Syngnathus scovelli (Gulf pipefish): 125979640
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Entry
125979640 CDS
T08785
Symbol
pdlim5b
Name
(RefSeq) PDZ and LIM domain protein 5b isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
125979640 (pdlim5b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
sscv04990
]
125979640 (pdlim5b)
Domain-containing proteins not elsewhere classified [BR:
sscv04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
125979640 (pdlim5b)
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GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
LIM_FHL2-3_N
zf-C3HC4_3
PDZ_2
PilX
Motif
Other DBs
NCBI-GeneID:
125979640
NCBI-ProteinID:
XP_049594024
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Position
13:10738096..10761725
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AA seq
611 aa
AA seq
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MSNYSVTLAGSAPWGFRLQGGKDFGLPLTISRLTDGGKAAKAKISVGDVILSINGISTDT
MNHLEAQNKIKACTGNLSLNLQRAASAAKGGSQTQVEPQEIIKPVPITHTAPSSTYSKPS
SQAGPAYNKTARPFGGDRGSPTPSSAPKVAFIPSESSAFTPAQPLSQPPQPPFPIKSNLA
APDPISAPQASPTRSTISSLSSSSSSSSSPGKVTAPPSQPSVPQPSVYNSPINLYSNNNA
CEVAMGQRRGLLESQGLSEQFNGKDLDMNHAAALSEASKKRLIEDTEDWHPKTGTAQSRS
FRILAQLTGTENELAAENNGKNDVLDKASPSVHTLPAAKTYSKQTPPRNGNVVVAPSAFK
SPVAQNNLSYQPGGPSGTLLSQGFLKGGAAPSFGKVTNPPPKGPDRPIPQPHPQDLNSVV
QRAEHIPAGTRTPMCNKCNNVIRGPFLVAMGMSWHPEEFNCAHCHSSLTDCGFVEEKGQV
YCEHCYEQFFAPTCALCQQKILGEIMNALKQTWHVSCFVCSACQQPIRGNMFHMEDGQPY
CEMDYYKLFGTNCHGCDFPIEAGDKFLEALGFTWHDTCFVCAVCTANLEGQPFFSKKDKP
LCKKHAHTVNI
NT seq
1836 nt
NT seq
+upstream
nt +downstream
nt
atgagcaactacagtgtcaccctggctggttcggccccgtggggctttagactacaagga
ggaaaggacttcggccttccccttacgatttcacggctgactgatggaggaaaggcagcc
aaagccaagattagcgtgggagacgtcatcctttccataaatggcatctccaccgacacc
atgaaccacctcgaagcccagaacaagattaaagcctgcacgggcaatctgagcctaaat
ctacagagagccgcaagtgcagctaaaggcgggtctcagacgcaggttgagcctcaagaa
atcattaagcccgtcccaatcacccacacggctccgagcagcacatactcaaagccgtca
agccaggccggtcccgcctacaacaagacagcccgaccatttgggggcgacagaggctct
cccactccttcctccgcccccaaagtggccttcatcccctccgaatcgtcggcattcacg
ccagctcaaccactctctcaacccccgcaacctccgttcccgatcaagtccaacctcgcc
gccccggatcccatttcggctccccaggctagtcccactcgctccaccatcagctccctg
tcctcctcctcgtccagttcgtcctctcctggcaaagtgacggcccctccctcccagccc
tctgtgccgcagccgtccgtctataactcccccatcaatctttattccaacaacaacgcc
tgcgaggtggccatggggcaaaggcgaggcctcctggagagccaggggctgtcggagcag
ttcaatgggaaagatttggacatgaaccacgcagctgctctgagtgaagccagcaagaag
cgactaattgaggacacggaagactggcacccgaaaaccggaaccgcccagtcccgctcc
ttccggatcctggcccagctcactggtactgaaaatgagctcgctgccgagaacaatgga
aaaaatgatgtcttggataaagcctctcccagtgtgcacaccttgcctgcagccaaaaca
tactccaaacaaacgcctcctcggaacggcaacgttgtggtggctccctctgcgttcaag
agccccgtggcccagaacaacctctcctatcagcctgggggtccgtcaggtactttattg
agccagggcttcctcaagggtggtgcagccccttcgttcggcaaggttaccaatccccct
cccaaaggcccagaccggcccatcccgcagcctcacccccaggacctcaactctgtggtg
cagagagccgagcacatcccggccggaacacgcacccccatgtgcaacaagtgcaataac
gtcatcaggggccccttcctagtagccatgggcatgtcctggcaccccgaagaattcaac
tgcgcccactgccactcttccctgacagactgcgggtttgtggaggagaagggccaggtg
tactgcgaacactgctacgagcagttctttgctcccacttgcgccctctgccagcagaag
atcctgggggagatcatgaacgccttgaagcaaacctggcacgtgtcctgttttgtctgc
tcggcctgtcagcagccaatccggggcaacatgtttcatatggaggatgggcagccatac
tgtgaaatggactactacaaattgtttggcacaaactgccatggctgtgacttccctatt
gaggcgggagacaagttcttggaggctttaggattcacatggcatgacacctgctttgtg
tgcgcggtgtgcaccgccaatctggaaggtcaacccttcttctccaagaaagacaagcct
ttgtgcaagaaacatgcccacactgtcaatatctga
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