcacct
gttgtcttcagtgacgtcaattccatgtacctgtcttccactgagccaccggctgctgcc
gaatgggcctgtctgcttagacctttgagaggccgagagccagaaggcatttggaacctt
ctatccatcgtcagagaaatgttcaagagacgagacagcaacgctgcaccgctcctcgag
atactcactgagcagtgcctgacttacgaacagatcatcagttggtggtatagtgttcgg
acatctgcatctcacagcagcgctagtggacacactggacgaaccaacggtcaatcggat
gtcgcggctcatgcctgcgccagcatgtgtgatgaaatcgtggttctgtggaaactagca
gtgctagaccccacgatcagcccctgcaggcgtctggaactggcaagtcatctgaagcac
cggcaccttaaagttatagagatagtgaagcgtgggcaacatcgcaagtccctggacaag
ctcttccagggctttaaacctgctgtggagtcgtgttatttcaactggcaaatggcctac
cctctggaaggtatcacatcctgtcacgctgaaaagaagacagccaacttgtcctggcct
cgcggaatgcagcaacagagagcagcgagagcctctgcggcggcatcagctatcagggaa
gcttcggaactaagaggagcagattgtcattccagaggaagcgctcggtcgtcgtttcaa
gaagaggttgtagtgaggccaaaggagatggtgctaaccaaaaaaaagaccattgcagtc
aacggagggggaactatgttggttcgtctgggaggaggggctctctcactgtctctagaa
gatgtagaaggaaagtgcttttacaaaggaacaggtagcgcctccggggggaagttgaaa
ctgatgaagggctttgggaaaggggggattttagggggatgtcaaaatatcaatgctaaa
cagagaaccagcagcgaggacagctctctggagccggaccttgccgaactcagccttgat
gatggctgtagtctgactttgggggccgaggcaagcaacacgtttgaatatattcctcca
gcatcgatggggtttccctccaacgctccgctgccccaagagtcgtcgtgcaagaatggc
aacattttggatcgtaaacatagcagcggtcatgccaccgtcgcgttcaaagagaccgac
gcggctgtatttgatctttccgagcaatttgaggaccggacgcaacaggaggactcggaa
gagaccagagatgtcaagccagttcacggtgaccagccgctagccaattcgtgcgatgga
tctcccgccgagtctcttggtgggcttgaggagaaaatgcgtgctggaacagatgcagag
aatagagaagccgctgtgtgtggaattgctccaaaagaagcggaagcgtcaaatggtgga
ctggtcgtgtgtgaagatgactaccagctttactacctgagccctgcttcagaagaggga
gcatacagacagctggttgacagccacgaagacgggccagacatctttgcagggatcaag
ccattagagcaggaggaacgaatggaggtgctgtttgcctgtgccgagtctctacatgct
cacggatataataacgaagcgtgtcgactggccgtggacttagcaaaggagctcctcgcc
aaccctccggacctaaaagtggagcagccacagactaagggtaagaagaataaagtgtcg
acaggccgtcagactcaggtagccaccaacaccttttcaaaagcagccttcctcatcact
gtactcagtgatcggccggagctccataacctggccttcaacaccgggatgttctccctg
gaactccagagaccgccagcttcgacaaaagctttcgaggtgaagctggcttaccaagag
tcagatattgtggctttgttgaagaaacttcctatgggtcttccggaaatgtcgctcatc
agagagagggctgtgcaactccgagatggaaactactgtggttacagaccagtccctcct
ctcatgttggccagctttatttttgatgtcctctctgccccagttgtctctccaactggc
tgcagctcctccagtcgcaaggtcagcagtgaaaagccgggcgatgaagagcttggcttt
gatgcagctgtttcagcactaggcatgaagaccacagtaagtgaagcagaacatcctctg
ctttgtgaaggaacaagaagggtgaagggagatctggctctggccctcatgatcacctat
aaagatgaccagaccaagctcaagaagatccttgataaattattagacagagagggtcag
acacacaaacctcagaccctgagttccttctactccaacaagcccgcagcatccagccaa
cgcagcccatccaaacacggcccttcgacttcgtgtggaagcacatctttcaactccacg
tctgctgctgccgccgctgccgcattggctcgccaggagccggcggatgagcagaaatcg
gtgcagaacagcactgcaggacgcagcgctcctaatcttgtcccgggaggcaatcaaagt
gactatcaaagcgagtcaagcacattcaagcttgacaacaccgtgtcgagcagagtggca
cttggggaacgctgtggatacggccaacgttgctggggatctcctgcccgacagaagaag
aaacacactggtatggcaagtattgacagcagcgctccggaaacgacctcagacagttct
cccactctgagccgacggccattacgaggcggatggacggcgacgtcgtggggtcggggc
caagatagcgacagcatcagtagctcgtcttcagattctttgggatcctcctcctcgagc
ggatcaaatcgtgcagggtgcggtgccagggccaagagcacggacaccagcagatacaaa
ggacgtcgtccggaatgccacgcgcctcatgtccccaaccagccgtcggaggccgcggct
cacttttactttgagttagcaaagactgtgctcatcaaagctggaggaaactcatctact
tccattttcacccagccgtctgttagcggagtgcatcagggacctcacagaaaccttcat
ctgtgcgcctttgagattggcctatatgccctcggcctccacaactttgtctctcccaac
tggctgtccagaacctactcatcacatgtgtcctggattactggacaagctatggagatt
ggtagtgctgccctcaacattttgatggagtgttgggatggtcacctcacaccgccagaa
gtggcgtcattggccgatcgggcctcacgggcgagggacctcaatatggtccgtgcagct
gctgaactggctctcagctgcctgcctcatgcacacgctctgaacccgaatgagatccag
agagccttggtgcagtgcaaagaacaggacaacacgatgctagaaaaagcctgtgtagct
gtcgaagaagcagctaaaggtggaggtgtttatcctgaggtattgtttgaggtggcgcat
cagtggtactggctgtatgagcattcgatcataggaggaggcttaagtcaacaaagagag
actttggggcgatgtggggccaagggatgtgtaagcagaaggaccccagagaccagctgc
ggggtgggaacgaccaacgcggagtcggccggagtagcagttacggcggcggcagctatt
gtaccagttatctctgtgggttccaacatatatcagtcccacggcatgtcagggcaggtt
atggtccatgctcatacacatggccttcacccctacgccaccatacagacccatctgccc
acagtttgtccccccctttgttccccccaatacttgggtcatcctcttcagcacacacca
agaccggctgtctttcctgtgtctggaggtacatacccacagggtatccacccagccttt
tttggtgcccagtaccctttttctgtggctactgctccctcgccttccatggcagcaagt
gccgtgagcttccctgcaatccccgtgccgcccatgactcagattgcctatccctatcat
tcggagagcagtctaccaatgaactcgactgtagcaggtcaggaccggctgggtgtgctt
ttttgtgtacatttgagaccaagaactgaccacatctgtcatctttttttagttggcaat
ctccataccggctccacctttcaggctatccagggttcctcgctttcctcccagccgagt
ctattgccgagcacttcctaccctgcagaggatgaacaccttcagccaatcagtcaacag
ggcatgcactatctccattccgcctatagagttggtatgctagcgttggagatgctggga
aggagagctcataatgatcacccaaacaacttttcccgaagcccaccttacacagacgac
gtcaaatggcttttggcacttgcttcaagactcggagtcaactatgtgtaccaattctgc
gtgggagcggctaaaggtgtgctgagtccatttgttctgcaggagatcataatggaggca
cttcagaggctgaatcctgctcactttcacacccacctcagaactcctgccttccaccag
cttgttcagcgctgccaacattcctacctgcagtatatccatcacaggctcattcacttg
acacccgccgactacgatgactttgtcaacatcatccgcagcgccagagccgctttctgt
ctcacacccgtgggtgtcatgcagttaaacgatgtgcttcagaacctgaagagaggcaaa
cagactaaggagctatggcagcgcatttccatggagatggcaacgttttcaccttga
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