Syngnathus scovelli (Gulf pipefish): 125979802
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Entry
125979802 CDS
T08785
Symbol
ythdc2
Name
(RefSeq) 3'-5' RNA helicase YTHDC2 isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sscv03041
]
125979802 (ythdc2)
Enzymes [BR:
sscv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
125979802 (ythdc2)
Spliceosome [BR:
sscv03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
125979802 (ythdc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
Helicase_C
HA2_C
OB_NTP_bind
R3H
Ank_2
DEAD
HA2_N
AAA_19
nSTAND3
ATPase
Ank_4
Ank_5
AAA_22
Radial_spoke_3
AAA_7
SRP54
AAA_23
PhoH
Motif
Other DBs
NCBI-GeneID:
125979802
NCBI-ProteinID:
XP_049594394
LinkDB
All DBs
Position
13:complement(4697082..4746735)
Genome browser
AA seq
1389 aa
AA seq
DB search
MSYFRLTSKNSAKSQKAKKSSTTSRFKDIHINEEVKISINLALERFCYSDQKEMEFPSSL
FSNERAFIHRAAQSLGFISKSKGKGSNRFLTIRKKNLLDSRRSAMLLTLSQTSLNAIHIL
LEKFPITSKEREDLQASSKSKLSVATQHDNSFDMNRPKGCLDSGISVVPPRRRASEFDSF
RRALPVYEHEEQIVRLIGENKVVLIVGETGSGKTTQIPQFLLDDCSKKGECCRIFCTQPR
RLAAITVAERVAAERGETIGKTVGYHIRLESRVSPKTLLTFCTTGVLLRTLMAGDVSLAS
VTHVIVDEVHERDGLTDFLLTKMLDVLEEIPAIKLVLSSASLDVDLFLKYFGAWSCPVFH
LKGRQYEVKQHFLEDILKFTGFNNKEVGKNKEESQRRKETQNLLTKRDKVEEKISIEDGQ
NTHLASSNLFRASNDLDEGGTIKTLNVKGSEQLQPWLVKEMDTCIANIFMIADQEYIVQL
FNLILYEHVNVNYMHSKTGATSLMVTAGRGFLAEMERLLNMGADINLKAGNGWTALDFAI
SLQQLDAVDLLQSSIAIKTKDQNETPMVQCASAEQTSEDQDLLKLYHHIFDDEFVDLDLI
MDLLHMICSTTCDGAVLIFLPGYDDIVSLRDRILYDDTRFSTVSKRYQVFTLHSDMPSIE
QKKAMKKSPPSVRKIILSTNIAETSITINDVVFVIDSGKVKEKSFDTISRISMLKTVWIS
KASALQRRGRAGRCQPGICFHLFSQLRFNNMQEFQVPQLLRMPLQELCLQTKLLTPSPVS
EFLSKAPQPPTAHAVKSAVQILKTIDAMNENEDLTDLGFHLADLPVEPNLGKMVLCAVVL
KCLDPILTIACTLGYRDPFILPVQGSQKRAALQCRKHFASNSFSDHMTMLRIFQAWQKAR
NDGSERSFCEKNYLSNATMDMILGMRTQLLRHLRATGFVRAHGESDIRDVNINSENWAVV
KAALVAGMYPNLLHINPETKLPSSNKEKKVSFHPTSILNQSHNTVDSSSKSSKAFPTEWL
VYDEMSRGNRIPSVRCCTLVTAITVAIFAGGSRHRCSGHHEATFQKDSPADDMSDSETED
ATADLRIDEWLIFQTNHESAELVFDLRNKWHNLFIRRICCPSNSWSQQDEMTVQTLASVL
TTEEHGAGLVQPSGIGQRPCPLVPERLIQNSKGNPKLTRNATDDRLPGVSGQCQRKPHSS
DKSSLSKNYLVEHHLSSSNSTASVSLDSQFDSPFSYFSEKHCTKQVLPQPELLSARYFIM
KSSNLRNIEISQQKGIWSTIPSNETKLTKALQENKVILIFSVQGSGHYQGYARMSSSITY
TSCQDWGFGRLGGVFSVEWLCKENLPFQYTQHILNPLNGNKKVQISRDGQELDAQAGRLL
LSLWERITK
NT seq
4170 nt
NT seq
+upstream
nt +downstream
nt
atgtcctatttccgtctaacttcgaaaaactctgcaaagagccaaaaagcaaaaaaatcc
tctaccacaagtcgcttcaaagacattcacatcaatgaagaagtcaaaatttcaattaat
ttggcactggagaggttttgttacagtgaccagaaagaaatggagtttccttcttcgctt
ttctccaatgagcgagccttcattcatcgtgcagcacagtctctgggatttatttctaaa
agcaaagggaaaggctcaaatcgcttcctcaccataaggaaaaagaatctcctagacagt
cgtaggtctgccatgcttctgacactttcccaaacctctttaaatgccatccacatcctt
cttgagaagtttcctatcaccagtaaagagcgtgaagatcttcaagccagcagcaaaagc
aagctgtctgtcgctacacaacatgacaacagctttgacatgaacaggccaaaggggtgc
ctggatagtggcatttctgtggttcccccaaggaggagggcatcagagtttgacagtttc
cgccgtgcgctgcctgtgtatgagcatgaggaacagatagtcagactaattggagaaaac
aaagtggtactgatcgtaggagagacgggttctgggaaaaccacccagattccacagttt
ctgttggacgactgcagcaagaaaggagagtgctgcagaattttctgtactcagcccaga
cgcctggctgctatcactgtcgctgagagagtggcagctgagaggggagagacaatcggc
aagactgttggctatcacattagactagagagcagggtttctcccaagactcttcttact
ttctgtacgactggagtattactcaggacactcatggctggagatgtcagtctggcatct
gtcacacatgtcattgtggatgaggtgcatgagcgtgatggtctcactgactttttgctc
acgaagatgcttgatgtacttgaggaaatacctgcaataaaactggttctctccagtgct
tctttggatgttgacttgttcctcaaatattttggcgcttggtcctgtcctgtttttcat
ctcaaaggaagacagtatgaagtgaaacaacattttcttgaagacattttgaagttcaca
ggttttaacaataaagaagtgggcaaaaacaaggaagaatcccagagaaggaaggagact
cagaaccttttgacaaagagggacaaagtagaggagaaaatcagtattgaagatgggcaa
aacacacacctggcatcctctaacttattcagggccagcaatgatctggatgaaggaggc
accatcaagacactgaatgtaaaaggctcagagcagttgcagccatggctcgtgaaagag
atggatacttgcattgctaatattttcatgattgcagaccaggaatatattgttcaactc
ttcaatctcattctctatgaacatgttaatgttaactacatgcacagcaagacaggggcc
acatctttgatggtgacagcaggtcgagggttcctcgcagagatggagcggttgcttaac
atgggggcggacatcaacttgaaggcaggaaatggatggactgccttggactttgcaata
agcttacaacaattagatgctgttgatcttcttcagtcttcaattgccattaaaacaaaa
gaccagaatgagaccccaatggttcagtgtgccagtgctgagcaaacctccgaagaccag
gacctgctcaaactgtatcatcacatctttgatgatgagtttgtagacctagatctcatc
atggacctgctgcacatgatctgctcaaccacgtgtgatggtgcggtgctaatttttctt
cctggatatgatgacattgtatcgctcagggaccggattctctacgatgatacaagattt
tccaccgtttccaaaaggtaccaggtgttcacacttcattcagacatgccaagcattgaa
cagaaaaaagccatgaagaagtctccaccgagtgttagaaagattattctttctactaac
attgctgagacaagcatcaccattaatgatgttgtctttgtgattgattctggaaaagtc
aaagagaaatcttttgataccatcagtcgcatctcaatgttaaagacagtctggatttca
aaagccagcgctcttcaacgaagaggaagagccggacgctgccaaccagggatttgcttc
cacctcttcagtcaactaaggttcaacaatatgcaggagtttcaggttccacagctgcta
cgaatgcctctgcaggaattatgtctgcagaccaaattgctgactccctctccagtatct
gagttcttgtccaaggctccacaacctcctacagcacatgctgtaaagagtgctgtgcag
attcttaagacaatagatgctatgaatgagaatgaagacttgactgaccttggcttccat
ttggctgatctacctgttgagcccaatctgggaaagatggtcctatgtgctgtagtgctg
aagtgtctagaccccattttgaccatcgcctgtacattaggttatcgggacccctttatt
ctccctgtccagggctctcagaagagggctgctcttcagtgtcgtaaacatttcgcttcc
aacagcttcagtgaccacatgaccatgctgagaatttttcaggcatggcagaaggctcgc
aatgatggctcagagaggtccttctgtgaaaagaactatctttctaatgccaccatggac
atgattcttggcatgagaacgcagctgctgagacaccttcgtgcaactggctttgtgagg
gcccatggggaaagtgatatacgagatgtgaacatcaactcagaaaactgggcagtggtg
aaggcagccttagttgctggcatgtacccaaatctgcttcatattaaccctgagacaaag
ctgccctctagtaataaggagaagaaagtcagttttcaccctacatccatattgaatcag
tcccacaacacagtggatagttcatctaaatcatcaaaggcctttcccacagaatggctc
gtctacgatgagatgagcagaggcaacagaattcccagtgttcgctgttgtactttggtg
acagccatcactgttgccatatttgcaggcggttccagacatcgttgctctggccaccat
gaagctacttttcaaaaagacagtccagcagatgacatgagtgacagtgagacagaggat
gccactgctgatttgagaattgatgagtggctcatcttccagacaaaccatgagtcagca
gaattggtgtttgacctgaggaacaagtggcataatctgttcatcaggagaatctgttgt
ccgtcaaattcctggtctcaacaagatgaaatgaccgttcaaacccttgcttccgtgctt
acaacagaagagcatggagcaggcttggtgcagccctcagggataggccagcgtccctgt
cctttagtgccagagaggctcattcagaactccaaagggaacccaaagcttacccgcaac
gccactgatgacagattaccaggagtctcaggccaatgtcagaggaaacctcatagcagt
gataagtcttcactgagcaaaaattatcttgtggagcaccatctctcttccagcaattcc
accgcctctgtgagcttggacagtcagtttgacagcccattctcttatttctcagaaaag
cattgcacaaaacaggtgttaccacagcccgaattgttatcagcccgttacttcatcatg
aaaagcagcaacttgaggaacatcgaaatttctcagcaaaaaggcatctggtccacaatt
ccaagtaatgagaccaaactcaccaaagccctccaggagaataaagtcattctcatcttt
tctgttcaaggctctggacactaccagggatatgctcgcatgtcttcatctattacttac
accagttgccaggattgggggtttgggcgattaggaggagtttttagtgtggagtggctc
tgcaaggaaaatctacctttccagtacactcagcatatcctcaacccattgaacggcaac
aagaaggttcaaattagcagagacggacaggagttagatgcccaggcaggcagattgcta
ctgtctctttgggagagaattaccaagtaa
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integrated database retrieval system
