Syngnathus scovelli (Gulf pipefish): 125979373
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Entry
125979373 CDS
T08785
Symbol
wdr36
Name
(RefSeq) WD repeat-containing protein 36
KO
K14554
U3 small nucleolar RNA-associated protein 21
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
125979373 (wdr36)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sscv03009
]
125979373 (wdr36)
Ribosome biogenesis [BR:
sscv03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
125979373 (wdr36)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Utp21
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WDR55
WD40
WD40_CDC20-Fz
Beta-prop_WDR90_POC16_2nd
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_IFT140_1st
Beta-prop_EML
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_VPS8
Beta-prop_SCAP
Beta-prop_WDR19_1st
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_HPS5
Beta-prop_RIG_1st
WD40_like
Motif
Other DBs
NCBI-GeneID:
125979373
NCBI-ProteinID:
XP_049593477
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Position
13:15281514..15286852
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AA seq
886 aa
AA seq
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MAGGGGSSLFSGFRLLGLYCNHVPHVLRYHRKHREFYLVTSVGKCLHTYNVNRLGIVAIS
NSLQDDITCLAADRMLTFAAAGSLVLAFAKNKEVVMRYRGHKQEVRLLLPFGDQLISVDG
GGLLVVWDVQSGEVYTQLHFEPVAFEVSALMHPSTYLNKVLLGSCQGPLQLWNLKSSKLL
YTFAGWSAGVTVLQQSPAVDVVGVGTATGRIVIHNIRLDETLMAFTQDWGPITSLAFRTD
GPPTLAAGSPQGHLALWDLERRQLAAQLRHAHKTAVNASFLHGEPLLITTAADNAIKVWI
LDQEGGGARLLRNRQGHSAPPTTIRHYDGKNILSAGQDGTLQSFSTVHERLNKNLGHGSL
NKKKEQKKKKGLSYEELRLPAVTAFSCAAARRSDWDGIVACHRGRLATTTWSYQRCTMGE
YHLRPPPGCGSGAVATAVDITSCGNFALVGSSCGRVDVYNLQSGLHRGCYGDEQKAHGGA
VRGVATDTLNQQTVTAAADGLLKFWRFKTRRLEDQIQLNTAPASMKLHRESGMLAVALDD
FTLLAVDVETRRAVRKFAGHLGSTNDMTFSPDGRWLITVGMDCAVRTWDLPSGSLVDCFL
VPVAPVGVSMSPTGDFLATSHVDSLGVCLWTNKSLRGPVGLRPLPPDYRPETETLPGAPE
AEREVTSEEEEGPDEAYASAEQLGAELVTLSQLPESRWKHLLCLDTIKRRNKAATPPVSG
PSAPFFLPTVPGLTPRFSQPQQEMQSKVSSCSLPSRGSKFSCALEAGLGAGSFTVPAELL
KSFGPSAVSVELAGLSPEGGGASGGGLFLAFIRMIESMLASGRDFDLAHAYLSLFLKLHL
RSLAQDAVAMEALVRLSSRLEAGWAELRASFNQSLCLLTYAKSALL
NT seq
2661 nt
NT seq
+upstream
nt +downstream
nt
atggcgggaggaggcggaagtagtttgttcagcggattccggcttttggggctttactgc
aaccacgtgccgcacgtgctccgctaccatcgtaaacatcgggagttctatctggtgact
tcagtcggcaaatgtttgcacacgtacaacgtcaatcgtttgggcatcgtggccatcagt
aacagcctccaggatgacatcacgtgcttggcggcagacaggatgttgactttcgccgcc
gccggctcgctggtgctggccttcgctaagaacaaagaggtggtgatgcgttaccgtgga
cacaaacaggaagtgcgcctgctgcttcctttcggcgaccagctgatctcggtcgatggc
ggcgggctcctcgttgtctgggacgttcaaagcggcgaagtgtacacgcagctgcacttt
gagcccgtcgccttcgaggtgtcggccttgatgcaccccagcacctacctgaacaaagtc
ctgctggggagttgccagggcccgttgcagctgtggaacctcaagagcagcaagttgctg
tacacgtttgccggctggtcggccggcgtcactgtgctgcagcagagcccggcggtggac
gtggtgggtgtcggcacggcgacgggccgcatcgtcattcacaacatccgactggacgag
acgctgatggccttcacgcaggactggggccccatcacgtcgctggcttttcgaacagac
gggccgcccacgctggcggcgggaagccctcaaggtcacctggccttgtgggacctggag
cgacggcagcttgcggctcagctgagacacgcccacaagacggcggtgaacgccagcttc
ctgcacggcgagccgcttctcatcaccaccgccgctgacaacgccatcaaggtctggatc
ctggaccaggaagggggaggagccaggttgctgaggaatcgccagggtcacagtgccccg
cccaccaccatccgtcattatgatgggaaaaacatcctcagcgcaggtcaagatgggaca
ctgcagtctttttctaccgtccacgagcgactgaataagaacctcggacacggctcgctc
aataagaagaaagagcagaagaagaagaagggcttgtcgtacgaagagctgcggctgccc
gctgtcaccgccttctcctgcgcggcggctcgccggtcagactgggacggcatcgtggcg
tgtcaccgtggtcgcctggcgaccaccacctggagctaccagcgctgcaccatgggggag
taccacctcaggccgccgccgggatgcggcagcggcgccgtcgccacggccgtcgacatc
acttcctgcgggaactttgccctcgtggggtcttcgtgcggccgcgtcgatgtttacaac
ctgcagtccggacttcaccgcggttgctatggagacgagcagaaagctcacggcggcgca
gtgcggggcgtggccaccgacacgctcaatcagcagactgtcaccgccgcggccgatggg
ctcctcaagttctggcgcttcaagacccgcagactggaagaccagatccagctaaatacg
gcgcccgcgagcatgaagctccacagggagagcggtatgctcgcggtggctctggatgac
ttcacgctgctggcggttgacgtggaaaccaggcgagccgtccgcaagtttgccggtcac
ctcggcagcaccaacgacatgactttcagcccggacggccgctggttgatcaccgtcggg
atggactgcgccgttcgcacatgggacctcccgtccggcagtctggtggactgcttcctg
gttcccgtggcgccggtgggcgtgtccatgtcccctaccggagacttcctggcgacttcg
cacgtggacagcctcggcgtgtgcttgtggaccaataagagcctgcgtgggcccgtgggg
ctccgcccgctgccgcccgactaccggccagagacggagactctgccgggggcgccggag
gccgagcgggaggtgacatcggaggaggaggagggacccgacgaggcgtacgcctcggcc
gagcagttgggggcggagctcgtgacgctgtcgcagctgccggagtccagatggaaacat
ctgctgtgcctggacactatcaagagaaggaacaaagcggcgacgcctcccgtgtcgggg
ccgtctgcgcctttcttcctgcccaccgtgccgggcttgacgccgcgcttctcccaaccg
cagcaggaaatgcagtccaaggtgtcgagctgcagtctgccctctcggggctcaaagttc
agttgtgctctggaggcgggtctcggcgcggggtcgttcaccgtccccgcggagctcttg
aagagtttcggtccgtctgccgtgtcggtggagctcgccgggctgtcacctgaagggggc
ggagccagcggcggcggcctctttttggccttcattcgcatgatcgagagcatgctggcc
agtgggcgggactttgatctggcgcacgcctacctgtcgctctttctcaagcttcacctg
cgctcgctggcccaggatgccgttgccatggaagcgttggtccgcctctcctcgcggctg
gaggctgggtgggcggagctccgcgcatccttcaatcagtcgctttgtttgttgacgtac
gccaagagcgcacttttgtga
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