Syngnathus scovelli (Gulf pipefish): 125979361
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Entry
125979361 CDS
T08785
Symbol
ttc28
Name
(RefSeq) tetratricopeptide repeat protein 28 isoform X1
KO
K24936
tetratricopeptide repeat protein 28
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
sscv03037
]
125979361 (ttc28)
Cilium and associated proteins [BR:
sscv03037
]
Motile cilia and associated proteins
Other motile cilia associated proteins
125979361 (ttc28)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_12
TPR_7
TPR_1
TPR_2
CHAT
TPR_10
TPR_8
TPR_MalT
Rapsyn_N
TPR_17
RPN7
TPR_NPHP3
TPR_16
TPR_14
TPR_11
TPR_19
Foie-gras_1
DUF3856
ARM_TT21
Motif
Other DBs
NCBI-GeneID:
125979361
NCBI-ProteinID:
XP_049593439
LinkDB
All DBs
Position
13:15037213..15049137
Genome browser
AA seq
2265 aa
AA seq
DB search
MQEGAGPAHDSGPGKGHATLDGICGCERACQQGDYALAARLCTEALAADPLNCVLYSIRS
AAHLSLGRYRQALHDANKARDINPKWTQAYFRQAVALQHLGRHGDALAAFASGLARDPKS
LQLLTAMTEAAMKSPLRDSLEPAYRQLQSMKLERSPFMVVSLVGQELLTRGLHAAAADSL
EAALRIGTCSLKMRGSVFSALGAAYWSLGRAEKSLAYMRRDLDVARTLGDQRGECRAHGN
LGSALFSKGRYREALANHRQQLILAMKLKHKEAASQALRGLGHVYTAVGDYPNALASHKQ
CVALAKQNGCRLSEARQLGDTGAVYTAMGDVAGALRCHQEHLDIAKSLGNRREEARAYSN
LGSAYHAQRDYDKAVTYHSRVLKLARELGDDGGSTVEMRALAGLGHAARCVQDLDAALRY
HRRQLEIAEELGDPGARGRASSNLGIVHQMRGDYHLALKFHKDDLLCAQEVGDYAAQGRA
YGNMGNAYHALGLYEQAAGFHRQELNISLEVNDRASQASTHGNLAAAYQALGAPDRALQH
YLRHLSVSRELGDVQSQARALANLGNFHCCRGHYEEALPYYRQYLLLAPGLGDPEAQGKV
CHNLAYAHFCLGHYQDAVRYYQQDLALAMDLQDKLAQAKAYCNLGLAHKALGEFSRAQEC
HNHLLQIAKALDNTKAIFRALGNLGDVSICQDDLQGAAGFYRQQLSLAHQFSDQKMEADA
YSALGSVHRLLGQLDTSLSFHSRELTLRKDLGDPGGECRALARLAAVHADLGDGDTSLQC
YEAQLGLARRRLRDTRQEAQVLGNMAIAEMNAGRFEEAVGFLEQQLAALRRSGSGDAVPH
RGKVYGNMAKCYVALGDFDEAVRCYHEALTVARSLERVQDQAEAYRGLADAHRSAGNLQQ
ALVCLEKRLVAAHQLGGPVGGEARAYGDLGALHGQMGNYERALSSLERGLGIARSAGDKS
LEAEASDELGRVYQLMGDYETALQWHRRSLDMAERAGCLRGQTRASANLGVTYEALGDYQ
QALLLQEQHLSMAAQTSDLLSKSRAYGGLGRIHHALGNATQAVAYLREGLRLAERSAGRE
DEAEMRHRLGLSLWAAENLAEARRQLHRASLLFESIGRETLHGADRKHALLDLQTDTYQA
LQRVLVSLGHVEEALAVAERARTQTFAHLPVGSDRRAPVTVERILETVDSQKATVLYFSL
ARGFLHSWLLAPGSGVVEFNQARLGADDAPEFRDGSSLREGGRRSLERYVCAAREVLGVD
GNLSRMNVGSETESQAGEAPERRFNDELDGYLRVASADNVSKSAGVSPAEDGSSSPCRRL
GVDASPLAALYDLLIAPMEAALLHAGGQAGPRRQLVLVLEGDLYLVPFALLKSSSSAEFL
YQMFALLCVPSLASLRASGPPAPPCRLAGSGLAVVGAPGPWRGRSWAPPPPSARDEALCL
GERLGCVQLAHATKERALAALAQAQCVHFATHVSCEPAALVLDPGGEEEEGGRCAMAPSA
EGTKACLGEDACESRPPLRDFLLTAEEILELNLSVKLVVLRSYPESGVRLTRDGLSGLTG
AFLRAGVRCVCVSLWATPPPAAKLFMQSFYSALLEGAAASAALAGAMSTLRDSKDFADPF
NWAGYLLMGGDVRLNGPELALRRALAEVLCHADRARDTLRVLLHLVEKSLQRIHSGHAKL
LYTSQQSVDDKVGGVPGWRPLLAAVGFRLDAGGSGRPAAVFFPTSDPGERLQRCSLTMQA
LLGLSAAAFEALCKLVSAPQAGEPLVRELHQVLLLQLQSRDGESDRSPAAVLVSLSVRAW
RLPGCHEFLAALGFDLCQVGQEDVLLKTGKRASGRVMALALRSLLALFDSADVPERVGTY
GSSSLESLSSSPPTPQPASFPASPPRPSLCPDAPSGDAISVYSLSSLTSSLGFWPRPEPA
GSDAVGRCSRAQEGAATPRRSRRLANLGKGEAGDEDHRGYAIISSEPLRPEDRCATVKEP
PPPPNVPAKPPHTQEVSSPRRSKAKMSGREEAGGGVPTGQLDPEELTRKILEETRVHMRA
VEILQRTPGRRSLSTPVTPILSRGARAFQPSETSAFSRPPSRTSPASAPLGPLSPRPPCR
SSSLQKLAPPSSPKYLAGRASSLHLKAAGRDCHDKTSPDTESRVKPSTGSKCHPKAVNSE
SHPKFSLAPPPSSTTAVPRFKSFKAARQHEGASPAGLLPAKKMSTVKKDVLGLLDLSSRH
KSSETSDRLPSADSKAPSASKASKRTKFPSGYKFLAGHFFPSSKC
NT seq
6798 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaaggggcggggccagcacatgactcaggtccaggcaaaggccacgccacgttg
gatggcatctgtggctgtgagcgggcgtgccagcagggcgactatgccctggcggcacgc
ctgtgcacggaggccctggccgccgaccccctcaactgcgtgctctacagcatccgctcg
gcggcccacctcagcttgggccgctaccgccaggccctgcatgatgccaacaaggcccga
gacatcaacccaaaatggacgcaggcctacttccgccaggcggtggcgctgcagcacctg
ggtcgccacggagacgccctggcggcctttgcctcgggcctggctcgggaccccaagagt
ctgcagcttctgacggccatgacggaggccgccatgaagtcgcccctccgagattctctg
gagcccgcctaccggcagctgcaaagcatgaagctggagcgcagccccttcatggtggtg
tcgctggtcggacaggagctgctgacgcgcggcctgcacgccgccgccgccgactcgttg
gaagcggcgctgcggatcggcacgtgctcgctgaagatgcgcggttccgtcttctcggcg
ctgggcgcggcttactggtcgctgggccgcgcggagaagagcctggcctacatgcgacgg
gacctggacgtggcccgcaccttaggtgaccaaaggggcgaatgccgcgcccacggcaac
cttggctccgccctcttctctaaaggccgttaccgagaggcgctggccaatcacaggcag
caactgattctggccatgaagctgaagcacaaagaggcagcgtcccaagctctccgaggg
ttgggccacgtgtacacggccgtcggcgactaccccaatgcgctagccagccacaagcag
tgcgtggcgctggccaagcaaaatggctgccggctctccgaggcccggcagctgggcgac
acgggcgctgtgtacaccgccatgggagacgtcgccggcgccctgcggtgccaccaggaa
cacttggacatcgccaagagtctggggaaccggcgcgaggaggctcgagcttacagcaac
ctgggcagcgcctaccacgctcagcgcgactacgacaaagccgtgacgtaccacagccga
gttctcaagctggcccgggagctcggagacgacggcggcagcacggtggagatgagggcc
ttggccggcctgggacacgccgcccgatgcgtgcaggacctggacgcagcgctgcgctat
caccggcgtcaactggaaatcgccgaggagctcggggacccgggggctcgaggcagagcc
tcttccaacctgggcatcgtccaccagatgcgcggtgactaccaccttgccctgaagttc
cacaaagatgacctgctgtgcgcccaggaagtgggggactacgccgcccagggccgggcc
tacggcaacatgggcaacgcctaccacgccctgggcctctacgagcaagcggccggcttc
caccgacaagagctgaacatctctctggaggtgaacgaccgggcgtcccaggcctccacg
cacggcaacctggcggcggcctaccaggcgctgggcgctccggaccgggccctccaacac
tacctgcgccacttgagcgtctcaagggagctgggcgacgttcagagccaagccagagcg
ttagcaaacttgggcaacttccattgctgccgaggccactacgaggaggccttgccgtac
taccgccagtacttgcttctggctcccggccttggggatccggaggcccagggcaaagtt
tgccacaacctcgcctacgcccacttctgcctgggacactaccaagatgccgtcagatac
taccagcaagatctggccttggccatggaccttcaggacaagctggcccaggccaaagcc
tactgtaacctgggcctggcccacaaagccttgggggagttcagcagagcgcaggagtgt
cacaaccatctgctccagatcgcaaaagctttggacaacacaaaggcaatcttcagggct
ttgggcaacctcggagatgtcagcatttgtcaggacgatcttcagggagccgccggcttc
taccgacagcagttatcgttagctcaccagttcagcgatcagaagatggaggcggacgcc
tactcggctctcggatcagtgcacaggctgcttggccagctggacacgtccttgtccttc
cacagccgggagctgaccctgcgcaaggatctgggtgaccccggcggggagtgccgcgct
ttggctcgcctggccgccgttcacgccgacctgggagacggcgacaccagcctgcagtgc
tacgaggctcagctgggcctggcgcggcggcggctgcgcgacacccgccaggaggcccag
gtcctcggaaacatggccatcgccgagatgaacgcgggccgctttgaggaagccgtcggc
ttcttggagcagcagctggccgccctgcggcgctcgggttccggagacgccgtcccgcat
cgggggaaggtttacgggaacatggccaaatgctacgtcgccctgggagactttgacgag
gccgtgcggtgctaccacgaggccctgacggtggctcggagtctggagcgagttcaggac
caggcggaagcctacaggggactcgccgacgctcacaggtcggcgggcaacctgcagcaa
gctttggtgtgcttggagaagaggctggtggcagctcaccagctgggcgggccggtgggt
ggcgaggcgcgggcgtacggcgacctgggcgccctgcacggccagatgggcaactatgag
cgggccttgtccagcctggagcgtggactcggcatcgctcgctcggccggggacaaatcc
ctggaagcggaggccagcgatgagctgggccgagtttaccaactgatgggtgactacgag
acggcgctgcagtggcaccgacgatctctggacatggcggagcgggcgggatgcctcagg
ggccaaacgcgggcctccgccaacctgggagtgacctacgaggctctgggcgactaccag
caggctctgcttctccaggagcagcacctcagcatggcggcgcagaccagcgacttgctg
tccaaaagccgggcctacggcggcctggggaggatccaccacgcgctgggcaacgccacg
caggctgtcgcgtacctccgggaaggccttcgcctggccgagcggtcagccggcagagaa
gacgaggccgagatgcgccaccgcctcggcttgtctctgtgggctgccgagaacctggcg
gaggcccggcggcagcttcacagagcctcgcttctctttgagagcatcggccgcgagacg
ctgcacggcgccgaccgcaagcacgccctcttagacctgcagacggacacgtaccaggct
ctccagagggtcctcgtcagcctgggccacgtggaggaggcgctggccgtagcggagcga
gcccgaacgcagaccttcgcccacctaccggtgggctcggaccggcgtgccccggtcacg
gtggagcgcatcctggagacggtcgacagccagaaggccacggtgctctacttctcgctg
gcgagaggattcctgcacagctggctgctggctcccggctcaggcgtcgtcgagttcaac
caggcccgtctcggagccgacgacgcgccagagttccgagatggctccagcttgcgggag
ggcggccggcgctctctggagcggtatgtctgcgccgccagagaggttctgggagttgac
ggaaacctcagcaggatgaacgtgggcagcgagacagagagccaagccggagaggccccc
gagcgacgctttaacgacgagctggacggctacctgcgcgtggcgtccgccgacaacgtc
tccaaaagcgccggcgtttctccggccgaggacggctcgtcttctccttgccgccgcctc
ggcgtggacgcctctcctctcgccgccctctacgacttgctcatcgcgccgatggaagcg
gccctgctgcacgccggtggtcaggcgggtccacgccggcaactggttctggtcctggag
ggtgacttgtacctggtgcccttcgccttgctcaaaagcagctcgtccgccgagttcctg
taccagatgtttgctctgctttgcgtgccgtcgttagccagcctgcgagcttccgggccg
cctgctccgccctgccggctcgccggctcgggactggccgtggtgggagcgcctggcccg
tggcggggccgctcgtgggctccgccgccgccgtcggcccgggacgaggctctgtgtcta
ggcgagcgtctgggctgcgtccagctcgcccacgccaccaaggagcgcgccctcgccgcc
ctggcgcaggcgcagtgcgttcactttgccactcacgtctcctgtgagccggccgccctg
gtgctggaccccggcggtgaggaggaagaggggggccggtgcgcgatggcgccgagcgcg
gaaggaacgaaagcttgcctcggcgaggatgcgtgcgagagccgtcctccgcttcgagac
ttcctcctcaccgcggaggagatcttggagctcaacctgagtgtgaagctggtggtcctc
aggtcctaccccgagtccggcgtgcggctgacgcgcgacggcttgtcgggtctgaccggg
gcctttctgcgggcgggcgtccgatgcgtgtgcgtgtccctgtgggccacgccgccgccc
gctgccaagctcttcatgcagagcttctactcggcgctgctcgagggcgccgcggccagc
gccgcgctggccggcgccatgagtacgctccgcgacagcaaggactttgcggaccccttc
aactgggcaggctacctgctgatgggcggcgacgtccggctcaacgggcccgagttggcg
ctgcgacgggccttggcggaggttctctgccacgccgaccgggccagggacaccttgagg
gttcttctgcacctggtggagaaatctttgcagcgcatccacagcggccacgccaagctc
ctgtacacgtcgcagcagagcgtagacgataaggtcggcggcgtgcccgggtggcgcccc
ttgttggcggcggtgggtttccgtctggacgcgggcggttccggccgccccgccgccgtc
ttcttccccacgtcggaccccggagaacggctgcagcgctgcagtctcaccatgcaagcc
ctgctcggtctaagcgcggcagctttcgaggctctttgcaaactggtgtcggcgccccaa
gcgggagagccgctggtacgcgagctccatcaggtgctgctgctgcagctgcagtcacgt
gacggcgagagcgaccgatcgccggccgccgtcttagtgtcgctcagcgtgcgtgcgtgg
aggcttccgggatgccacgagttcctggcggccctcgggttcgacctgtgccaggtgggt
caggaggacgttctgctgaagacgggcaagcgggccagcgggcgagtcatggctttggcc
ctccgctcactcctggcgctttttgactcggcagacgttcccgagcgtgtcggcacgtac
gggtcgtcctcgttggagtctctgtcgtcttctccgccgacgcctcagcccgcgtctttt
cccgcctcgccgcctcgtccttccctctgcccggacgcgccgagcggcgacgccatctcc
gtctacagcctcagctcgctcacctcctctctcgggttctggccgcgccccgagcccgcg
ggaagcgatgcggtcggccggtgctcgcgagcgcaggagggggcggcgacgcctcgccgc
tccaggcgactggccaatctgggtaaaggggaggcgggcgacgaggaccaccggggctac
gccatcatcagcagcgagcctctgaggccagaggaccgttgcgccacggtcaaagagccg
ccgccgccgccaaacgttccggccaagccgccacacacgcaggaagtctcgtctcctcgg
aggagcaaagcgaagatgagcggccgcgaggaggcgggcggcggcgtacccacgggacag
ctggaccccgaggagctgactcgcaagatcctggaggagacccgggtccacatgcgtgcc
gtggagatcctgcagcggacccctgggcggcgttctctctcgacacccgtcactcccatc
ctgagcaggggcgcacgcgccttccagccgtccgagaccagcgccttcagcagacccccg
agcaggacgagtccggcttcggcgccgctcggtcctctctctcccagaccgccgtgccgc
tcctcttccctgcagaagctggctccaccctcatcccccaaatatctggctggcagagcg
tcttcacttcacctcaaagcagctggcagagattgtcacgacaaaacttcacctgacacc
gagtcccgggtcaaaccttcaactgggagcaagtgtcatccaaaagctgttaacagcgag
tcccaccccaaattctccctggcgccacccccctcctccaccaccgcggtccctcgcttc
aaaagcttcaaggcggcccgccaacacgaaggcgcatcccccgccggccttcttccggca
aagaaaatgagcacagtgaagaaagacgttctgggtttgctggacctgtcgtcgcgacat
aagtccagcgagacttccgaccgtctccccagtgcggacagcaaagcgccttccgcctcc
aaagcttccaaacgcactaaatttccttctggctacaaatttctagcagggcattttttc
ccttcttcgaagtgttga
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