Syngnathus scovelli (Gulf pipefish): 125979029
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Entry
125979029 CDS
T08785
Name
(RefSeq) collagen alpha-1(XVII) chain isoform X1
KO
K07603
collagen type XVII alpha
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
125979029
NCBI-ProteinID:
XP_049593008
LinkDB
All DBs
Position
Unknown
AA seq
1864 aa
AA seq
DB search
MDELTPLADFSGDLADERVVTESLTSTGRLTSLPPKGTGGSSHRNMASTSGGGGGGALEK
NILTQKSSTSYFTSSSVGVSSSNYSSSGVYLGGDAIGIGDGATGYLDNEGYSSGGGGGGR
GGSYIVSSVTKVSSSGGGKRTQGAVASSDRKQAGSSRSGGYEGSSSANSSPEFSRKDYGI
YCSGNTRGRSESRESEIRARLQSASPTAGRWAELDDVKKLLKVRSSSTSPVRASSTSAIM
GNPKKASVETQTISVTSRASQSVLTFGTGARSDGFHTVDSSGLLETGLPAGRFDTVGKAS
HYEGSLKSGHYSDAGRSDIGVRSVTYDAGARSGQYGGGVRSMSYDTGVWTGQYNGGVKAG
QYDTGIRSLNTGVVSAQYNGSLRSGQYDAGAVSSQYGGSLRSGHYDTGVRSSQYSISQKS
GIHDSGMRSTQYDSDAALPAFPWSTATLPAAAGTAAAVAGAGSSYSYQAGANNMSGGATP
IALGAPSLSVYGFQNNLAPSSGGAITTSAANANMTTYGVQKNVSGVGGGVVGAGVATTTR
SQNGDAYKDYMFVNSEKDNARETETLLLAKDSGKQFTRASGGGSLSGDSIQKEKLITTYS
EGTQLKAGMGNAYYGSSGVLMKDKGTHAQLRKKGGACGGGWCCCFDACCSWWKWLLGFLL
LFLLLLGLLFGLIALAEDVRKLKNRVATLESESAIISARTSRLVGLGGNTFVDGGGQSKT
DIFVFGAGGGGGSDSSSGTQIGVAAGAGAGGGTSAGGGVIAGTGAGAAGAGGGGAGVGGA
VGAGGAGGAVGAGAAGAGGAGDSSGTSAGGAGASGSSVGGAGASGTSIGGAGAGASGSGV
AGGGATGTGSSGSAGTTFGGGSSSGRTTIITGGTHIGGGTGGTGSSGTGSSGTGSSGGAG
TGVNGFGGTGSIGGGGSDSSSSHTSSSHTTSHTSSVSHHEGQVTANGFWTSGTGGYVDAA
ALHMAIQRMVRGEMQSQAFQAFITATMQGERGLPGPKGDTGQPGFPGAPGPIGHEGPQGP
KGQKGSHGEQGLEGPPGLRGREGPGGPRGEPGFGSKGDKGNVGEPGVPGPKGASGLVGAP
GPQGFRGEAGSPGLKGDQGLPGLVGPAGEKGAKGSAGQDGSKGSRGDLGSPGHPGLRGPA
GPPGDAGPPGLPGNPGQPGPKGDTGEAGRIINAAGVATVHIPGPPGPRGPQGVSGPAGPA
GPAGPKGDRGESGSTVRTSESFSSSVAERQYASGGSSSLRGPPGPPGPPGPPGQPGYGRP
GPKGDKGDSVVTSSSGTYYTGPPGPPGPEGQKGATGSPGPRGFQGERGQPGLPGRPGSLE
RESTYTGEHSVQASPGPPGPPGLPGPQGVKGDPGTPGIPGSSRVISGPPGPQGPQGPPGQ
PGSFSSSVEMRQYLTDYLSRSRQSGVPGPPGPPGPPGQPGTISGSIEEISTRLVAYLQRS
GSSSGISIGVQGLPGPPGPAGPGGALTVSGLIAMLQREEVRRYVIGPPGPQGPPGPPGGS
GGISSVYKIEEVATYVFNIMNERGIARGPPGPPGPPGAGGSGGAGYATVSIDYAALVRNP
EFRSWIGSAVHQGPPGPPGTPGQPGAPGPQGPPGVVLGGGRAYSLEELQRYLQGSSFRGL
PGPPGPPGPQGPAGGSGGTVTYSGTFPRETIRSEVHSYLTTDNVRRALTGPPGPPGPRGQ
KGDRGETGYVQTHSSHSQSSSQSDSRYASQRHELDVSKLSETLDYSSVAVKVSDYIKNQG
LLQEYLVEGPWRTQVRAVQGPPGPPGPPGAPGYSRVIAAYGNVTADLMDFFRTHGTIPGP
PGIAGQRGERGYPGPKGDKGDAGRPGLPGIPGAYTIQIPHRVQRSEAGGKEIKREKQEVA
ADGG
NT seq
5595 nt
NT seq
+upstream
nt +downstream
nt
atggacgagctaacgccactggcggacttctcgggagacttggcggacgaacgggtcgtg
acggagtccctaacgtccacgggcagactgacatccctcccgccaaagggaaccggcgga
tcgagtcacaggaacatggccagcaccagcggaggaggaggaggaggagctttggagaag
aacatcttaacgcagaagagcagcacttcttactttacttcttcctcggtgggcgtgagc
agcagtaactacagctcctcgggtgtttacctgggaggagacgccatcggaatcggcgat
ggtgcgaccggctacctggacaatgaaggctacagcagcggaggaggaggaggaggaaga
ggtggaagttacatcgtcagctcggtgaccaaagtcagctcgtcgggcggcggcaagaga
acacagggcgccgtcgcctcctcggataggaagcaggccgggtccagccgctcgggaggt
tacgaagggagttccagcgctaattcctcgccggaattttcccgcaaagactatggaatc
tattgctcgggcaacaccagagggagaagcgagagcagagaaagcgaaatccgggcccgg
ctgcaaagcgcctctcccacagccggcagatgggcggagctggatgatgtgaagaagctg
ctgaaggttcgctccagcagcaccagtcctgtgcgtgcatccagcacttcagccatcatg
ggcaaccccaaaaaggccagcgtggagacccagaccatctcggtgacctctcgggcctcg
cagtcggtgttaacatttggtaccggtgccagatcggatggcttccacaccgtggactca
tccggcttgctcgaaacgggtctgccagccggccgcttcgacacagtcggcaaagccagc
cattatgaaggcagtctcaaatcgggccactacagtgacgcgggaaggtcggacatcggc
gtgaggtccgtcacgtatgacgcaggcgcgagatcgggccagtacggtggcggtgtgaga
tcaatgtcgtatgataccggcgtgtggacaggacagtataacggcggcgtcaaagcaggg
cagtacgataccggcatcaggtccttgaataccggtgtcgtatctgcccagtataatggc
agtttaagatcaggccagtacgatgccggcgccgtatcctcccagtatggcggcagtttg
aggtccggccattacgacaccggtgtgaggtcatcccagtacagtatcagtcagaaatct
ggcatccacgactctgggatgagatccacccagtacgactcggacgcggcgcttccggcc
ttcccgtggtccaccgccaccttgcccgctgccgcaggcaccgccgcggcggtggcgggt
gccggcagtagttactcgtaccaggccggcgccaacaacatgtcaggcggagcgacgccc
atcgccctgggtgcaccgtccctgtcagtgtatggctttcagaataatttggcgccctct
tctggcggtgcaatcactacaagcgccgcaaatgccaacatgacaacttatggagttcag
aaaaacgtatctggcgttggtggtggtgtcgttggcgctggagttgctacaaccactcga
tcccaaaacggggacgcatacaaggactatatgttcgttaattcggagaaggacaacgcc
agggagacggagacgcttcttttagccaaagacagcggcaagcagttcactcgggcttca
ggaggaggttctctctcgggcgactccatccagaaggagaagttaatcacaacctacagc
gaaggaactcaactcaaggcagggatgggaaatgcttattatggatcatcgggagtttta
atgaaagacaaaggcacacacgcacagcttcgcaagaagggtggcgcatgcggaggcggc
tggtgctgctgctttgacgcctgttgctcctggtggaagtggttgctgggcttcctgctc
ctcttcttgctcctcctcggactcctcttcggcctcattgcgttggctgaggacgtgaga
aaactgaagaaccgagtggccactctggaaagcgagtcggccatcatctctgctcgaacc
agtcgtctcgtgggtctcggcgggaataccttcgtggatggcggaggccaatccaagacg
gacatattcgtgtttggagcaggcggaggaggaggctcggactctagttctggaacccaa
atcggagttgctgctggggctggtgctgggggtggtacttctgctggtggtggtgtcatt
gctggaactggtgctggggccgctggtgctggtggtggaggcgctggtgttggaggcgct
gtaggtgctggaggcgctggaggcgctgtaggtgctggagccgctggtgctggaggtgct
ggtgacagcagcggtacaagtgcaggtggcgccggagctagtggttccagtgttggaggt
gctggagcgagtggaaccagcataggcggcgctggagctggagctagtggaagcggtgta
gctgggggcggagctactggaactggctcaagtggcagcgcaggcaccaccttcggtggc
ggctctagttctggacgtactaccatcattactggcggtacccacattggtggcggcact
ggtggaactggatccagtggaactggctccagcggaaccggctccagtggcggcgcaggc
accggtgtcaacggttttggcggcaccggcagcattggcggcggtggcagcgactcctca
tctagccacacctctagtagccacacgaccagccacacctccagcgtgagccaccacgaa
ggtcaagtgaccgccaacggtttctggaccagcggcaccggcggttacgtggacgccgcc
gctcttcacatggccatccagcgcatggtcagaggagaaatgcagtcgcaggccttccaa
gcgttcataacggccacaatgcaaggagaacgaggactgcctggacctaaaggtgacacg
ggtcaacccggatttccaggcgctcccggtccaattggtcacgaaggtcctcaaggtcca
aagggccaaaaaggaagccatggtgaacaaggattggaggggcctcctggtttgaggggg
cgagaaggccctggtggaccaagaggtgaaccaggatttggctccaaaggagacaaaggt
aatgttggggaacccggagtccccggtccaaaaggtgcttctgggcttgttggagcacca
ggtcctcagggtttccgtggagaagcaggctcacctggtcttaaaggtgatcagggttta
cctggtttggttggaccggctggagagaaaggagctaaaggatcagcaggacaagatggt
tcaaaaggctcaagaggtgatcttggcagtcctggccaccctggacttcgagggccggct
ggtcctccaggagatgctggacctccgggactaccaggcaatccaggtcaaccagggcct
aaaggtgacaccggcgaagccggaagaattattaacgcagccggcgttgctaccgtgcac
atccctggaccacccgggcctcgtggacctcaaggagtatcaggtccagctggccctgct
ggtcctgcaggtcctaaaggtgaccgtggagaatctggatcaacagtgaggacatctgag
agtttcagctcaagtgtagctgagaggcagtatgcttccggtggttcgtcgtctctacgc
ggcccaccgggtccacctgggccacctggacctcctggtcagccaggttacggaagacca
gggcccaaaggcgacaaaggagattctgttgttacaagcagctctggaacttactatact
gggccaccaggaccacctgggcctgaaggacagaaaggagccacaggttctcctggaccg
agaggcttccaaggtgaacgaggacaacccggcttgccaggaagaccaggaagcttggag
agagagtccacctatactggagaacacagtgtgcaagcatctccaggaccaccagggcct
cctggactgccaggaccacagggagtcaaaggtgaccccggaactcctggaattcctgga
tcttctcgagtcatctcagggcctcctggtcctcaaggacctcaaggaccccctgggcag
cccggctccttcagttcatctgtggagatgcgccagtacttgacggactacctaagtaga
agcagacaatctggcgttcctggccctccaggtccacccggacctcctggacaacctgga
accatctcaggttccatcgaggagatctccactcgtcttgttgcctacttgcaacgttct
ggctccagctcgggcatcagcattggtgttcagggtctcccaggaccacctggacctgct
ggacctggaggagccttgactgtcagtggtctcattgccatgctgcagagagaagaagtg
aggagatacgtgataggcccaccgggtcctcaaggaccgcccggaccaccaggtggatca
gggggcatttctagcgtttataagatcgaggaggtagcgacatatgtcttcaacatcatg
aacgagagaggaatcgccagaggaccacctggaccaccaggacctccaggagcaggcgga
tcaggcggcgccggctacgcgacagtttcaatcgattacgctgctctcgttagaaatccg
gaattccgttcatggatcggatccgctgtgcaccaaggtcctcccggtcctcccggtact
cctggccaacctggcgcccctggtcctcagggaccgccaggggtcgtgttgggtggtggt
cgggcgtacagcttggaggagcttcagcgttacctgcagggctctagcttcagaggtctt
ccaggccctcccggacctccaggcccacaaggaccagccggtggttcaggtggcaccgtc
acttacagcggaaccttcccccgggagactatccgttctgaagttcacagctacctgacc
accgacaacgtccgacgcgccctcaccggacctccgggtcctccaggcccgagaggccaa
aaaggagatcgcggcgagacgggttacgttcaaacacacagcagccacagtcagagctcc
tcccagagcgactcccgctacgcctcccagcggcacgagctcgacgtcagcaagctgagc
gagaccttggactacagcagcgtggccgtgaaggtctcggactatatcaaaaaccaaggc
ctgctgcaggagtaccttgtggagggtccttggaggactcaagtaagagctgtacaaggc
ccgcccggcccaccggggccccccggagcgcctggttacagccgtgtgattgcagcttac
ggcaacgtcacggctgatctcatggacttcttccgaactcacggaaccatccctggtcct
ccgggaatcgccggacagagaggagaaagaggctacccaggacctaagggagataagggt
gatgctggacgtccgggtttaccaggaattccaggggcgtacacgatccaaattccacat
cgcgtacagaggagtgaagcaggaggtaaagaaatcaagcgggagaagcaagaagttgct
gcagacggcggctga
DBGET
integrated database retrieval system
