Syngnathus scovelli (Gulf pipefish): 125979501
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Entry
125979501 CDS
T08785
Symbol
prpf38a
Name
(RefSeq) pre-mRNA-splicing factor 38A
KO
K12849
pre-mRNA-splicing factor 38A
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125979501 (prpf38a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sscv03041
]
125979501 (prpf38a)
Spliceosome [BR:
sscv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
125979501 (prpf38a)
Complex C
U4/U6.U5 tri-SnRNP related factors
125979501 (prpf38a)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
Motif
Other DBs
NCBI-GeneID:
125979501
NCBI-ProteinID:
XP_049593743
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All DBs
Position
13:15380379..15382259
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AA seq
319 aa
AA seq
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MANRTVKDANSIHGTNPQYLVEKIIRTRIYECKYWKEECFGLTAELVVDKAMELKFVGGV
FGGNIKPTPFLCLVLKLLQIQPEKDIIVEFIKNEDFKYVRLLGAMYMRLTGTTVDCYKYL
EPLYNDYRKIKTQNRNGEFELMHVDEFIHELLHSERMCDIILPRLQKRQVLEEAEMLEPR
VSALEEDLDEDLDEAESSDDDDEDDEGGGRPDGVPGPELHRRGARRCDDRPRHSPSPPRR
RRGSRSPRRRSRSPKARRSPDARRERRRGSKSPRRHRERRRRSKSPAATHRRSRRHRSRS
KSPDKSGKKSRKKSRRSDP
NT seq
960 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacaggacggtgaaagacgccaacagcatccacgggaccaacccgcagtacttg
gtcgagaagattatccgaacccgcatttacgagtgcaagtactggaaagaggaatgcttt
gggctgaccgccgagctggtggtcgacaaggccatggagctcaagtttgtgggcggcgtg
ttcgggggcaacatcaagcccacgccgttcctgtgtctcgtcctcaagctgctgcagatc
cagcccgagaaggacatcatcgtcgagttcatcaagaacgaggacttcaagtacgtgcgc
ttgctcggcgccatgtacatgcgcctcaccggcacgacggtcgactgctacaagtacctg
gagccgctttacaacgattacaggaagatcaagacgcagaaccgtaacggcgagtttgag
ctgatgcacgtggacgagttcatccacgagctgcttcactcggagagaatgtgcgacatc
atcctgccgcggctgcagaagcgccaggtcctggaggaggccgagatgctggagccgcgc
gtcagcgccctggaggaggacctggacgaggacctggacgaggccgagagcagcgacgac
gatgacgaggacgacgagggcggcgggcggcccgacggggtccccggtcccgagctgcac
cggcggggggcccgccggtgcgacgacaggccgcgccactcgccctcccccccccgccgc
cgccgcggcagccgctcgccacgccgcaggagccgctcgcccaaggcccgccggagcccc
gatgcccgccgcgagcgccgccgcggcagcaaaagcccgcggcgccaccgggagcgcagg
cgccgctccaagtcgccggccgccacccaccgcaggagccgccggcaccgcagccgctcc
aagagccccgacaagagcggcaagaagagtcgcaagaagagtcgccgcagcgacccgtag
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