Syngnathus scovelli (Gulf pipefish): 125979750
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Entry
125979750 CDS
T08785
Symbol
trim23
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM23 isoform X1
KO
K07963
tripartite motif-containing protein 23 [EC:
2.3.2.27
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sscv04121
]
125979750 (trim23)
09183 Protein families: signaling and cellular processes
04031 GTP-binding proteins [BR:
sscv04031
]
125979750 (trim23)
Enzymes [BR:
sscv01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125979750 (trim23)
Ubiquitin system [BR:
sscv04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
125979750 (trim23)
GTP-binding proteins [BR:
sscv04031
]
Small (monomeric) G-proteins
Arf/Sar Family
Others
125979750 (trim23)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arf
Roc
Ras
G-alpha
SRPRB
zf-RING_UBOX
zf-RING_5
zf-B_box
Gtr1_RagA
zf-RING_2
MMR_HSR1
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
125979750
NCBI-ProteinID:
XP_049594273
LinkDB
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Position
13:13683366..13687082
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AA seq
581 aa
AA seq
DB search
MAASAAGINKQGSLTSIEPCIRHGRAANGGTVKVLECGVCEDVFSLQGDKVPRLLLCGHT
VCHDCLTRLPLHGRAVRCPFDRQVTELGDSGVWGLKKNFALLELLERLQNGATNQSGMAE
DALKGMSEQCVIRCDEDESHTATMYCTVCATHLCAECSQLTHSTRTLAKHRRVPLADKPH
EKTLCPQHQVHAIEFVCLEEACQPGPLMCCVCKEYGKHQGHKHILLETEANQIRASILDM
AHCIRTFTEEVSEYSRKLLGIVQQIEGGEQIVEDGVGMAHTEHVPGTAESARSCVRAYFA
DLHETLCRQEEMALSVVDAHVRERLIWLRQQQEDMTILLSQVSTACLHCEKTLQQDDCRV
VLAKQEINCLLETLQKQQHQFTELADHIQLDAGIPVTFTKDNRVHIGPKMEIRVVTLGLD
GAGKTTILFKLKQDEFMQPIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQ
AVVFVIDSCHRDRLMEAHSELAKLLTEKELRDALLLIFANKQDVPGVVSVEEMTELLSLH
KLCCGRSWHIQGCDARSGMGLHEGLDWLSRQLVAAGVLDVA
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atggccgcctcagctgcaggaataaacaagcagggctccctgacaagcatagaaccgtgc
attcgacacggccgggcggccaatggaggcaccgtcaaggtgctggagtgcggcgtgtgt
gaggacgtcttctcgctccagggcgacaaggtgccccgcctcctgctgtgcgggcacacc
gtttgccacgactgcctcacccggctgcccctgcatggccgggcggtccgctgccccttt
gaccggcaggtgacggaactgggtgactctggcgtgtggggcctaaagaagaactttgct
cttctggagcttctggagcgattgcagaacggtgccaccaaccagtcgggaatggcggag
gacgctctgaagggaatgagcgagcagtgcgtgatccgctgcgacgaggacgagagccac
acggccaccatgtactgcacggtgtgcgctactcacctgtgcgccgagtgctcgcagctc
acccactccacccgcacgctggctaagcaccggcgcgtgccgctggccgacaagccgcac
gagaagacgctgtgcccgcagcaccaggtgcacgccatcgagttcgtgtgcctggaggag
gcctgccagccgggtccgctcatgtgctgcgtgtgcaaggagtacggcaaacaccaagga
cacaagcacatcctcctggagacggaggctaaccagatccgggcgtccatcctggacatg
gcgcactgcatccgtaccttcacagaggaagtgtcagagtactccaggaagctgttaggc
atcgtgcagcagatcgagggcggcgagcagatcgtggaggacggcgtcggcatggcgcac
acggaacatgtgcccggcacggcggagagcgctcgctcctgcgtgcgcgcctacttcgcc
gacctccacgagacgctgtgtcgtcaggaggagatggcgctgagcgtggtggacgcccac
gtccgtgagaggttgatctggctcaggcagcaacaggaggacatgaccatcttgctctcc
caggtgtccaccgcctgcctgcactgcgagaagactctccagcaggacgactgcagagtt
gtgctggccaagcaggagatcaactgtctgctggagactcttcagaagcagcaacatcag
ttcacagagttggccgaccacatccagctggacgccggcatcccggtcaccttcaccaag
gacaaccgcgttcacatcggtcccaagatggagatccgagtggtgactctggggctggac
ggcgctggcaaaaccaccatcctcttcaagctcaagcaggacgagttcatgcaacccatt
cccaccatcggtttcaatgtggagacggtggaatataagaacttgaaattcaccatctgg
gacgttggaggaaaacataagctgaggccattgtggaaacactattatctcaacactcaa
gcggtggtgtttgtgattgacagctgtcatcgggaccgactgatggaggcgcacagcgag
ctggccaagctgctgactgagaaggagctgagagatgctctgcttctcatctttgccaac
aagcaggacgttcctggcgtcgtttccgtagaggagatgacagaactgctgagcttgcac
aagctgtgctgcggcaggagctggcacatccagggctgtgacgcccgtagcgggatgggc
ctccacgagggtctggattggctatccaggcaattggtggccgccggcgtcctggacgtg
gcctag
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