Syngnathus scovelli (Gulf pipefish): 125979186
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Entry
125979186 CDS
T08785
Symbol
cacna1bb
Name
(RefSeq) voltage-dependent N-type calcium channel subunit alpha-1B isoform X1
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04010
MAPK signaling pathway
sscv04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
125979186 (cacna1bb)
04020 Calcium signaling pathway
125979186 (cacna1bb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
sscv04040
]
125979186 (cacna1bb)
Ion channels [BR:
sscv04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
125979186 (cacna1bb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
125979186
NCBI-ProteinID:
XP_049593101
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All DBs
Position
13:6433970..6557009
Genome browser
AA seq
2377 aa
AA seq
DB search
MARFTEDLPTRYGGSTGGGAGGGGRGAPGAGRGGARGGGAPSGQRMYKQSMAQRARTMAI
YNPNPVKQNCLTVNRSLFIFREDNVIRKYAKRITEWPPFEYMILATIIANCIVLALEQHL
PASDKTPMSERLDDTEPYFIGIFCFEAAIKIIALGFAFHKGSYLRNGWNVMDFVVVLTGI
LAKVGSDFDLRTLRAVRVLRPLKLVSGIPSLQVVLKSIMKAMVPLLQIGLLLFFAIVMFA
IIGVEFYMGKFHTTCFNIDTGEKAAEWPCGLEPPARLCPNGTQCREYWTGPNFGITNFDN
ILFAVLTVFQCITMEGWVDVLYSTNDVAGNTWNWLYFIPLIIIGSFFMLNLVLGVLSGEF
AKERERVEKRQEFLKLRRQQQIERELTGYLEWICKAEEVLLEEEEEIAEEKSPLDGAWYK
RKQNLPVLKRSKIKKGKNDLIGAEEGEDPFADISSVAPPGSPFGRASVKSSTKMDSSSYF
RRKEKRTRFFIRRMVKAQSFYWIVLCLVGLNTLCVAIVHYDQPAWLTTALYTAEFVFLGL
FLTEMTLKMYGLGPRNYFHSSFNCFDFGVIVGSIFEVIWDMIKPGASFGISVLRALRLLR
IFKVTKYWNSLRNLVVSLLNSMKSIISLLFLLFLFIVVFALLGMQLFGGQFNFEDETPTT
NFDTFPAAILTVFQILTGEDWNAVMYHGIESQGGVRRGMFSSVYFIVLTLFGNYTLLNVF
LAIAVDNLANAQELTKDEEEQEEAANKKLALQKALEVKEVSPMSAANISIAAFVKQNRDA
ISRRSSINSIQSLKEQQRTAKTMSVWEQRTNQLRRHNIRASNEALFNELDPEERLRLSSV
LHLHPDMMTHLDRPLVVESKNSDLTNRPPEEGEQDSTGDNFHSHTRKHHRQRDRNGEGRD
GCDGRATRHHIHHSRSKDHNSNGAQTKERRGESSHSRDEGQRRRRHHHTGSPEEEISDAR
GGGQERGHRHHHSHRTAKEGNGTLANGAHGERRGRGRGGEGNGERKGRCSRMVRAQSTLD
GDESKKCKKSHREMLSDGEEEVLATSPLSIGDKQEDADNQKNSTRASQAGLNSNTIHIPV
TITAPPGETTIIPMNNIECGNFGVSEEKKALEEDDAVNRPRQILPYSSMFIFGQTNPVRR
LCHYVVNLRYFEMCILMVITMSSIALAAEDPVQSNAPRNNVLKYLDYVFTGVFTFEMVIK
MIDLGLLLHPGSYFRDLWNILDFIVVSGALVAFACSGTKGKDINTIKSLRVLRVLRPLKT
IKRLPKLKAVFDCVVNSLKNVLNILIVYILFMFIFAVIAVQLFKGKFFYCTDESKGLEKD
CRGQFLDYDKVERGRDVEAQPREWKKYEFHYDNVLWAFLTLFTVSTGEGWPLVLKHSVDA
TYEDQGPSPGFRMETSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKAMSECSLEKNER
ACIDFAINAKPLTRYMPENKQSFQYKMWKFVVSPPFEYAIMTLIALNTVVLMMKFYGAPD
LYESMLKYLNIVFTALFTLECILKIIAFGPLNYLKAAWNVFDFVTVLGSITDILVTEIKD
KMINLSFLRLFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQ
VFGNIELNEETAINHHNNFQTFFQALTLLFRSATGEAWHEIMLSCLSNRSCDKLSGTTGK
ECGSDFAYFYFVSFIFLCSFLMLNLFVAVIMDNFEYLTRDASILGPHHLDEFIRVWAEYD
PAACGRMTYRDMYEMLRDMSPPLGLGKKCPPRIAYKRLVRMNMPIAEDNTVHFTSTLMAL
IRTALEIKLASGVLAQHLCDIDLKRELNRVWPSLSQKTVDLLVTPHKYNELTVGKVYAAL
MIFDYYKQNQAKRLQQQHPSGGVQSKLGALFRPILPLGHIKEVEPPIPSPKQLLPLHPES
EAKTSPLPPVRTTATTLVNKDTMLDQKSSIKHSQSGDVSLTALRPKGRRKLPRGQSEDVQ
CSARPQEVVEMKPVENISDTEAYPSLDGHGRAASLPRLNAEYYRSHPRHAPGTHLAPIVD
LSPIRRSASSLTPQHNQEVILKDYNLIRPGQHQSSAGSGAVQGQDRVHHHHHHHRCHRRR
DKDKEKKQKSLDRATSVQPPSTVDPSAEGMSRERARERDRSRPHERRHHSSAGEKQRYYS
CERYGSRETSHAKSAGPSRSTSPGEGQDTAILKQYGSTVGKAAPSGSSTSGRGRRQLPQT
PLTPRPAVAYKTANSSPLSSAASTTMAGHHTRVSRGLSEHERLHGDTDRSPIPVTCIGSD
PNLAHQLQGAPQQALLEDMEDFQDAVSSQVLSHSARAGASATTSSSHDAAAVPVTAAATQ
ERADVVPNGYHFTFGVNSASNSRGTGSLREREDEDWC
NT seq
7134 nt
NT seq
+upstream
nt +downstream
nt
atggctcgtttcactgaagatctccccacccgctatggagggagcacaggcggcggcgcc
ggaggaggagggagaggagcgccgggcgcgggaagagggggagcccgcggtggaggcgct
ccgagcggccaaaggatgtacaagcagtcgatggctcagagagcccggacaatggccatt
tacaacccgaaccccgttaagcaaaattgcttgactgtcaaccgctccctcttcatcttc
cgggaggacaacgtgatcaggaaatatgccaaacgtataacagagtggcctccatttgaa
tacatgatcttggctacaatcatcgccaactgcatcgtcttggccctggagcaacatcta
cctgccagcgacaaaacacccatgtcggagcgcctggacgacacagagccctactttatt
ggaatattctgtttcgaggcagccattaagatcatcgccctgggctttgcattccataaa
ggctcctacctccgtaacggatggaatgtaatggactttgtggtcgttctcactggaatc
ctggcaaaagtgggctccgactttgaccttcgaacactgcgggctgtaagagtgctgcga
cccctcaaactagtgtccgggatccccagcctccaagtggtgttgaagtcgataatgaaa
gccatggtgccattgcttcagatcggcctgctgcttttctttgctattgtcatgtttgcc
attatcggggtggagttttacatgggcaaattccacactacctgcttcaacattgacaca
ggtgaaaaagcagcagaatggccttgtggtctcgagcctccagcaaggttgtgtcccaat
gggacccagtgcagagaatactggaccggacccaattttggcattaccaactttgacaac
atcctgtttgccgtgcttacggtgttccagtgcatcacaatggagggctgggtcgacgtc
ctctacagtaccaacgatgtggcaggaaacacatggaattggctctacttcatccctctc
atcatcattggctctttcttcatgctcaacttggtgcttggtgtgctatcaggagagttt
gccaaagagagagagcgggtggagaaaagacaagagttcctcaagcttcgaaggcagcaa
caaattgagagagagcttacgggatacctcgaatggatctgcaaagctgaggaggtgttg
ctggaggaggaggaggagattgcagaggagaagtcacctctggatggtgcgtggtacaag
aggaaacaaaatctgccagtcctgaaacgaagcaaaattaagaaaggtaaaaatgacctg
atcggtgctgaagaaggggaagatccatttgctgacatctcctctgttgctccccctggt
tctccctttggtcgggccagtgtgaaaagcagcacgaagatggacagctcatcttatttt
cgtcgtaaggagaagcggactcgtttctttatccggcgaatggtaaaagcacagagcttc
tactggatcgttctgtgtctggttggcctgaacaccctgtgcgtggccatagtccactac
gatcaacccgcgtggcttacaacagccctgtacacagcagagtttgttttcttgggtttg
tttctcaccgagatgaccttgaagatgtatggccttggaccacggaattatttccactcc
tcctttaactgctttgattttggggtgattgtgggaagtatttttgaggtgatctgggac
atgatcaagcccggagcatcatttggaatcagtgtgttgagagcactgagactgctaaga
atcttcaaagtcactaagtattggaactccctgaggaaccttgtggtctctcttcttaat
tccatgaagtcaattatcagtttgcttttcctcctctttctattcatcgttgtcttcgct
ctgctgggcatgcagctctttggaggacaattcaactttgaggatgaaacaccaacaaca
aactttgatacctttccagcggccatcctcactgtgtttcagattttaactggggaagac
tggaatgcggtgatgtaccatggcatagagtcacaaggaggtgttcgccgtggaatgttt
tcttccgtctacttcattgtccttacactttttggaaactacaccctgctgaatgtcttc
ttggctatcgctgttgataatcttgcaaatgcacaggagctaacaaaggatgaagaagaa
caggaggaggcagccaataagaagcttgctctgcagaaggctttggaggtgaaggaagtc
agtcccatgtcagcagccaacatctcaatcgcggcttttgtaaagcaaaatcgagatgca
atctctcgcaggtcgtccatcaacagcattcagtcacttaaggaacagcaacgaacagcc
aaaaccatgtcagtgtgggagcagaggaccaaccaactgaggagacacaacataagagct
agcaacgaggctttgtttaatgaactcgacccagaggaacgcctacgactgtcctctgtt
ctccatctccatcctgacatgatgactcacctggatagaccccttgtggtagagtccaag
aacagcgaccttactaacaggccacctgaagagggagagcaagacagcacaggagacaac
ttccattcgcacaccaggaagcaccatcgccaacgggacaggaacggcgagggcagggat
ggatgtgatggtcgtgcgacgaggcatcacattcatcacagccggagcaaagatcacaat
agcaatggcgcacagactaaggagaggagaggggagagtagccacagtcgggatgagggg
cagcgacgcaggcggcatcatcacacgggctccccggaagaggagatctctgatgcacga
ggaggagggcaagagagagggcatcgccaccaccactcacaccgtacagcgaaagaggga
aatgggacattagctaacggtgcccatggagagcgcagaggccggggaaggggaggggaa
ggtaacggagagagaaaaggacgttgctctcgaatggtcagagcgcagtcgactctggat
ggagacgaaagcaaaaagtgcaagaaaagtcatagggagatgctgtctgatggtgaggag
gaggttcttgccactagccctctcagtattggagacaagcaagaggacgctgataaccaa
aagaactccacaagagccagccaggccggccttaacagcaacacaattcacatccctgtc
accataactgccccacctggagaaacaaccattattcccatgaacaatattgagtgcggc
aactttggagtcagcgaggagaagaaagctctggaagaagacgatgctgtcaataggccc
cggcaaatcctcccctatagttccatgttcatttttggacaaacaaacccggtacggcga
ctgtgtcactacgtggtcaacctgcgctactttgaaatgtgcatcctgatggtcattacc
atgagcagcatcgccttggcagctgaggatcctgtgcaatccaatgcaccgcgtaacaat
gtgctcaagtatctggattatgtattcactggagtgtttacatttgagatggtgattaag
atgattgacttgggactgctcctccaccctgggtcctattttcgcgatttatggaacatt
ctcgacttcattgtggtcagtggcgctcttgtggcattcgcctgctcagggacaaaaggc
aaggacatcaacaccattaagtccctgagggtcctccgagtcttgcggccactcaaaacc
attaaacgtctgcccaaactaaaggctgtgttcgactgtgttgtgaattctctgaagaat
gttctcaacatcctcatcgtatacatcctcttcatgttcatctttgctgttatcgctgtg
cagctttttaaaggcaaatttttctactgcactgatgagtccaagggtctagagaaagac
tgcaggggtcagtttctggactatgacaaagtggaacgcggacgtgacgtggaagctcag
cctagagagtggaagaaatacgagttccactacgataacgtcctatgggctttcttaacg
ctattcaccgtctccacgggagaaggctggcctctagtgctgaagcattcagtggatgcc
acctatgaggaccagggtcccagcccaggttttcgcatggagacatctatattctatgtg
gtgtactttgtagtgttcccattcttctttgtcaacatatttgtggctttgattatcatc
acttttcaagagcagggagacaaagccatgtctgagtgtagcctggaaaaaaatgagagg
gcttgcattgactttgccataaatgccaagccgctgacaagatacatgcctgagaacaag
caatccttccagtataagatgtggaaatttgtggtatcacctccatttgaatatgctatc
atgactttaattgccctcaacactgtcgtgctgatgatgaagttttatggagcacccgac
ctatatgagtccatgctgaaatacttgaacatcgtcttcactgccctcttcactcttgag
tgcatccttaagattattgcctttggtccactgaattacttgaaagcagcctggaatgtg
tttgactttgtaacggtgctgggaagcatcacagacatcctggtgacagagattaaggac
aagatgattaacctgagcttcctgaggctgttcagagcagcccggctcatcaaactgcta
cggcagggctacaccattcgcattttgttgtggacgttcgtgcagtccttcaaggccctg
ccttatgtttgcctgctcattgcaatgctcttcttcatctatgccatcatcggaatgcag
gtgtttggtaacattgagctgaacgaggagactgcaataaatcaccacaacaacttccag
acctttttccaggctttaactcttctgttcaggagtgccactggtgaagcgtggcatgaa
attatgctttcatgtctcagtaatcggtcatgtgacaaactctcaggaactacagggaaa
gagtgcggaagtgactttgcctatttctactttgtctccttcattttcctctgctccttc
ttgatgctaaacttatttgttgctgtcatcatggacaactttgagtatctgactagggat
gcttccatcttgggtcctcatcaccttgatgagttcatccgtgtatgggcagagtatgac
ccagctgcatgtggccgtatgacttatcgtgatatgtacgagatgctacgagacatgtcc
cctcctctaggtttgggaaagaaatgcccaccccgcatcgcctataagcgtttggtgagg
atgaacatgcctattgcagaggacaacacagttcatttcacctccacactcatggctctg
attcgcacagccctcgagatcaagctggcatctggagtcttagcacagcatctatgtgat
attgacctgaaaagagaattaaacagagtttggcccagcttgtcacagaagactgttgac
ctgctggtgacgccacacaaatacaatgagctgactgtggggaaagtgtatgcagctctc
atgatctttgattactataagcagaatcaagccaagagacttcagcagcagcatccatca
ggaggagttcagagtaaactgggagcgttgtttcgtccaatacttccccttggtcatatc
aaggaagtagagcccccgatacccagtcccaaacagctattacctctacaccctgagtca
gaagcaaagacgtcgcctcttccacctgtcagaaccactgccaccaccttggttaacaag
gacacaatgcttgaccagaagagttccattaaacattcccagtctggagatgtttctttg
acagcactgagacccaaaggccggaggaaactaccaagaggccagtcggaagatgtacag
tgttctgcaagacctcaggaagtggttgaaatgaagccagttgagaacatctcagacacc
gaggcatacccaagcctggatggtcatggccgagcagcttctctgcctcggctcaatgca
gagtattaccggagccaccctcgccacgcccctgggacccacctggcaccaattgttgac
ctcagtcccataagacgctcagcttcctcgctgaccccacagcacaaccaggaagtgatt
cttaaggattataacctgatacgaccaggccaacatcaatcatcagcaggatctggagca
gtccaaggccaggaccgagtccatcatcatcatcaccaccaccgctgccacagacgtagg
gacaaggacaaagagaaaaagcaaaaatccctggatagagctacatcggtgcagccgcca
agtactgttgacccctcggccgaaggtatgtctagagaacgagcaagggagcgtgaccgc
agtcgcccgcacgagagaaggcatcattcctctgcaggcgagaaacaacgctactactcc
tgcgagcgttatggctctagagagacaagccacgctaaatcagccggtccaagccgatcc
acatctccaggagagggacaagacaccgccatccttaaacaatatggtagcactgtgggt
aaagccgccccatctggttcaagcacatcgggtcgtggtcgcaggcagctcccccaaaca
cccctcactcctcgtcctgccgtggcctataagactgcaaactcctcccccctctcttct
gctgccagcaccactatggctggacaccacactcgtgtcagccgtggcctttcagaacac
gagcgcctgcacggggacactgaccgctccccgataccggtgacctgcattggttctgat
ccaaatttagcccatcagctgcagggagctcctcaacaagcgcttttggaagacatggag
gacttccaggacgctgttagcagtcaagtattatcgcactctgccagagctggcgcctca
gcaaccacctcatcttcccatgatgctgccgctgtgcccgtcacagcggcggccacacaa
gagcgtgcagatgtggtacctaacgggtaccacttcacctttggggtaaattctgcatca
aacagcagaggaacaggaagcctcagggagagagaggatgaggattggtgctaa
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