Syngnathus scovelli (Gulf pipefish): 125979871
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Entry
125979871 CDS
T08785
Symbol
sptan1
Name
(RefSeq) spectrin alpha chain, non-erythrocytic 1 isoform X1
KO
K06114
spectrin alpha, non-erythrocytic (fodrin)
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04210
Apoptosis
sscv04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
125979871 (sptan1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
125979871 (sptan1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
sscv04812
]
125979871 (sptan1)
Cytoskeleton proteins [BR:
sscv04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
125979871 (sptan1)
Intermediate filaments
Intermediate filament-binding proteins
125979871 (sptan1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spectrin
EFhand_Ca_insen
SH3_1
SH3_9
EF-hand_1
EF-hand_7
EF-hand_6
EF-hand_8
SH3_2
SH3_3
SH3_10
DUF6437
SCO1-SenC
Motif
Other DBs
NCBI-GeneID:
125979871
NCBI-ProteinID:
XP_049594562
LinkDB
All DBs
Position
13:1549812..1650460
Genome browser
AA seq
2480 aa
AA seq
DB search
METTGVKVLETAEDIQERRQQVLDRYRRFKDLSIMRRQKLEDSYRFQFFRRDADELEKWI
QEKLQIASDENYKDPSNLQGKLQKHQAFEAEVQANAGAIIKLNETGNLMINEGHFAAETI
RTRLEELRRLWDLLLLRTKEKGMHLLQAQKLVQYIRECEDTLGWISDKEAIATSEELGQD
LEHVELLQKKFEEFQTDLAAHEERVNEVNQLATKLRQEDHPEVELIISKQDEVNAAWQRL
KGLAQQRQGKLFGAAEVQRFNRDVDETISWIKEKEQLMASDDFGRDLASVQALLRKHEGL
ERDLAALKDKVNTLGADAEHLQQTHPQNASQIHLKKDELVTNWERIRSLAAERHARLNDA
NRLQRFTADFRDLTSWVTEMKALINADELANDVAGAEALLDRHQEHKGEIDAHEDSFRAT
DEAGQILLNAGHYACEEVKEKLGILTDEKEALLELWELRRQQYEQCMDLQLFYRDTEQVD
NWMSKQEAFLLNEDLGDSLDSVEALLKKHEDFEKSLSAQEEKITALDEFATKLIQNNHYA
CEDVATRRDALLSRRNALHGRAQSRRSALEDSFHLQQFFRDSDELKSWINEKMKTASDEA
YKDPSNLQGKVQKHQAFEAELSANQSRIDALQKSGQALLDGKHYASSEVACRMEEVSSQW
KKLLEATELKGIKLREANQQQQFNRNVEDIELWLYEVEGHLTSEDYGKDLTSVQNLQKKH
ALLEADVTAHQDRIDGIIIQARQFQEAGHFDADNIQKKQDAVVIRYQSLREPMAARKQKL
ADSLRLQQLFRDVEDEETWIREKEPIAASSNRGKDLIGVQNLLKKHQALQAEITGHEPRI
KAVTLKGEAMVEEGHFAGEEVKVKLSELHGRWDILKGKASQRRQDLEDSLQAQQYFADAN
EAESWMWEKEPIVGSTDYGKDEDSAEALLKKHEALMSDLSAYGSSIKALNEQATSCRQQV
APTDDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAY
VKKLDPNQSSSRENLDEHGSIGLRQEQIENQLITKEACSVSMRMKQVEELYGTLLDLGEK
RKNMLEKSCKKFMLFREANELQQWINEKESALTNEEVGSDLEQVEVLQKKFDDFQKDLKA
NESRLRDINRVASELESEGLMTEEIPVVQVQQQETFGAMSGKDEADSKTASPWKNIRLAV
QTTANFNTIKELNNHWKSLQQLAEERSNVLGSAHEVQRFHRDADETKEWIEEKNQALNTD
NYGHDLASVQALQRKHEGFERDLAALGDKVNSLGETAQRLIQSHPEAVDDIQEKCTELNA
AWSSLVGRADQRKDKLGNSHDLQRFLSDFRDLMSWINGIRGLVSSEELAKDVTGAEALLE
RHQEHRTEIDARIGTFQAFEQFGQQLLVQGHYASPEIKQRLEALDLERADLEKAWVQRRM
MLDQCLEFQLFSRDCEQAENWMAAREAFLASDDKGDSLDSVEALIKKHEDFDKAINVQEE
KIAALQSFANQLIGADHYAKPEIFIRRNEVLDRWRRLKTQMIEKRSKLGESQTLQQFSRD
VDEIEAWISEKLQTATDESYKDPTNIQLSKLLVSSKHQKHQAFEAELHANADRIRGVIDT
GDTLIQRGACAGSEDAVKVRLGALDEQWQFLVNKSAEKSQKLKEANKQQNFNTGIKDFDF
WLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNGQADSLMVSNAFDT
SQVKDKRGAVNSRFIKIQNMAASRHGKLNESHRLHQFFRDLDDEESWIKEKKLLVSSEDY
GRDLTGVQNLRKKHKRLEAELGAHEPAIKSVLDTGKKLSDDNTIGQEEIQQRLSQFVDHW
KELKDLSGARGQRLEESLDYQQFVANVEEEEAWINEKLNLVGGEDYGDTLAAVQGLLKKH
EAFETDFTVHKDRVSDVCANGEDLIKKNNHHVDSITFKMSALQGKVSELDRAAAQRKAKL
DENSAFLQFNWKADVVESWIGEKENSLKTDDYGRDLSSVQTLLTKQETFDAGLQAFQQEG
ITNITALKDQLLAAKHVQAKAIEVRHAALMKRWNQLLSNSEARKMKLLESQEHFRKVEDL
FLTFAKKASAFNSWFENAEEDLTDPVRCNSLEEIRALREAHEAFRSSLTSAQTDFNQLAE
LDLQIKNYQVVSNPYTWFTMEALEETWRNLQKIIKERELELQKEQRRQEENDKLRQEFAQ
HANAFHQWLQETRTYLLDGSCMVEESGTLESQLEATKRKHQEIRAMRSQLKKIEDLGAAM
EEALILDNKYTEHSTVGLAQQWDQLDQLGMRMQHNLEQQIQARNTTGVTEEALKEFSMMF
KHFDKEKSGRLNHQEFKSCLRSLGYDLPMVEEGEPDPEFEAILDTVDPNRDGNVSLQEYM
AFMISRETENVKSSEEIESAFRALSTENKPYVTKEELYQNLTKEQADYCLSHMKPYLDNK
GRELPSSFDFVEFTRSLFVN
NT seq
7443 nt
NT seq
+upstream
nt +downstream
nt
atggaaacaactggtgttaaagttctggagactgctgaagacatccaagagcgccggcag
caagtgctggatcgctacaggcgcttcaaagacctgtccattatgcggcgtcagaagctg
gaagactcttaccgctttcagttcttccgccgtgatgcagatgagctggaaaagtggatc
caggagaagttgcaaattgcctctgatgagaactacaaggacccctctaacctgcagggt
aagctgcagaaacatcaagcctttgaggctgaagttcaagccaatgctggagccataatc
aaattgaatgagactggaaacctgatgatcaacgaaggccattttgccgctgagaccatt
agaactcgacttgaggaactccgacgcctatgggatcttctgctgctaagaaccaaggag
aagggaatgcatctgctgcaggcccaaaaactagtccaatacatccgtgagtgtgaagac
accctgggctggatcagtgataaggaagctatagcgacatctgaggagctaggccaggac
cttgaacatgtggagcttctgcagaaaaagtttgaggaatttcagacagacttggcagca
cacgaggaacgagtgaatgaagtgaaccagttggcaaccaagctgagacaagaagaccat
cctgaagtagagctaatcatttccaagcaggatgaggtcaatgccgcctggcagcgattg
aagggcctggcccagcaaagacaagggaagctgtttggagctgctgaggttcagcgtttt
aacagggatgtggatgagaccatcagctggattaaggagaaggagcaacttatggcctct
gatgactttggacgtgatctggccagtgtacaggctcttctgcgtaaacatgagggtcta
gagagagacctcgctgcactaaaagataaggtcaacacactaggtgctgatgcagagcat
ctgcagcaaacacatccccaaaatgcctcccagatccacctaaagaaagatgaactcgtc
acaaactgggagcgcattcgcagtctggctgctgagcgtcatgcccgtcttaatgatgcg
aacaggttgcaacgtttcactgcagacttcagagatcttacaagctgggtaacagagatg
aaggccctaatcaatgctgatgaacttgctaatgatgtagctggagccgaggccctgcta
gaccgccatcaagagcataaaggagagattgatgcccatgaagatagttttagagccact
gatgaagctggtcagattttgcttaatgcaggacattatgcctgtgaggaagtcaaggaa
aagctgggcatccttactgatgagaaggaggctctgttggaattgtgggagcttcgcagg
cagcagtatgagcagtgtatggacctacaactattttacagggatacagagcaagtagac
aactggatgagcaaacaagaggcttttctcttgaatgaagatcttggtgactccctggat
agtgtagaggcactgcttaagaagcacgaagactttgaaaagtctctcagtgctcaagaa
gagaagattactgctttagatgaatttgcaacaaaacttatccagaacaaccattatgct
tgtgaagatgtggctacccgcagagatgcgcttctcagtcgtcgaaatgccctgcacggg
cgagctcagtctcgacgttccgctttggaggattctttccatctacaacaatttttcagg
gattctgatgagctgaagagctggatcaatgagaagatgaagacagctagtgatgaagct
tacaaggatccctcaaacctacaaggcaaggtgcagaaacaccaggcttttgaagcagag
ctatcagctaaccagagccgcattgatgctttgcaaaagtctggccaagcattgcttgat
gggaaacattacgcatcctctgaggtggcctgtcgtatggaagaggtcagctctcagtgg
aagaaactgctggaagccaccgagctgaaaggtatcaagctccgcgaggccaaccaacaa
cagcagtttaacaggaatgtagaggacattgagctgtggctgtatgaggttgagggtcac
ttgacctcagaggactatgggaaagaccttaccagtgttcagaacctacagaagaagcat
gcacttttagaggcggatgtaactgcacaccaggatcgaattgatggaataataatccag
gctcgacagtttcaagaggctggacactttgatgctgacaacatccagaagaaacaggat
gctgtagtcattcgttaccaatccctccgtgagccaatggctgcacgcaaacagaaattg
gcagattctcttcgtctccaacaactttttagagatgttgaagatgaggagacttggata
cgtgagaaagagcccattgctgcctcttcaaaccgaggcaaagatttaattggtgtccag
aacctactgaagaaacaccaggctctccaggccgagatcactggtcatgagcctcgtata
aaagcggttaccttgaaaggagaggccatggtggaagaaggacactttgcaggtgaagaa
gtgaaagttaaactctctgagctgcatggacgctgggacattctgaagggtaaagcctct
cagagaagacaggatcttgaggactctctacaggcccaacaatactttgctgatgccaat
gaagcagagtcttggatgtgggagaaagaacccattgtgggaagtacagactatggcaaa
gatgaagactccgctgaggctcttttaaaaaaacacgaggccctgatgtctgacttgagt
gcttacggaagtagcatcaaagcactaaatgaacaggcaacatcttgcaggcagcaagtg
gcaccgactgatgatgagactgggaaggaacttgtcctggccctatatgattaccaggag
aagagcccacgtgaagtaaccatgaagaaaggtgatattctcacccttctaaacagcacc
aataaggactggtggaaagtagaggtgaatgaccgccagggatttgttccagctgcctat
gtgaagaagctggatcccaatcagtcctcttctcgagaaaacctggatgaacatggaagc
attggacttcgccaagaacaaattgagaatcaactaatcaccaaagaagcctgcagcgtg
tctatgcgcatgaaacaggttgaagagctatatggaacactattagatcttggggagaaa
cgcaagaacatgttggagaaaagctgcaagaagtttatgctgtttcgggaagcaaatgaa
cttcagcagtggatcaatgagaaggagagtgcacttacaaatgaagaggtgggctcagac
ctggagcaggtggaggtcctacagaagaagtttgatgatttccagaaggaccttaaggcc
aatgagtcacgtctgagggacatcaatagagtggcctctgagctagaatctgaaggccta
atgactgaggaaatacctgtggttcaagttcagcaacaagaaacatttggtgcaatgtct
ggcaaggatgaagctgattcaaaaactgcatctccatggaagaacatacgcttggctgtt
caaacaacggctaactttaatacaatcaaggaattgaataaccactggaaatcactacag
cagttggctgaagaaaggagcaacgttttgggtagtgcccatgaagtgcagcgattccac
agagatgctgatgaaactaaagaatggattgaggaaaaaaaccaggctctcaacacagac
aactacggtcacgatttggcgagtgttcaagctttgcagcgcaagcatgaaggctttgag
agagacctggcagccttgggtgacaaggtgaactcccttggagagacagcgcaacgtcta
atacagtcccacccagaagcagtggatgacattcaggagaagtgtactgagctcaacgct
gcctggagcagcctcgtgggacgcgctgaccagcgaaaagacaaactcggaaattcacat
gatctgcaacgctttttatctgatttcagagacctcatgtcctggattaatggtatccgt
ggacttgtttcttctgaggagttagccaaggatgtgactggagctgaagctcttcttgaa
aggcatcaggaacatcgcacggagatagatgctcgtattggtactttccaggcctttgag
caatttggacagcagctgctagtgcaaggccattatgcaagtcccgagatcaaacaaaga
ctcgaggctttagacttggaacgagctgacctggaaaaggcctgggtacagcgtcgcatg
atgctggaccagtgcctggagttccagctctttagcagggactgtgaacaggctgagaat
tggatggcagctcgtgaagccttccttgcaagcgatgacaagggagactcccttgatagt
gtagaggcactaatcaaaaagcatgaagactttgataaagctattaatgtgcaggaagag
aaaattgctgctctgcaatcgtttgccaatcaactaattggagctgaccattacgccaaa
cctgagatcttcattcgacgcaatgaagttcttgacaggtggcgtcgactgaaaacccag
atgatcgaaaagcgttcaaagctaggtgaatcccaaaccctgcagcagttcagccgagat
gtggatgaaatagaagcttggatcagtgagaaactgcaaactgcgactgatgaatcctat
aaggaccctaccaacattcagctatccaagcttctggtaagtagtaaacatcagaagcac
caagcatttgaggcggagcttcatgccaatgctgaccgaatccgtggggtcatagatact
ggtgacacactcatccagagaggtgcctgtgctggcagtgaggatgcagtcaaggtacgc
cttggtgccttggatgagcaatggcagttccttgtcaacaaatctgctgaaaagagccaa
aaactcaaagaagccaataaacaacagaactttaacacaggcatcaaagactttgacttc
tggctctctgaggtggaagcacttcttgcttcagaggactatgggaaagatctggcctca
gtcaacaacctgctgaaaaaacaccagttgttggaggctgacatttctgctcatgaggat
cgtctgaaggatctgaatgggcaggctgacagtctgatggtcagcaatgcatttgatacc
tctcaagtgaaggacaagcgtggtgcagtcaatagtcgtttcatcaaaatacagaacatg
gcggccagccgccatggaaaactcaacgagtctcaccgcctgcatcagttcttcagggac
ctggatgatgaggagtcttggatcaaagagaagaaattgcttgtaagttcagaagactat
ggccgagacttgactggagtacaaaatctgaggaagaaacataagaggcttgaggctgaa
ctgggagcccatgagccagccattaagtctgtgctggatactggaaagaagctgtctgat
gacaacaccattggtcaggaggagatacagcagagactgtctcagtttgtagatcactgg
aaagaactgaaagacctatctggagcaaggggtcagaggctggaggaatcgttagattac
caacaatttgtggcaaacgtggaagaagaagaagcatggattaacgagaaattaaatttg
gttgggggtgaagactatggagacacgctggctgctgtgcagggcttgcttaaaaaacat
gaagcatttgaaacagacttcactgtgcacaaagacagagtcagcgatgtttgtgctaat
ggagaagatctcattaagaagaacaaccatcacgtggacagtatcactttcaagatgtca
gctctccaaggcaaagtatcagagcttgatagggcagctgctcagaggaaggcaaagctg
gatgagaactctgcctttctgcagttcaactggaaggccgatgtggtggagtcttggatt
ggagagaaagagaacagccttaaaactgatgattatggcagagacctgtcgtctgtacag
actctactcaccaaacaggagacatttgatgctggacttcaagcattccagcaggagggc
attaccaatatcacagctctcaaagaccagttgttggctgccaagcatgtccaagcaaaa
gccattgaagtccgtcatgctgctttaatgaagcgttggaaccaattgctgtccaactcg
gaggctcgcaagatgaagcttctggagtctcaagagcattttcgaaaggttgaggacttg
tttcttacatttgccaaaaaggcatcagcgtttaacagttggtttgagaatgcagaggag
gatctgacagacccagtgaggtgcaattctctggaagagattcgtgcactgcgtgaagcc
catgaggccttccgctcctcactgacctcagcccagacagatttcaaccagctcgctgaa
ctggacctgcagatcaagaattaccaggtggtgtccaacccctacacctggtttacaatg
gaggctttagaagaaacttggagaaacctgcagaagataatcaaggagcgagaactggaa
ctgcagaaagagcagcgaagacaggaggagaacgacaagttgcgtcaagaatttgcgcag
catgcaaatgctttccaccaatggctgcaggagaccagaacatatcttctggatgggtca
tgtatggtggaagagtcaggtactcttgaatctcagctggaggccactaagcgtaaacac
caagaaattcgagccatgcggagccagctaaagaagattgaagacttgggtgcagctatg
gaggaagccttgatcttggacaacaagtacacagagcacagcacagtgggtctggctcag
caatgggatcagctggaccagctgggaatgaggatgcagcataacctggagcaacagata
caagcaaggaacactactggggtgaccgaggaggcactaaaggagttcagcatgatgttc
aaacactttgacaaggagaaatctggacgtctaaaccaccaggagttcaagtcatgcctg
cgttcactaggttatgacctacccatggttgaagagggtgaacctgatcctgaatttgag
gcaatactcgacactgtagatccaaacagggatggtaatgtgtcattacaagagtatatg
gccttcatgataagccgtgagacagaaaatgttaaatccagtgaagagattgagagcgcc
ttccgagctctaagtaccgagaacaaaccctacgttactaaagaagagctctaccagaac
ctgaccaaggagcaggcagactattgtctctcgcatatgaagccctaccttgataataag
ggccgtgagctgccatcatcatttgactttgttgaattcacccgctctctctttgtcaac
taa
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integrated database retrieval system
