Syngnathus scovelli (Gulf pipefish): 125979551
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Entry
125979551 CDS
T08785
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
125979551 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125979551 (mtrex)
03041 Spliceosome [BR:
sscv03041
]
125979551 (mtrex)
03009 Ribosome biogenesis [BR:
sscv03009
]
125979551 (mtrex)
03016 Transfer RNA biogenesis [BR:
sscv03016
]
125979551 (mtrex)
Enzymes [BR:
sscv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125979551 (mtrex)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
125979551 (mtrex)
Spliceosome [BR:
sscv03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
125979551 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
125979551 (mtrex)
Ribosome biogenesis [BR:
sscv03009
]
Eukaryotic type
Pre-60S particles
Helicases
125979551 (mtrex)
Transfer RNA biogenesis [BR:
sscv03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
125979551 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
125979551
NCBI-ProteinID:
XP_049593853
LinkDB
All DBs
Position
13:11717130..11729078
Genome browser
AA seq
1036 aa
AA seq
DB search
MADTFGDLFSVFDDEQKPTTSKNLPASVALDTVNAAGLNNDTDARSSGKTKRDSPDSDGG
EELGIGKKARLDTVAANDLNLAEFMPQVKVEPVETAEGCSHEVALPASDEYKPLRPRVGN
AAKEYPFILDPFQQEAILCLDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPI
KALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVVF
DEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTDY
RPTPLQHYVFPAGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDSGSGNTGGKWDSKGRK
GGTKGPSSVFKIVKMIMERNFQPVIIFSFSKKECEAYALQVAKLDFNKEEEKRLVEEVFN
NAVDCLSDEDKRLPQVEHVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETF
AMGINMPARTVLFTSARKFDGKNHRFITSGEYIQMSGRAGRRGMDDRGIVIFMADEKMSP
SVGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRALPGVVERI
KKLETEYHTIRIPNEESVVTYFKIRQQLAKLGKEILEFIHKPKYCLPFLQPGRLVKVKNE
DADFGWGVVVNFSKKANVKISTDAEPLFVAEVLLHCSKDSVKEAATEAAKPAAPGTTGEM
QVVPVMLHLLTAISSVRLYIPKDLRPLDNRQLLLKSIQEVQKRFPDGIPVLDPVDDMGIK
DAGLKKVVQKVEAFEHRMYSHPLHSDPNLEAVYSLCEKKALIAGDVRTAKRELKKARTVL
QMDKLKCRKRVLRRLGFASPSDVIEVKGRVACEISSADELLLTEMVFNGLFNDLTAEQAT
ALLSCFVFQENASEMPKLTEQLAAPLRQMQECAKRIAKVSADAKLDVDEDDYLSSFKPHL
MDVVFAWANGATFAQICKMTDVFEGSIIRCMRRLEEVLRQMCSAAKAIGNTELENKFAEG
ITKIKRDIVFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcggacacctttggagatttattcagcgtatttgacgatgaacaaaagccaactacg
agcaagaacttgccggcctcggtcgctctagacacagtgaatgcagcagggttaaacaat
gacacagatgctcgctcgtctggcaagaccaagagggactcgccggatagtgatggagga
gaggagctgggcatcgggaagaaagctcgcctcgacacggtcgctgccaatgacttaaat
cttgcagaatttatgccccaagtcaaagtggagccagtggagacggcagagggctgctca
catgaggtcgctctgcctgccagtgatgaatataaacctctcagacctcgagttggaaat
gctgcaaaggagtacccattcatcctggatcccttccagcaggaggccattttgtgcctc
gacaacaaccagtcggtgctcgtatctgcgcacacctcggccggcaagactgtctgcgcc
gagtatgccattgcgctggccctccgcgagaagcagcgtgtcatcttcaccagccccatc
aaagcgctgtccaatcagaagtatcgagagatgtacgaggagtttcaagacgtgggtctg
atgacaggcgacgtcaccatcaatcccacagcctcttgcctcgtcatgacgacagagatc
ctgaggagcatgctgtaccgtggctcggagatcatgagggaagtggcgtgggtggtcttt
gacgagatccactacatgagagatgccgagcgtggcgtggtttgggaggaaaccatcatt
ctgcttcccgacaacgtgcattacgtcttcttgtcagccaccatccccaacgccaggcaa
tttgctgaatggatatgtcaccttcataagcagccgtgccatgtggtgtacacagactac
cgcccgacaccgctgcagcactacgttttcccagcagggggcgacggactccaccttgtg
gtggatgagaacggagacttcagggaagataacttcaatacggccatgcaggttttgaga
gacgcgggggattctgggagtggcaatacgggtggcaagtgggactccaaaggacgcaaa
gggggaacaaaaggtccgtccagcgtgttcaagatcgtgaagatgatcatggagaggaac
ttccagcctgtcatcattttcagcttcagcaagaaggaatgcgaggcatatgctttgcag
gtggccaagctggattttaacaaggaagaggagaagcgtctagtggaggaagtcttcaac
aacgcggtggactgcctgtcagatgaggacaagaggctcccgcaggtggagcacgtgctg
ccgctgttgaagagaggaatcggcatccatcacggcggtcttctgcccatcctgaaagag
accatcgaaatcctcttctcggaaggcctgatcaaggcactgtttgccaccgagacattc
gccatgggtatcaacatgccggcgcgcactgtgctcttcaccagcgcccgcaagtttgat
ggcaagaatcaccgctttatcacctcaggcgaatacatccagatgtcagggcgtgctggc
aggagaggaatggatgacagaggcatcgttattttcatggcggacgagaaaatgagtccg
tctgtgggcaaacagctcctcaagggctcggcagacccactgaacagcgccttccacctg
acgtacaacatggtgctcaacctgctgcgtgtggaggagatcaaccccgagtacatgctg
gagaaatccttctaccagttccagcactaccgagcgctccccggcgtcgtcgagagaatt
aagaagctggagacggagtaccacaccatcaggatccccaatgaggagagcgtggtgacc
tacttcaagatccgccagcaactggccaaactggggaaggaaatcctggagttcatccac
aagcccaaatactgcttgcccttcctgcaacccgggcgcctcgttaaggtgaaaaatgaa
gacgcagacttcggctggggcgtggtggtcaacttctccaagaaggcaaacgtgaagatc
agcacagacgccgagccgctctttgtggccgaggttctgctgcactgcagcaaggatagc
gtcaaggaggcggccacggaagcggccaaacccgccgcgccgggtacgactggagagatg
caggtggtccccgtgatgcttcacttgctgaccgccatcagctctgtgcgtctttacatc
cccaaagacttgagacccttggacaaccgccagctcttgctcaagtccatccaggaagtg
caaaagcgcttcccagacggcatccccgtcctggaccccgtggacgacatgggcatcaag
gacgccgggctgaagaaggtggtccagaaagtggaggccttcgagcaccgaatgtactcg
cacccgctgcacagcgaccccaacctggaggccgtctactcgctctgtgaaaagaaagct
ctgatcgcgggtgacgttcgcacggccaagcgcgagctgaagaaggctcgcaccgtgctg
cagatggacaagctcaaatgccggaagcgagtgctacgacgcctcggcttcgccagccct
tccgacgtcatcgaggtgaagggacgcgtggcttgcgagatcagcagcgctgacgagctt
ctgctgacagagatggtgttcaacggcctcttcaacgacctgacggcggaacaagccacc
gcgctgctctcctgctttgtcttccaggaaaatgccagcgagatgccaaaactgactgag
caactagcagcccccctccgacaaatgcaggagtgcgccaagcgcatcgctaaggtgtcg
gccgacgccaagctggatgtggacgaggatgactacctaagctccttcaagcctcacctc
atggatgtggtctttgcgtgggccaacggcgccacctttgcacagatctgcaagatgacc
gacgttttcgaaggaagcatcatccgctgcatgcggcgtctggaagaagtgctacggcaa
atgtgctcggccgccaaagccatcggcaacacggagcttgagaataagtttgcagaagga
atcacaaagattaagagggacattgtgtttgctgccagtctctatttgtaa
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integrated database retrieval system
