Syngnathus scovelli (Gulf pipefish): 125979384
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Entry
125979384 CDS
T08785
Symbol
ddx55
Name
(RefSeq) ATP-dependent RNA helicase DDX55 isoform X1
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sscv03009
]
125979384 (ddx55)
Enzymes [BR:
sscv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125979384 (ddx55)
Ribosome biogenesis [BR:
sscv03009
]
Eukaryotic type
Pre-60S particles
Helicases
125979384 (ddx55)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
CTT_SPB4
Helicase_C_2
Cas3-like_C_2
SBF_like
SLFN-g3_helicase
AAA_22
Motif
Other DBs
NCBI-GeneID:
125979384
NCBI-ProteinID:
XP_049593509
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All DBs
Position
13:complement(15014588..15017901)
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AA seq
586 aa
AA seq
DB search
MENTTDGTWETLPVQLNNNILETLRELKFTHMTPVQAACIPLFMGNKDVAAEAVTGSGKT
LAFVIPVLEFLLKREEKLKKMQVGALVVTPTRELAAQISQVIGHFLQKFPQFTQMLMIGG
NNPMEDVEKFKESGANIVVATPGRLEDMFRRKGDGVDLAASVKSLDVLVLDEADRLLDMG
FENSLNAILSFLPKQRRTGLFSATQTQELEKLVRAGLRNPVRIVVKEKGVAADGAARRTP
SRLCNYYTVCRAEDKFNQLVAFLRQHKHQKQLVFFSTCACVEYFGRALETLVKKVPVHCI
HGKMKDKRNKIFADFRAVKSGILVCTDVMARGIDIPDVNWVLQYDPPSSASAFVHRCGRT
ARIGNRGNALVFLLPMEESYVNFLSINQKCPLQKMPAVSDVVDVMAKVKALAQADRAVFE
KGMKAFVSYVQAYAKHECSLIFRVKDLDFPSLARGFALLRLPKMPELRGKSFPDFQPAAL
DTDTIRFKDKQREKLRQKKLAELKLRRLDGDETKAKKSTSNQAWSKQKAKKDRRKMKAAK
RKRAQGSDDERDMEELLKDTRLLKKLKKGQIREDDFERQLTGGAEH
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacacaaccgacgggacgtgggagactttacctgttcaattaaacaataatatc
ttagagacgctccgcgagctcaaattcacgcacatgactcctgtgcaggctgcctgtatc
ccactttttatgggcaacaaggacgtggctgccgaggcagtaaccgggagtgggaagaca
ctggcgttcgtcattcccgtcctggagtttctgctcaagagagaggagaagctgaagaag
atgcaggtgggtgcgctggtggtcacacccacgcgcgagttggccgcgcagatcagccaa
gtgatcggacactttcttcaaaagtttccgcagttcacgcagatgctgatgatcggcggc
aacaaccccatggaggatgtcgaaaagttcaaagaaagcggggccaacatcgtggtggcc
acccccggccgcctggaggacatgttccgcaggaagggggacggcgtggacctggccgcc
tcggtcaagagtctggacgtgctggtcctggacgaggccgacagacttctggacatgggc
tttgagaacagcctgaacgccatcttgagcttcctgccgaagcagcggcgcacgggcctg
ttctcggccacgcagacgcaggagctggagaaactggtccgcgctggactcaggaacccg
gtccgcatcgtggtcaaggagaagggcgtggccgctgacggcgccgcccgcaggacgccc
tccagactgtgcaactattatacggtgtgtcgcgccgaggacaagttcaaccagctggtg
gcatttctacggcaacacaaacaccagaagcagctcgtcttcttcagcacgtgcgcctgc
gtggagtactttggccgcgctctggagactctggtgaagaaggtccccgtccactgcatc
cacggcaagatgaaagacaagcgcaacaaaatcttcgccgacttccgagctgtcaaaagt
ggcatcctggtgtgcacggacgtgatggcgcggggcatcgacatccccgacgtcaactgg
gtgctgcagtacgacccccccagcagcgccagcgctttcgtgcaccgctgcggtcgcacg
gcgcgcatcggtaaccgtggcaacgccttggtcttcctgctgcccatggaggagtcctac
gtcaacttcctgtccatcaaccagaagtgcccgctgcaaaaaatgcccgctgtgagcgat
gtggtggacgtgatggccaaagtgaaagcgctggcgcaggcggaccgcgccgtcttcgaa
aagggcatgaaggccttcgtgtcgtacgtgcaggcctacgccaagcacgagtgcagcctc
atcttcagggttaaagatttggactttccctcgttggctcgcggcttcgcgctccttcgc
ctgcccaagatgccggaactgcgcgggaagagcttccctgacttccagccggcagcattg
gacacagacaccattcgcttcaaggacaaacaacgcgagaagctgcggcagaagaagttg
gcagagctcaagttgaggcggctggacggcgacgagacgaaagccaagaaaagtaccagc
aaccaagcgtggtccaaacagaaggccaagaaggacagacgcaagatgaaggccgccaag
agaaaacgagcacagggctcagacgacgagcgagacatggaggagctcctgaaggacact
cgtctgctgaagaaactgaagaaggggcaaatccgcgaggacgactttgaacgacagctc
accggtggggcggaacattaa
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