Syngnathus scovelli (Gulf pipefish): 125978605
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Entry
125978605 CDS
T08785
Symbol
col13a1
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sscv00536
]
125978605 (col13a1)
Glycosaminoglycan binding proteins [BR:
sscv00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
125978605 (col13a1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
125978605
NCBI-ProteinID:
XP_049592053
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Position
12:complement(251154..294991)
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AA seq
658 aa
AA seq
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MEMEQKWTDVGKMSEKLEKNPSQKLKWDKWRAFSSVSVCMAVSLLCVGICIGFCVRTTAL
QSRIVSLEQQQHLSAWMLSLEQVEPLILDRLDQILDKKLAARLPKTREVREAPYSCLCPP
GPPGPPGRAGFPGAPGEPGLSIIGPRGPPGQPGTRGFPGFPGPIGLDGKHGQNGPKGDMG
QRGPKGLPGEAGPKGEKGVCGDYAHRSLFVQDLPLKTLAALRSSQPLMLKQGEPGAQGPP
GPPGPPGNPGLNGASGSPGKPGEPGKPGKDPRLLPGLKGEPGLPGQKGDRGDVGPTGPEG
PKGDRGAKGDEGKRGFAPEKGEKGEAGFPGPPGSKGQSGTPGIPGKRGYRGEKGEATISS
LGMKGEPGSPGVPGLMGPKGEAGPEGPAGPRGPPGATGEPGKAEIHNNENDIRNIHLMGP
PGLPGPPGPPGFSGTKGEVGLPGPPGLDGEKGTKGDPGEGGRSEMLYGPPGPPGPSGPVG
PAGSQGPSGPKGEAGVGLRGEKGAAGQKGDKGDRGHLGLPGAHGLDGRPGPVGLLGPAGV
AGPAGPKGERGENGDVGLPGPIGPQGIPGFVGPQGLKGNRGERGKKGNRGAKGDKGDQGA
PGLDAPCPLGFRGFKGEKGEPGSPGLDGLDAPCPVGDDGLPVPGCWNKGQHPFQLAKK
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagcagaagtggacagacgttgggaaaatgagtgaaaagctcgagaagaac
ccttcccaaaagctcaagtgggacaagtggagagctttttcttccgtaagcgtttgcatg
gcagtatctctgctatgtgttggaatatgcattggcttttgtgtgcggaccacggcgttg
cagtccaggatagtaagtctggagcagcagcagcacctctccgcctggatgttgtccctg
gagcaggtggagccccttattttggacagactggaccaaatcctggacaagaaacttgca
gcgcgattaccaaagacgcgagaagtgagggaagctccctacagctgcttgtgtcctcca
ggacctccaggtcctcctggacgggcaggctttccgggagccccaggagaaccaggtctg
tcaatcattggaccacggggaccacctggtcagcctggaacaagaggatttccaggcttc
ccaggtcccattgggctggatggcaagcatggacagaatggccccaagggtgacatgggt
cagcgtggaccaaaaggactccctggagaagcaggacctaaaggagagaaaggtgtctgc
ggcgactacgcacatcggagcctctttgtgcaggatcttcccttgaaaaccttggccgcc
ttgcgctccagtcaaccgctgatgttgaagcagggtgagccgggagcgcaggggcctccg
ggaccaccagggcccccagggaacccaggtctgaacggagcaagcggctcgcccggtaag
cccggtgaaccgggaaaacctggaaaagacccaaggctattgccaggactgaagggtgag
ccaggtttaccaggacagaagggcgatcgaggcgatgttgggccgacgggtcctgaaggg
ccaaagggtgaccggggagccaagggagatgaagggaagaggggctttgcgccagagaaa
ggggagaagggagaagcaggcttcccgggccctccggggtccaagggccagagcggcacc
cctggcatccctggcaagcggggctataggggagagaagggagaggctactatttcctcg
cttggaatgaaaggagaacccggctcaccaggagtgccaggcctcatgggacctaaggga
gaggcaggccccgaaggcccagctggaccaagagggcccccaggtgcaaccggcgaaccg
ggaaaggctgagatccacaataatgaaaacgatattcgcaatatacatctgatgggccca
cctggattacctggacctccaggccctcccgggttttcagggacaaaaggagaagttggc
ctcccaggtcctccaggccttgatggagagaagggcacaaaaggtgatcctggggaagga
ggaagatcagagatgctctatggtcctccaggtcccccaggtccctccggaccagttggc
ccagcaggatctcaaggaccttcagggccaaagggagaggcaggcgtgggcctccgtgga
gaaaagggagcagcaggtcagaaaggtgacaagggggacagaggccatcttggactgcct
ggggctcatgggttagacggcagacccggtccagtgggtctgctggggccagcaggagta
gcagggccagcaggaccaaaaggagagagaggtgagaatggagatgttggactaccagga
ccaatcggcccgcagggcattcctggctttgtaggaccgcaaggactcaaagggaatcgg
ggagagaggggcaagaaaggcaacaggggggccaaaggggataagggagaccaaggagca
cctggattagatgccccgtgtccgttgggtttccgaggctttaaaggagagaagggtgaa
ccgggctcgccaggcctggacgggctggatgccccttgtcctgtgggagatgacggccta
cccgtaccaggctgttggaacaaaggtcaacaccccttccaactggctaagaagtaa
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