Syngnathus scovelli (Gulf pipefish): 125979568
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Entry
125979568 CDS
T08785
Symbol
pus1
Name
(RefSeq) pseudouridylate synthase 1 homolog
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
sscv03016
]
125979568 (pus1)
Enzymes [BR:
sscv01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
125979568 (pus1)
Transfer RNA biogenesis [BR:
sscv03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
125979568 (pus1)
Prokaryotic type
125979568 (pus1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
DUF2344
Motif
Other DBs
NCBI-GeneID:
125979568
NCBI-ProteinID:
XP_049593891
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All DBs
Position
13:complement(11941526..11943750)
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AA seq
417 aa
AA seq
DB search
MIKTRLPLSALVTWRRVAATNGGLFKFLFNMSEAAQNEPAANLLKRSKEDNEVVQSTKRA
KSEGDNTDEERRYPKKKVILLMAYCGKGYYGMQRNPGNAQFRTIEDDLVAALIKSGCIPE
NHGDEMKKMSFQRCARTDKGVSAAGQVVSLKLWMIEDIVEKINEHLPPQIRILGVKRVTQ
GFNSKNNCDARTYSYLLPTVAFSHKDYDTNDTASFRLDPETLQKVNHLFARFKGTHNFHN
FTSQKSPKDPSARRYITEMSCGEPFILNQNEFAVITVRGQSFMMHQIRKMIGLVIAVIKG
YAQEKVMDRSWEQDKVDVPKAPGLGLVLERVHFDRYNKRFGGDGLHECLEWDGEEEAIKA
FKEAHIYPTIVETECQEGSMRSWMATLPIHDFHGTATGMQNNKEQKEEDADIANDSD
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgattaaaaccaggctgccgctgagtgccttggttacctggagacgcgtagcagcaaca
aacggtggtctttttaaattccttttcaacatgagtgaagcagcacaaaacgaaccggct
gccaatctcttgaaacgatccaaagaggacaatgaggttgttcaatccacaaaaagagcc
aaatccgagggagataacaccgatgaggaaaggcgataccccaaaaagaaagtcatcctc
cttatggcatactgtggcaaggggtactatggaatgcagcgaaatcctgggaacgctcag
ttccggacaatagaagatgatctcgtcgcagcccttatcaaatcaggctgcatccctgaa
aaccatggggatgaaatgaagaagatgtctttccaaagatgtgccaggactgataagggt
gtgtctgcggcaggccaagtggtgtctctgaagctgtggatgattgaagatatagttgaa
aaaattaacgagcacctaccacctcaaatcagaatccttggtgtgaaacgagtgacccaa
ggcttcaattccaaaaacaactgtgacgctcgcacatattcttacctgcttccaacagtg
gccttttctcataaagactacgacacaaatgacacggcatccttccgcctcgatccggag
acacttcagaaagtcaaccatctgtttgcgcgattcaaaggaacccacaacttccacaac
ttcacatcccagaagtctccgaaggaccccagcgcccgtcgctacatcactgagatgtcc
tgcggcgagccttttatcctcaatcaaaacgaatttgctgtcatcacggtgcgaggccag
agctttatgatgcatcaaatccggaagatgattggccttgtcatcgcagtcattaaggga
tacgcgcaggagaaagtcatggaccgcagttgggaacaagacaaagtggatgtgcccaaa
gccccaggacttggcttggtcttggagagggtccactttgacaggtataacaaacgcttc
ggaggcgacgggctccacgagtgtctcgaatgggacggtgaagaggaagccatcaaagcc
ttcaaagaggctcatatttatccaaccattgtggagacggagtgtcaggagggctccatg
cgcagctggatggccacactccccatacatgacttccacggcacagcgactggaatgcaa
aacaataaagagcagaaagaggaagatgcagatattgcaaatgactctgattaa
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