Syngnathus scovelli (Gulf pipefish): 125979801
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Entry
125979801 CDS
T08785
Symbol
chd1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
sscv03021
]
125979801 (chd1)
03036 Chromosome and associated proteins [BR:
sscv03036
]
125979801 (chd1)
Transcription machinery [BR:
sscv03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
125979801 (chd1)
Chromosome and associated proteins [BR:
sscv03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
125979801 (chd1)
SLIK complex
125979801 (chd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
Helicase_C
CHD1-like_C
Chromo
HDA2-3
DEAD
CHDCT2
Motif
Other DBs
NCBI-GeneID:
125979801
NCBI-ProteinID:
XP_049594392
LinkDB
All DBs
Position
13:complement(4783204..4829315)
Genome browser
AA seq
1802 aa
AA seq
DB search
MARHNEEETVSNSSGESSNSDDESGSGSASGSGSGSSSSSSSSSSQSGSSDSGSGSDSGS
QSDSETEKSKEKIDPPNKSNIDGAEFWKSNPSILAVQRSAMLRKQQLQQQQQQQQQQRQS
SSNSGSDEDSSSSDDSDSSSGSKRRRNSGSSDSGSDSGSGSGSGSDSSADNNSEGTASDY
EPSQTTKNRKPPTKMNFRNGKKSSSQKKKAQKCSSSEDEDDNYKKVVAAGPRRQATVNIS
YKEDEELKTDSDDLVEVLGEDVPQPEEDEFETLERVMESRIGRKRAVGSVTTVYAVEADG
DPNTNFNSNKEAGEIQYLIKWKNWAHIHNTWETEETLKAQNVRGMKKLDNFKKKDQEKKK
WLKTASPEDIEYLNCQEELINDLHSQYQLVERIIGHSNQKSAAGFPDYLCKWQGLPYSEC
SWEDGALIAKKFQKCIDDYMSRNQSKTIPFRDCKVLKQRPRFVPMKKQPHYIGGDGLELR
DYQLHSLNWMAHSWCKGNSCILADEMGLGKTIQTISFLNYMFNEHQLYGPFLLVVPLSTL
TSWQREIQLWAPQMNIVVYLGDISSRNMIRTHEWMHVHSKRLKFNILLTTYEILLKDKSF
LGSVNWAFIGVDEAHRLKNDDSLLYKTMIDFKSNHRLLITGTPLQNSLKELWSLLHFIMP
EKFHSWEMFEEDHGKGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAIQ
KQYYKWILTRNYKALSKGIKGSTSGFLNIMMELKKCCNHCYLIKPPEDHEFLNRAEALQQ
LIRSSGKLVLLDKLLVRLKERGHRVLIFSQMVRMLDILADYLRSRQFLFQRLDGSIKGEM
RKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG
QKRQVNIYRLVTKGSVEEEIIERAKKKMVLDHLVIQRMDTTGKTVLHTGTAPSSSAPFNK
EELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENDPGPSTVGEELLSQFKVA
NFTMMEEEEIDMDSERSQRSWDDIIPEAQRRRIEEEERQKELEEIYMLPRMRNCAKQRSF
NAGEGRRLGRSRRYSGSDSDSHSDRKRPKKRGRPRTIPRENIKGFTDAEIRRFVKSYKKF
GGPLERLDAIARDAELVDKSEHDLKRLAETVHNGCVRTLRENPCGPEKTSGGRRGKVKGP
TFRISGVQVNAKLVISHEEELAPLHKAIPADPEERKKYMIPCHSKAAHFDLDWGKEDDSS
LLIGIYEYGYGSWEMIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLAKK
EAQKQAGTVNSRKRKPRSKKRETVKPSQIDEMIKSASSDPPSDKRSDDEDEIDEEMEEMT
EKALSRRTRSDRETVKEENQEEEDDDEEEEEEEEEEAQQDNGSSSGEREYKEEIKKECKK
EKKEDSWDSKDNKEPKERKEVKPLDSVHKQEDSMEKTESKAEVRERLKKASDGPVLITAS
GENIPVSEESEELDQKTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGD
HITECLKEYSNPDLIKQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQENAQAMEQNTR
STNTIGFKHTDIERLRDNSHQDDSSRDSYSSDRHQPSVRYHDSSKERHSSEAHRKAAESR
KRPYSSLSNGKDHRDHYRPDSRDRDRQDRHYSDGKQRKLEELRSSRDHRPDLKDLSHSDQ
RSSYRYHSDWQTEQRASASGPRSPRDQRSPYDSRSPLGHRSPFDYSSDHKSTPEQIWSTR
KT
NT seq
5409 nt
NT seq
+upstream
nt +downstream
nt
atggcaagacacaatgaggaggaaactgtaagcaacagcagtggagaatcaagcaattct
gatgatgaatctggttctggatcagcatctggttctggatcaggttccagttcaagctcc
tctagcagcagcagtcagtcagggagtagcgactcaggaagtggctcagactctggcagc
cagtcggattcagagacagaaaaatccaaggagaagattgaccctccgaacaagtcaaac
attgatggcgctgagttttggaagtccaatccaagtatcctagcagtccaacgatctgct
atgctcaggaaacaacaactccagcagcagcagcagcagcaacaacagcagagacaaagc
tcctcaaatagtggatccgatgaggactcatcaagtagcgatgactcagactcctcaagt
ggatccaaaaggagaagaaattctggctcttcggactctggatcagattctggatcagga
agtggatctggatcagactcatctgctgataacaatagtgaaggaactgcttcagactat
gagcctagtcaaacaaccaaaaacagaaagcctcccactaagatgaattttagaaatggc
aaaaagagcagctcccagaaaaagaaagcccagaaatgttcgtcttctgaggacgaggat
gataactacaagaaggttgttgccgctggtccacggcggcaggccaccgtcaacatcagc
tataaggaagatgaggagctgaaaacagattcagatgaccttgtggaagttcttggtgaa
gatgtccctcaacctgaggaagatgagtttgaaacacttgagagagtgatggagagcaga
atcggaaggaaaagagctgtggggagtgtgactacagtatatgctgtagaagcggatgga
gacccaaataccaactttaattccaataaggaggcaggggaaatccagtatctaatcaaa
tggaagaattgggcccatattcacaacacttgggaaacagaagagaccctgaaggcgcaa
aatgttaggggtatgaagaaactggacaattttaagaagaaggatcaggagaaaaagaaa
tggttgaagacggcttcacctgaggacattgagtatctcaattgtcaggaagaacttatc
aatgacctgcactctcagtaccagcttgtggagaggatcataggccattctaaccaaaag
tcagccgctggcttcccagactatctgtgcaagtggcagggattgccgtactctgaatgt
agctgggaagatggagctctgattgccaagaaatttcagaaatgtattgatgattacatg
agcagaaaccaatcaaagaccattccattcagagattgcaaggtgttgaaacagagacca
aggtttgttccaatgaaaaagcagccacattatataggaggtgatggactggaactcaga
gactatcagttgcacagtttaaattggatggcacattcgtggtgcaaaggcaacagctgc
atccttgctgatgagatgggtcttgggaagaccattcagaccatctctttcctcaactat
atgtttaacgaacaccaactatacgggcccttcttgttggttgtaccgctctctacatta
acctcttggcagagagaaatccaactgtgggcccctcagatgaatatcgttgtttacctt
ggggacataagcagcaggaatatgatcaggacacacgagtggatgcatgttcattctaag
aggctgaaattcaacatcctcctcactacatatgagatacttctcaaggacaagtctttc
ttgggcagtgttaactgggctttcatcggtgtggacgaggcacatcggctgaagaatgat
gactcgctcctctacaagactatgattgactttaagtccaatcacaggctcctgatcaca
ggaacaccactgcaaaattccctcaaagagctctggtccctgcttcatttcattatgcct
gaaaagtttcactcatgggaaatgtttgaggaggaccatggtaaaggacgggattctggc
tacaccagtttgcacaaagagctggaaccttttcttctacgcagagtcaagaaggatgta
gagaaatctctcccagccaaagtggagcagattctcagagtggaaatgagtgctatccag
aaacaatattacaaatggatcctgaccaggaattacaaggctctgagtaaaggtatcaaa
ggtagcacatcgggtttcctgaacatcatgatggagttgaagaagtgctgtaaccactgt
tacctgatcaaacctccagaggaccacgaattccttaacagagctgaagcattacagcaa
cttatccgcagcagtgggaagctggttttattggacaaattgctggttcgtttgaaagaa
cgaggccacagagttcttatcttctcccaaatggttcggatgctggatatccttgctgat
tacctaaggagccgacagttcctctttcagcgattagatgggtctatcaagggcgaaatg
agaaagcaggcattggatcattttaatgcagatggttcagaggatttctgtttcctgtta
tccactcgcgctggtgggcttggaatcaatctggcttcagctgacacagtcgtcatcttt
gactcagactggaacccccaaaatgatcttcaagcccaggccagagcccacaggattgga
caaaagagacaagtgaacatctatcgattggtgactaagggctcagtggaagaggaaata
atagagagagctaagaagaagatggtgctggatcaccttgtcattcagagaatggacaca
acaggaaaaactgtccttcacacaggcactgctccctcgagttcagcaccattcaacaaa
gaagagttgtctgcaatcctgaaatttggtgctgaggagcttttcaaagagccagagggg
gaagagcaggagccccaggaaatggatattgatgaaattctcaaaagagctgagaccaga
gaaaatgatcccggaccttccacagtgggtgaagaactgctgtctcagtttaaggttgca
aacttcaccatgatggaagaagaagaaatagacatggactcagagcgcagccagcggagt
tgggatgacatcatcccagaggcgcagaggaggaggattgaggaggaggagagacagaag
gagcttgaggaaatctacatgctgccgcgtatgaggaattgtgccaaacagagaagcttt
aatgctggtgaggggagaagactgggcaggagcaggagatactcaggttccgacagtgat
tcccactcggaccgaaagaggccaaagaaacgcggtcggcctcggaccattccacgggaa
aatatcaagggcttcactgacgctgagatccggaggtttgtcaaaagttacaagaaattt
ggtggaccactggaacggttggatgcaattgctcgtgatgccgaacttgtggacaagtct
gaacatgaccttaaacgcttggcagaaaccgttcacaacggctgtgtgagaacgttaaga
gaaaacccctgtggaccagaaaaaacttctggaggcagaagagggaaggtgaaaggcccc
acattcaggatctctggtgttcaagtcaatgccaagcttgtcatttctcatgaggaagag
ctagcgccacttcacaaggccatccctgcagacccggaagagagaaaaaagtacatgatt
ccatgccactctaaggctgcgcattttgaccttgattgggggaaagaagatgactccagt
ctgctaataggaatctatgagtacggttatggcagttgggagatgatcaaaatggacccg
gatctcaatctcacacacaaacttctaccagatgaccctgataagaagccccaagcaaaa
cagctccagaccagagcagactacctcatcaagttactgagcaaggaccttgccaaaaaa
gaagctcagaaacaagcagggacagtcaattctcgaaagaggaagccaagaagcaaaaag
agagaaactgtgaaaccatcacagatagatgagatgattaagagtgcatcatcagatcct
ccatcggataaaagatcggatgatgaggatgaaatagatgaggaaatggaggagatgacc
gagaaggctttaagcagacgaaccagatcagacagagagacagtgaaggaagaaaatcag
gaagaggaagatgatgatgaggaagaggaggaggaggaagaggaggaggctcaacaggac
aatggctcttcatctggtgagagggagtataaagaggaaataaagaaagaatgcaaaaag
gagaaaaaggaagacagttgggacagtaaagacaacaaggagccaaaagagagaaaagaa
gtcaaacctttggattcagtccataaacaagaggacagcatggaaaagactgaaagcaaa
gctgaggtcagagaacgactaaaaaaagcatctgatggcccagtcctcataacagcaagt
ggagagaatataccagtgtctgaggagtctgaagaactggaccagaaaacatttagtgtg
tgtaaagagagaatgcggccagtgaaagcagcccttaagcagctggaccgaccagagaag
ggtctctcagagcgtgagcagcttgaacataccaggcaatgtctcatcaagattggagac
cacatcacggagtgtctgaaggagtattccaatcctgacctcatcaaacagtggcgaaaa
aacctgtggatatttgtttcaaaattcactgagttcgacgccaggaaattacataaattg
tataagcatgccatcaagaaaaggcaagagaatgcacaggcaatggagcagaacactagg
agtacaaacactataggttttaaacacacagatatcgaacggctgagggacaactctcac
caggatgacagcagcagggacagttatagctcagacaggcatcagccatcagtgcgttac
catgacagcagcaaggaaagacacagttcggaggcccacaggaaggcagcagagtctaga
aaaagaccctactcctcattaagcaatgggaaagaccacagagaccactaccgaccggac
agcagggaccgagacaggcaggacagacattacagcgatggtaagcaaaggaaattggag
gagttgcgctctagcagagaccaccggccggacctaaaggatctctcccactcggaccag
cgctcgtcttaccgctatcactcggactggcagacggagcagagggcctcggccagcggg
ccccgctctccccgtgaccagcgctcgccttacgactcgcgttccccgctgggccaccgg
tctcctttcgactattcgtccgaccacaagagcacaccggagcaaatctggagcacccgt
aagacataa
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integrated database retrieval system
