Syngnathus scovelli (Gulf pipefish): 125979387
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Entry
125979387 CDS
T08785
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4 isoform X1
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125979387 (prpf4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sscv03041
]
125979387 (prpf4)
Spliceosome [BR:
sscv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
125979387 (prpf4)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
EIF3I
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
ANAPC4_WD40
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
PRP4
Beta-prop_EML
WDR90_beta-prop_4th
WD40_MABP1-WDR62_1st
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_DCAF4
Beta-prop_RIG_2nd
WD_LRWD1
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_WDR11_1st
WD40_like
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
125979387
NCBI-ProteinID:
XP_049593514
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Position
13:15302172..15305695
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AA seq
511 aa
AA seq
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MSDDEDLAPAPKKGRVFYGSLEEKERERLNAELAGALTTGSDGVKAGIEAGNINISSSET
LELEEHVNERQQEALAEFERRRRARQITVSTDDTEVKAGLRALGEPITLFGEGPADRRER
LRGILSVVGPDALKKSRRDEERAKRSQAECHQTWYHEGPASLKDARLWLARYSLPRSMKR
LEVARGQKEICEATKTIRQQELNKSLRNLNNFCSQIGDDRPISFCHFSPDSKMLATASWS
GLCKLWSVPDCNLIRTLRAGHNTNVGAVVFRPQAGVSLDPSDVSLASCAADGSVKLWNLL
SDEPVVSIDDHGERVARVCWHPSGRFLGSTCYDHSWRLWDMEVQEEILHQEGHSKGVHDL
HFHPDGSLAATGGLDAFGRVWDLRTGRCVVFLEGHLKEIYSVHFSPNGYHLATGSGDNTC
KVWELRNRKCLYTIPAHHNLLSGVRFQPTDGQFLLTCAYDNVAKVWSHPGWMPLKTLAGH
EGKVMGVDVSPDGKLIATCSYDRTFKLWMSE
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacgacgaggacttggcccctgccccgaagaaaggtcgcgtgttctacggaagc
ctggaagaaaaagagcgtgagcgtctgaacgcggagctcgccggcgctttgacgactgga
tccgatggcgtcaaggcaggaatcgaagcgggaaacatcaacatctcgtcttccgagacg
ctggagctggaggagcacgtcaacgagaggcaacaggaagcgctggccgaatttgagaga
aggcggcgagcgcggcagatcaccgtatccaccgacgacaccgaggtcaaggcggggctg
cgagcgctcggagagcccatcaccttgtttggggaggggccggcggatcggcgggagagg
ctgcgtggcattttgtccgtggtgggtccagatgcgctgaagaagtccagaagagacgaa
gagcgagccaagcgatcccaggcggagtgccatcagacgtggtaccacgaaggcccggct
tctctcaaggacgcccgcctctggttggctcgttactctctgcccaggtcgatgaaacgt
ctggaggtggcacggggccaaaaggaaatttgcgaggcaaccaaaaccatccgccagcag
gagctgaacaagagcctgagaaacttgaacaacttctgcagtcagatcggcgacgatcgg
ccaatcagcttctgccacttcagtcccgactccaaaatgctggccaccgcctcctggagc
ggcttgtgcaagctgtggtctgtccccgactgcaacctgattcgcacgctgcgagcaggt
cacaacaccaacgtgggcgcggtggtcttccgcccgcaggccggcgtgtctctcgaccca
tcggacgtcagtttggcctcgtgcgcggcggacggctccgtgaagctgtggaacctgctc
agcgacgagccggtggtgagcatcgacgaccacggcgagcgggttgcccgcgtgtgttgg
catccgtccggaaggttcttgggatccacgtgctacgatcactcgtggcgtctttgggac
atggaggtgcaggaggagatcctgcaccaggaaggccacagcaaaggcgttcacgacctt
catttccatcccgacggttcgctggcggctaccgggggcctggatgccttcggcagagtg
tgggacctccgcacaggacgctgcgtggtcttcctggaaggacaccttaaggagatctac
agcgtgcacttttcccccaacggctaccacctggccacaggaagtggagacaacacctgc
aaggtttgggagctgaggaacaggaagtgtctctacacaatccccgcccaccataacctt
ttgtcgggtgtccgattccagcccacggacggccaattcctgttgacgtgcgcgtacgac
aacgtggcgaaggtttggagtcaccccggctggatgccgctcaagacgctcgccggccat
gagggcaaggtgatgggtgtggacgtttctcccgacggcaaactcatcgccacgtgctcc
tacgacagaacctttaaactttggatgtcagagtga
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