Syngnathus scovelli (Gulf pipefish): 125979045
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Entry
125979045 CDS
T08785
Symbol
sorcs3b
Name
(RefSeq) VPS10 domain-containing receptor SorCS3 isoform X1
KO
K27083
VPS10 domain-containing receptor SorCS3
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125979045 (sorcs3b)
Membrane trafficking [BR:
sscv04131
]
Endocytosis
Others
Others
125979045 (sorcs3b)
Endosome - Lysosome transport
125979045 (sorcs3b)
Endosome - Golgi transport
125979045 (sorcs3b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sortilin-Vps10
Sortilin_C
PKD
PKD_4
BNR_6
Motif
Other DBs
NCBI-GeneID:
125979045
NCBI-ProteinID:
XP_049593042
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All DBs
Position
12:3883771..3963648
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AA seq
1164 aa
AA seq
DB search
MGLWSRATFFLFFALLLLNAFHDKFKAEAGISSAADRRFDLLKSRVGRDKTHAGVSFQVL
DDNSGQKWGEKTRLGTESIGEGAFSDTKYVFKRSVQGVAGYRTEYRRAGEETKGSNSRQS
DPYLDTSTFALSGDSAHNQAMVHWSGHNSSVILILTKLYDFNLGAVTESSLWRSSDYGST
YTKLNDKVGSRTVLSYLYVCPTNKQKIMMLSDPEVESAVLISSDEGASFEKHPISFNVLS
LLFHPAQENWILAYSHDSKLYSSVDFGKRWQLVHDNVMPGRFYWAVMGLDRESDVVHIET
RIAKGRAQYVKCRAQRCTEANKQYLFPGHVDTNSLVVQDEYVFTQVTKTGRASYFVSYMR
EPFRRMQLPKYCLPKDMHIISTDEKQVFAAVQEWNQNHTYSLYISDSPGVYFSLSLENLR
TTRGPTGNLLVDFYKVEGISGMYLANKLVDHRVKTFITYNKGQTWALLPAPATDVAGNSI
HCVTPFCSLHLHLEMSENPYTSGPITSKKSVPGIIVATGNIGMELSSANLGMFITSDAGN
SWRQIFDEEHNIWFLDNGGALLAVLHAPTPIRHLWISLDEGKKWDRHTFSLAPLYVDGVL
MESESDNHIITFFGHFSHRSEWQLMKIDYKGLFTQRCMDGDYQTWSLHNKGELCVMGEKQ
IFMKRRPGNRCMLSQDYSRIYSSESCQCTAYDFECDYGWERRTDGKCSPAFWFDPNGTAK
SCSAGQSFLNSTGYRKVLSNNCKEVGRNVYSPRRQGCRSRPPRGLRLTTGSGELSARAGS
NVTFMVHLQDGDSPRTSVQLDFGDGIRITYSNLSRADDGIQHAYRATGIYRVTAAAENSL
GSDSCVLYLHITSPVERVYLSVPLVASRGKETNLTVMVWPSHIRTLTFFWWIGNSSEPII
TLDGSISYTFQKEGTNKVTVQVASGSTVLQDSRDITVKEFFRSLLLSFSPTLDEHNPDIR
EWREDIGRVVQTALSQVAGVPTSQLLVSLSPGLPTTAELFILPDVLTPNEHKRQTREELQ
TISDIFVSLLNQGLVHFELKVGTRVSVYITQQTLAPLVDSSTLHSGSAMLVMICVVFVGL
AAFFIYKFKRKIPWIHVETEDSREKEPEMISTVSQKDDMSKVNLANFPSEKDFTEKQMDA
RKRGSMGRNMDRIVTREYPNCTNV
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgggactgtggtcgcgtgctactttctttcttttctttgccctgcttcttctcaacgcc
tttcacgacaagtttaaggcggaagcaggaataagttctgcagcggacaggaggtttgac
ctgctgaagtctcgagttggccgagacaaaacgcacgcgggagtctcgttccaagttttg
gacgataactccgggcaaaagtggggtgaaaagacacgactcgggaccgagtcaattgga
gaaggggctttttccgacacaaaatatgtatttaaaaggagcgtccaaggggttgccggc
taccgaaccgaatatcggcgcgcgggggaagaaaccaaaggttctaactcgcggcaaagt
gatccctatctggacacctccacctttgctctgtcgggagattctgcgcacaaccaggcg
atggtgcactggtccggacacaacagcagcgtgatcctcatcctgacgaagctatacgac
ttcaacctgggcgccgttaccgagagctctctgtggaggtccagcgactatgggagcacc
tacaccaagctcaatgacaaagtgggctcgaggaccgtgctgagctacctttacgtgtgc
cccaccaacaaacaaaagataatgatgctgagcgacccggaggtggagagcgctgttctg
atcagctcggacgagggggcgagcttcgagaagcatcccattagcttcaacgtcctcagc
cttctcttccacccggcgcaggagaactggatcctggcctacagccacgatagcaagctg
tacagctccgtggacttcgggaagaggtggcagctcgtgcacgacaacgtgatgccgggt
cgattctactgggccgtaatggggctggacagagagtcggacgtggtccacatcgagacg
cgcatcgccaaaggccgtgctcagtacgtgaagtgcagagcccagcgctgcacggaggcc
aacaagcagtaccttttcccgggacacgtggacaccaattcgctggtcgtgcaagatgaa
tacgttttcactcaggtgaccaagactggacgggccagctactttgtctcctacatgaga
gaaccgttcagacgcatgcagttgcccaaatattgtctgcccaaggacatgcatatcatt
agcacagatgagaagcaagtgtttgctgcagtccaagaatggaaccagaaccacacgtac
agcctgtacatctccgactcgcccggcgtctacttcagcctctcgctggaaaatctccgg
accaccaggggacccactggaaacctgctggtcgacttctacaaggtggaggggatcagc
ggcatgtatctggccaacaagctggtggaccaccgcgtcaaaacgttcatcacctacaat
aaaggtcaaacgtgggccctgctgccggcgcctgccaccgacgtggccgggaacagcatc
cactgcgtgacgcctttttgttcactgcatcttcatctggagatgtcggagaatccctac
acgtccggacccatcactagcaaaaagtcggtaccgggaatcattgttgccacaggtaat
atcggaatggaattgtcctccgccaaccttggcatgttcataacgtctgatgcaggaaat
agctggcgacagatctttgatgaagagcacaacatttggttcctggacaacggcggggct
ttgctggccgtgctgcacgcgcccacgccgattcgacacttgtggatcagtctagacgaa
ggcaagaagtgggaccgtcacactttctccctggcgcctctctacgtggacggagtcctg
atggagtcggagtccgacaatcacattatcactttctttggacacttcagccatcggtca
gagtggcagctgatgaaaattgactacaagggactgttcactcagcgatgcatggatgga
gactaccagacatggtccctgcacaacaagggtgagctgtgcgtgatgggtgagaagcag
attttcatgaagcgtcggcccggaaaccgctgcatgttgtcccaggattactccaggatc
tattcatccgagtcatgccagtgcaccgcctacgacttcgaatgcgactacggctgggaa
cgtcgcaccgatgggaagtgctcccccgctttttggttcgatccaaatggcacggcaaaa
agttgcagcgcgggccagagtttcctcaacagcaccgggtatcgcaaggttctgtccaat
aactgcaaagaggtcggacggaacgtgtactcgccaagacgacaggggtgtcgctccaga
ccgccccgaggccttcgcttgaccaccggcagcggcgagctcagcgcccgcgccggaagc
aacgtgacgttcatggttcatctccaagacggagactcgccgaggaccagcgtccagctt
gacttcggcgacggcatccggatcacttactccaacctgagccgggccgacgacggcatc
cagcacgcctaccgagccacggggatttaccgcgtgacggcggcggccgagaacagcctg
ggatccgacagctgtgtgctctatctgcacatcaccagtccagttgagcgagtgtacctt
tcagttcctctggtggcctccaggggcaaggagaccaatctcacagtgatggtttggccg
agtcacatcaggacgttgactttcttctggtggatcggcaacagctcagagcctattata
acgctggatgggagtatctcgtacacgttccagaaggagggaacaaataaggtcacggtc
caggtggcttctggaagcacggtgctgcaggattccagggatatcaccgttaaagagttt
ttcaggtcgctgctgctgtccttttcgccgacgcttgacgagcacaatcctgacatccgc
gagtggcgggaggacataggccgcgtggtgcagacagccctgtcacaggttgctggcgtc
cccaccagtcagttgctggtgtctttgtctcctggacttccaaccacggcggagctcttc
atcctgcccgatgtgctcacgccaaatgagcacaagaggcaaacgcgggaggaactgcag
acgatatctgacattttcgtcagcctcctcaaccaaggcctggtccactttgagttgaag
gttggcactcgtgtcagcgtctacatcactcagcaaactttggcgccgctagtggattcc
agcaccctccacagcgggtcggccatgttggtgatgatctgcgtggtgtttgtgggctta
gcggccttcttcatttacaagttcaaaaggaaaatcccttggatccacgtggagacggag
gacagtcgggagaaggaacccgagatgatcagcacggtcagtcagaaggacgacatgtcc
aaagtcaacctcgccaactttccctcggagaaggacttcacggaaaagcagatggacgcc
aggaaacgaggatcgatggggagaaatatggacagaattgtaacgagggaatatccaaac
tgtacaaacgtctaa
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