Syngnathus scovelli (Gulf pipefish): 125978893
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Entry
125978893 CDS
T08785
Symbol
cdh1
Name
(RefSeq) cadherin-1
KO
K05689
cadherin 1, type 1, E-cadherin
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04371
Apelin signaling pathway
sscv04514
Cell adhesion molecules
sscv04520
Adherens junction
sscv05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04371 Apelin signaling pathway
125978893 (cdh1)
09133 Signaling molecules and interaction
04514 Cell adhesion molecules
125978893 (cdh1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
125978893 (cdh1)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
125978893 (cdh1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
sscv03036
]
125978893 (cdh1)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sscv04515
]
125978893 (cdh1)
04090 CD molecules [BR:
sscv04090
]
125978893 (cdh1)
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
125978893 (cdh1)
Cell adhesion molecules [BR:
sscv04515
]
Cadherins
Major cadherins
125978893 (cdh1)
CD molecules [BR:
sscv04090
]
Proteins
125978893 (cdh1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
CADH_Y-type_LIR
Cadherin_pro
Big_13
Cadherin_4
PKD_4
Motif
Other DBs
NCBI-GeneID:
125978893
NCBI-ProteinID:
XP_049592694
LinkDB
All DBs
Position
12:complement(594930..602260)
Genome browser
AA seq
873 aa
AA seq
DB search
MRAATFAVWGGTLAVVLQAWAIVSAEEQSCVPGFQSDMKFFTVTRKHLGRGTVLGKVDFS
DCSGRTRFRFTSEDSRFSVQTDGVVKVNRPVSLHEGQIDFLMHTWDSQGRKMTIPVRLLY
HSERRDDAQVPVLQFPQSNGGLRRRKRDWVIPDINVAENDRGPYPLKVSQIRSNEDKQKK
ILYSITGPGADQPPVGLFTMDRDTGNLYLTQPLDREKQPRYLFKAFAVAVDAGNAEEPMD
IIVNVIDQNDNNPVFEKDTFLGEVAEASPKGFEVLKVNATDADQENNDNSDIRYRIVSQD
PEFPAANLFDINSVTGAIRINAGGLDREKYPRYTLEVEAADLRGKGLTAKAKVILTVTDS
NDNAPTFTQNSYDASMEENKVDVIVLKMTVTDGDEPHSPAWNAKFKIISGDPKKLFSVET
GSNKNEGIITTVKGLDFEQNSKHTLLVAVENEVPFAIPLPTSTATVIVNVLDVNEPPVFD
PVEKSVSKPEDLVVDADVVQYTASDPDIARKQTIMYKIVSDPAGWLNVAKDTGLITVKHA
MDRESIFVKDNKYTALIGAYDNDEVPATGTGTLMILLEDVNDNAPTIEERFFTVCNKKPV
PQLLSVTDKDGPGFAAPYRVALEGLSRNNWTARMNDSKTGIILNLATELASGEYTVVLRV
ADNQGLEQDSTVQAKVCDCTGEDVMCKGRVAAGADLPVILGILGGILLLLLLLLLLLLLA
RRRRGEPKEPLLQDDDFRDNIYYYDEEGGGEDDQDYDLGVLHQGLDNRPEVFRNDVKPVY
LTAPQYRPRPANPEEIGNFIDDNLKAADNDPTAPPYDSLLVFDYEGGGSDAGSLSTLNSS
SSGDQDYDHLGDWGPRFKKLSDMFGGGEDDDML
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atgagggccgccacgtttgcggtgtgggggggaactttggccgtcgttcttcaggcttgg
gccatagtttcagctgaggagcaatcatgcgtgcctggctttcagtcagacatgaagttt
ttcactgtgaccagaaagcacttaggaaggggcaccgtgttgggcaaagtggacttctca
gactgctcaggtcgcacaagatttcgttttacaagtgaagactcgcgtttctcggtccaa
actgatggcgtcgtgaaggtcaacaggccggtgtctcttcatgaaggtcaaattgacttt
ttgatgcacacctgggactctcaagggcgcaagatgaccattcctgtcaggctcttatat
cattccgagagacgtgatgatgcccaagtgccagtcttgcaattcccccagtctaatgga
ggattacggaggagaaagagagactgggttattccagacattaacgttgcggagaatgac
cgaggtccttatcccctcaaagtatctcaaattcgctccaatgaagacaaacagaagaag
atcttgtatagcatcactggtccaggagctgatcagcctcctgttggtcttttcaccatg
gacagagacaccgggaatctttacctcacacaaccgctggacagggaaaagcagcccagg
tacttgtttaaagccttcgccgtggcagttgatgctggaaatgctgaggagcccatggat
attattgtcaatgtcattgatcaaaatgacaacaaccctgtttttgaaaaggataccttc
ttgggagaagtggctgaggcatcaccaaaaggttttgaggtcctaaaggtgaacgccacg
gatgcggatcaggaaaacaatgacaattctgatatccgttaccgtattgtgagtcaagat
ccagagtttcctgcggcaaatctttttgacattaattcagtgactggcgccatcagaatc
aatgccggcggcttggacagagagaaatatcccaggtacactttagaagtggaggcagct
gacctgaggggtaaggggctgactgcaaaggccaaagttattctcactgtgaccgatagc
aacgacaatgcgccaacattcacccagaactcgtacgatgcatccatggaagaaaataaa
gtggacgttatagtcttaaagatgaccgtcacagatggtgatgaaccgcattctccagcc
tggaatgcaaagttcaagattattagtggtgaccccaaaaagttgttctccgtggaaacc
ggaagcaacaagaacgagggaatcattacgactgtcaagggtctggactttgagcagaac
agcaaacataccttgttggttgcagtggagaatgaagttccctttgctattcccctgccc
acctccacggccactgtgattgtaaacgtgcttgacgttaacgaacccccggtctttgat
ccggtggagaaatcggtgtcgaaacccgaagaccttgtcgtcgacgccgacgtggtgcag
tacaccgcttcggatccagacattgcacgcaagcagacgatcatgtataaaatcgtgagt
gacccggctggatggttaaacgtggccaaagatacaggcctgatcactgtgaagcatgcc
atggacagagagtccatctttgtcaaggacaacaaatacacggcgctcattggcgcatat
gacaatgatgaagttccagccacaggaacaggtacgctgatgatcctccttgaagatgtg
aatgacaacgcacccaccattgaggagcgtttttttacggtgtgcaacaaaaaacccgtg
cctcagttgctctcggtaaccgataaagacggacccggctttgctgctccgtacagagtc
gccttggagggcctgtccaggaacaactggactgccagaatgaacgactccaaaacggga
attatcttgaacttggccaccgagctggcgagcggcgagtacacggtggttcttcgagtg
gcggacaaccagggtttggagcaagacagcacggttcaggccaaagtgtgcgactgcacc
ggggaagatgtgatgtgcaaaggacgcgtggcggccggcgcagaccttcccgttatcctg
ggaattctgggaggaatccttttgcttctcttgctgctgctactgctgctgctgttagcg
agacggcgaaggggagaacccaaagagccgctactgcaggacgacgacttccgagacaac
atctactactatgacgaagagggaggtggcgaggatgaccaggactacgatctcggtgtc
ctccaccaaggtttagacaaccgtcctgaggtgttcaggaatgacgtgaagccagtctac
cttacagctccgcagtaccgacctcgtcccgccaacccggaggaaatcggcaacttcatt
gatgacaacctgaaggctgctgacaacgacccgacggcgcccccctacgactccctgctg
gtgtttgactatgagggaggcggctctgatgcgggaagcctgtccactctcaactcgtcc
agcagcggcgaccaggactacgaccacctcggcgactgggggcctcgcttcaaaaagctc
tctgatatgttcgggggaggagaagatgacgacatgctgtaa
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