Syngnathus scovelli (Gulf pipefish): 125979246
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Entry
125979246 CDS
T08785
Name
(RefSeq) mediator of RNA polymerase II transcription subunit 13-like isoform X1
KO
K15164
mediator of RNA polymerase II transcription subunit 13
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sscv03021
]
125979246
Transcription machinery [BR:
sscv03021
]
Eukaryotic type
RNA polymerase II system
Mediator complex
CDK-module
125979246
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Med13_C
MID_MedPIWI
Med13_N
Motif
Other DBs
NCBI-GeneID:
125979246
NCBI-ProteinID:
XP_049593204
LinkDB
All DBs
Position
13:complement(11276674..11332090)
Genome browser
AA seq
2139 aa
AA seq
DB search
MTTTTNWVANGASLEDCHSNIFSLADLTGIKWRCYNFRGGGEYGPVISAPAQDDPVLRSF
MRCVQANLLCVWRRKIKPDAKELWIFWWGDEPNLSDVIHHELEVAEEGLWECGLSYECRT
LLFKAVHNLLERCLMDKGFVRVGKWFFKPHQLQEKSLGSSEHLSCSFSFFLHGESNVCTS
VEIAQHQPAYHITEQHIHLAHTSVAPIQVILSPYGLSGTLTGQAYKMSDPAARKLMEEWS
YFYPMVLKRKAGSGEENVEPADDRNAHAAVEVVVGGVRMTYPAAFVLIGQGQLPAEPPPP
APAAQGLLAREQNHCSVPLTPPTSPEQPCSADSGFVTSASSVPTPDSNLGVSNLSPKHSG
KKLTCQVVHQAWRECYLSQPQHTLKQPADVTPKKEVPNGVTTWDFNDVGARAPCSCSRVK
QQKLTTTANISNPQIGANPSSGSSLYASSIPKHKTSDKTEKADKQSKRPAMIPFHHRVSV
TQETSLEQDSPGGAQLSGLVALDPPMEPMATLASCKYPKPLSNGRKAPESLLLSPMSPLP
PTLSPHPRVQDPEVLEGPLDMHVCQEAAAGMGLMTSETAMYIALLKQRENGAGWWRGFRT
PRTDKMDFRPPEVLADKLEEGKTEAIPEGTALKRLYTQTQKRFKISDERLRDHVQTLGLL
QQPVVEALREPGEDPYDFKEGDIEYTFSTSKRLKSQGRESSKRAKSEEITSNGNLPDGKD
AMSIFNSAPKSDESSPDDAAAKANPSLTREKDLVVNISDLDNIFDEDEEELGTVYPNQHS
TKVTVSTEDRPLSKEGRAAVPYPSTVADLQRMFPTPPSLEQHPAFSPIMTYRDTPSQEPP
SAPSGAPDHLVPLAVSQLPEFRMDLEEGMASPWQEDFKVSSWEKLIRAKWSCSVQHFQSL
SSCPPYVQTQVVSSMFAPLSCLPSQSLPPLKIPEQCYYRPSWALLPKMEHIPTAMHAQNS
GFVRDGYTNIPSVSALTEQDYNQMSGTTASVSTTVGILPSPATPRFSVPTPRTPRTPRGM
NPASSGQGSVKQDGTELSSPASTPSTSLPLSSVEPLARPRPCLPESHSLYAILLLSDSVL
NVFKDRNFDSCCICACNMNVKGADVGVYIPDSTCEDQYRCMCGFSAIVNRQLAHGTGLFL
EDELDIYGRSSEIGRAAERRLALGRREPTMGDPRAKRPQDAAPASPSLMVLLQEQCSQPI
SSLASLHLPHGYSSYSRKGALLQSWLSEKQWADGSDACVECYNALEQGLQYVDNSTGGKV
DPAVVRSTALHPWPHTNVADMSMLSSQDMVRLLLSLQPFLQDAIQKKRTGRTWDNIQHVQ
GPLTWQQFHKMAGRGSYGSEESPEPLPIPTVLLGYDRERDFLALSPLALPFWEKLLLEPY
GGQRDAAYVVLCPNSPPLLAAARAFFQELSAVYETCRLGKHRPLAKVSRDGIVRVGEEVE
SERLEDLDVDQWLSGPWAGEQHMDNLSKLKLYAYACKLQLGPQLSVLPLDSTLLLPPRIQ
ASASSAQPASSGQPQTWATDAEAASGAPGAGGSATPAAAPSGQTAESTPGGSSESKGPLS
SALAANIPAENSDATTEQSRIGIPTGPDSTDSRTNPPAIVVYVVDAFLSPTGMRSEGGEE
EEGDEVEAESVWLLGLLRCYTEMLQTLPETVRPALVLQVVPCQYLLQPASGESHLYLQHL
RSLAFSCYSQCRRLRPQHTHIKSLTGFGPVSTVTSVLKSPDHPSPVHLYSPPFILGPTRP
KQPEQGEIWAEVPPRYNVLFVGYCLSHDQRWILVSCTDQQGELLETCIINVDVPNRARRP
KVSARKMGLQKLWEWCVGIIQMTSLAWRIVIGRLGRLGHGELKDWSSLLGEHSLHSIGRQ
LREACRMCGISAADTPSILSACLVAMEPQGSLVVMPDAVTMGSVFGRSTALNLQTSQLNT
PQDASCTHILVFPTSATTQLAPSSYPTEDNNDDMFDLPFPDELENDIGHDMMLITGNLHP
SPNTSPVPSPGSPSGMGSHFQHTRSQGERLLSRDNPPEELKQQPLALGYYVSTAQAGGLP
HWFWAPYPQAENQCPLFLKASLHHHISMVQSDELVADKTKRTPHPLDSKTTSDVLRFVLE
QYNALSWLTCTPATQDRQSCLPVHLAVLVQMYNAILNML
NT seq
6420 nt
NT seq
+upstream
nt +downstream
nt
atgacgacaacgacgaactgggtggcgaacggggcaagccttgaggactgccactccaac
atcttctccctggcggatttgacggggatcaaatggcgctgctacaacttccgtggcggc
ggcgagtacggtccggtgatctcggcgccggcccaggacgacccggtcctgcgcagcttc
atgcgctgcgtgcaggccaacctgttgtgcgtatggcgccgcaagatcaagcccgatgcc
aaggagctgtggatcttctggtggggcgatgagcccaacctgtcagatgtcatccatcat
gagctggaagtggccgaggaggggctgtgggagtgcggactgtcctacgagtgcaggacc
ctgctgtttaaggccgtacacaacctgctggaaagatgtctcatggacaaaggattcgtg
agagtcggcaagtggttcttcaagccgcaccaactgcaggaaaagtctctgggcagcagt
gagcacctgtcgtgttccttctccttcttcctgcacggggagagcaacgtgtgcaccagc
gtggagatcgcccagcaccagccggcgtatcacatcacagaacagcacattcacctcgca
cacacctccgtcgcgccaatacaagtgatcctgagcccatacggtctgagcggtactctg
acgggtcaagcctataaaatgagcgacccggcagcacgcaaactgatggaggaatggagc
tacttttaccccatggtactgaagcggaaggcgggaagcggcgaggagaacgtcgagccg
gccgacgatcgcaacgctcacgcggccgtggaggtggtcgtcggtggagtaaggatgacc
tacccagctgcttttgtgctgattggccagggccagctgccggcggagccacctccacct
gctcctgcagctcagggcctcctcgccagagagcagaaccactgcagcgtgccgctcacg
ccgccgacatcgccggagcagccttgctcggcggacagtggattcgtgacctcggcctcg
agtgtcccaacgccagacagcaatctgggggtcagcaacctcagcccaaagcattctggg
aaaaagctgacttgtcaggtggtccaccaagcttggagggagtgctacctcagccagcct
cagcacacacttaagcagccagctgacgtgacgcccaagaaggaagtgccaaacggagtc
accacgtgggatttcaatgacgtcggcgcgcgagcgccatgcagctgctcgagggtgaag
cagcagaagttgacaaccaccgcaaacatctccaacccccagatcggcgccaatccgtcc
tccggctcgtcattatacgcgtcttccatacccaaacataagacgagcgataagactgaa
aaggctgacaaacaatccaagaggccggccatgatcccctttcaccaccgtgtgtctgtc
acccaagagacctctctggagcaggactcccctgggggggcccagctcagtggtctggta
gccctggatccacccatggagcctatggccactctggcaagctgcaagtatcccaaaccg
ctctccaatggcaggaaagccccggagtcccttctcttgtcgccaatgtctccgctccct
cctacacttagtccacatcctcgggttcaggacccagaagtactggaagggcccctggac
atgcacgtatgtcaggaggcagcggcgggcatgggcttgatgaccagtgagacggcaatg
tacatagccctgctgaagcagagagagaacggggccggctggtggagaggcttccggact
cccaggactgataagatggatttcagacctccagaggtcttggctgataaactagaggaa
gggaagaccgaggcgatccccgagggaactgctctaaagagactttacacacagacgcaa
aagagatttaaaatctccgacgagagattgcgggaccacgtccagacgctgggcctgctc
cagcagccggtcgtggaggctctgcgcgagccaggggaagacccttacgacttcaaggaa
ggtgacatcgagtacaccttctccacttccaagagattaaagagtcaagggcgagaatcc
agcaagagagccaagagtgaagaaatcaccagcaatggcaacctgccagatggaaaagat
gcgatgtccattttcaactctgctcctaaatcagacgagtccagtccggacgatgccgcc
gccaaagccaatccttctctgactcgagaaaaagacctagtggtgaacatttcggatctg
gacaacatatttgatgaagatgaggaggagcttgggacggtttaccccaaccagcactca
accaaagtcacagtatccaccgaagatcgtcctctgagtaaagaaggcagagcggcagtt
ccttatccatcgacagtagcagacctgcaacgcatgttccccacgccaccttcattggag
cagcacccggccttctcgcccatcatgacgtaccgcgacacgcccagccaggagcccccc
tccgctcccagcggagcgccggatcacctcgtgccgctcgccgtcagccagctgcctgaa
ttcaggatggatctggaggaaggcatggctagtccttggcaagaagacttcaaggttagt
agttgggaaaagctgattcgagcaaaatggagttgctctgttcaacatttccaaagcctg
tcttcatgtcccccctatgtccagacacaagtggtctcctccatgtttgcaccactttcc
tgcctacccagtcagagtttaccaccgctcaagattcccgagcagtgctactaccgcccg
tcttgggcgctcctgcccaaaatggagcacatcccaaccgccatgcacgctcagaacagc
ggtttcgtcagggatggatacacaaatatcccaagcgtcagcgctctgacggaacaggac
tacaaccagatgagcggcaccacggcttccgtcagcaccaccgtgggcatcctgccctcc
ccggccacgcctcgtttctccgtgcccaccccgcgcacccctcgcacgccgcggggcatg
aaccccgccagctccggccaaggttccgtgaagcaggacggcacggagctgagctcgccc
gcttcgaccccttccaccagcctgcctcttagctccgtggagcccctggcccgacctcga
ccttgcctccccgagagccacagcctgtacgccattctgcttctgtccgactcggtcctc
aacgtcttcaaggaccgcaactttgacagctgctgcatctgtgcctgcaacatgaacgtg
aagggggcggacgtcggggtgtacatccccgattccacctgcgaggaccagtaccgctgc
atgtgcggcttcagcgccatcgtcaacaggcagctggcccacggcaccggcctcttcctg
gaagacgagctggatatttacggccgctcctccgagatcggtcgggccgccgagaggagg
ctggctctcggccggcgggagccaacgatgggcgaccccagagccaaacggcctcaggat
gcggcgcccgcctcgccctcgctcatggtcctgcttcaggagcagtgctcgcagcccatt
tcctcccttgcctcgctgcaccttccccacggctactccagctattcccgcaagggagcg
ctgctccaaagttggctgtcggagaagcagtgggcggacgggagcgacgcctgtgtggag
tgttacaatgccttggagcaggggctgcagtatgtggacaactccacggggggcaaagtg
gatccagctgttgtcagaagtacagctctccatccttggcctcacaccaatgtggcggac
atgagcatgttgtcgtcccaggacatggtgcgcttgctgctgtccttgcaaccgttcctg
caagacgccatccagaagaaaagaaccgggcggacttgggataacattcaacacgttcag
ggcccgctcacctggcagcagttccataagatggcgggcaggggctcgtatggttctgag
gagtccccagagcccttgcccatccccaccgtcctgcttggctatgatcgagaacgggac
ttcctggccctgtcccctctggccttgcccttctgggagaagctcttgctggagccttac
gggggtcaacgagatgcggcgtatgtggtgctctgtcccaatagccctccgctgttggcc
gccgcccgagctttcttccaggagctaagcgctgtttacgagacatgtcgtctcggaaag
caccgtcctctagccaaggtgtcccgggatgggatcgtccgcgtgggggaggaggtggag
tccgaaaggctggaggatctggatgtggaccagtggttgagcggtccctgggctggagag
caacacatggacaacctcagcaaactgaaactttatgcctatgcctgtaaactgcaacta
ggaccccagttgtcagtcctgcctctggacagcacgcttctcttgccacccagaatccaa
gcatccgcctcttcagcgcagcccgcctcctccggccagcctcaaacatgggcaaccgat
gcagaagcagcttccggggctcccggggctggaggctcagccactccagccgcagcacct
tctggccagacggcggagtcgacgcctgggggctccagcgagtccaaaggccccttgagt
agcgcactagcagccaacataccagcagagaactctgacgccaccactgagcagtcccga
atcggcatcccgaccggcccagactccacggacagccgcaccaacccacccgccatcgtc
gtttacgtcgtggacgctttccttagcccgacaggcatgcggagcgaaggaggggaggaa
gaggaaggtgacgaagtcgaggcagagagcgtgtggctgctcgggcttcttcgctgctac
acggaaatgctgcagactctgcccgagaccgttagacctgcactcgttctccaggtggtg
ccatgccagtacctcctgcagcctgccagcggggagagccacttgtacctgcagcacttg
cgttcgctggccttctcatgctactcacaatgtagacgcctgcggccccagcacacgcac
atcaagtccctgaccggttttggcccagtttccaccgtcacgtcggtcctcaagagccca
gatcatcccagcccagtgcacttgtactcgccccccttcatcctcgggcccacccggccc
aagcagccagaacaaggagagatttgggccgaagtccctcccaggtacaacgtgctcttt
gtggggtactgtctgtcacatgaccagcgctggatcctggtgtcgtgcacggaccagcaa
ggagagctgctcgagacgtgcatcatcaacgtggacgttcccaacagggcacggcgcccg
aaggtgtccgctcggaagatgggtctgcagaaactgtgggagtggtgcgtcggcatcatc
cagatgacctcattggcgtggaggattgtgattggtcggttagggagactgggccacggt
gaacttaaagactggagctcgctcctcggggagcactcgttgcattcgatagggcgccag
ctcagggaggcgtgtcgcatgtgcggcatctcggcggcggacaccccctccatcctaagt
gcctgcctggtagccatggagccgcagggctccctcgtggtcatgcccgacgccgtgacg
atgggctccgtgttcggccgcagcaccgccttgaacctgcagacgtcgcagctcaacacg
cctcaggatgcctcgtgcacacacatcctcgtcttcccgacgtccgccaccacccagctg
gcgccgagctcctaccccactgaggacaataacgacgacatgttcgacttgccctttcct
gacgaactggagaacgacattggccatgacatgatgctgatcacgggtaacctccatcct
tcgcccaacacctcccctgtgccgtcaccgggctctccatccggaatgggatcccacttt
caacacaccaggagccaaggggagcgcttactctccagagacaatcctccggaagagctg
aagcagcagccgctggctctgggctactacgtctccacagcgcaagcgggtggactcccg
cattggttctgggccccctaccctcaagctgagaaccaatgtcctctcttcctcaaggcc
tcgctccaccaccacatctccatggtccagtccgatgagctggtggcagacaagacaaag
aggacccctcacccgctggactcaaaaaccacctcagatgtgctccgatttgtgttggag
cagtacaatgcactgtcctggctgacctgcacgcctgccacccaggaccggcagtcttgc
ctccccgtccacttggccgtgctggtccagatgtacaacgccatcctcaacatgctatag
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integrated database retrieval system
