Syngnathus scovelli (Gulf pipefish): 125979354
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Entry
125979354 CDS
T08785
Name
(RefSeq) lys-63-specific deubiquitinase BRCC36
KO
K11864
BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03440
Homologous recombination
sscv04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
125979354
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
125979354
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
sscv01002
]
125979354
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sscv04121
]
125979354
03036 Chromosome and associated proteins [BR:
sscv03036
]
125979354
03400 DNA repair and recombination proteins [BR:
sscv03400
]
125979354
Peptidases and inhibitors [BR:
sscv01002
]
Metallo peptidases
Family M67
125979354
Ubiquitin system [BR:
sscv04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
125979354
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
125979354
BRISC complex
125979354
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
BRISC complex
125979354
DNA repair and recombination proteins [BR:
sscv03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
125979354
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCC36_C
JAB
Prok-JAB
UPF0172
REP_ORF2-G2P
Motif
Other DBs
NCBI-GeneID:
125979354
NCBI-ProteinID:
XP_049593432
LinkDB
All DBs
Position
13:7928037..7929781
Genome browser
AA seq
260 aa
AA seq
DB search
MAVSAVHLESDAFLVCMNHALSTEKEEVMGLCIGEVEPTRVVHIHSVIILRRSDKRKDRV
EISPEQLSAASTEAERLADMTGKPMRVVGWYHSHPHITVWPSHVDVRTQAMYQMLDQGFV
GLIFSCFIEDKNTKTGRVLYTCFQSTQAQKGSDYERVEIPIHVVPRETIGKVCLESAVEL
PRILCQEEQDTYRKIHSLAHLDPVTKIHNGSVFTKNLCSQMSAVSGPLLQWLEDRLEQNK
QIIAELEREKERLTQELSAH
NT seq
783 nt
NT seq
+upstream
nt +downstream
nt
atggcagtcagtgcggttcatctagagtcggacgccttcctggtgtgtatgaatcacgcg
ttgagcacagagaaagaagaagtgatgggtttgtgtatcggagaggtagaacccaccagg
gtcgtccacattcactccgtcatcatcctccgccggtcggacaagaggaaggaccgggtg
gagatctccccggagcagctgtctgccgcctccacggaggccgagaggctggccgacatg
acaggcaagccgatgcgggtggttggctggtaccactcccatccacacatcaccgtgtgg
ccctcgcacgtcgacgtccgaactcaggcaatgtaccaaatgctggatcagggcttcgtg
ggcctcatcttctcctgcttcattgaggacaaaaacaccaagacgggccgcgttctgtac
acctgcttccagtcgacccaggcccaaaagggttctgactacgagcgtgtggaaatcccg
attcacgttgtcccgcgcgagaccatcggtaaagtgtgcctggagtcggccgtggagctc
ccgcggattctgtgtcaagaggagcaggatacataccggaaaatccacagcctggcccac
ttggaccctgtcaccaagatccacaacgggtctgtattcaccaagaacttgtgcagccag
atgtcagcagtgagcggaccgctgctacagtggctggaggatcgcctggagcagaacaag
cagatcatcgcggagctggagcgggagaaggagagactgacgcaggagctgagtgcccac
tga
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