Syngnathus scovelli (Gulf pipefish): 125979909
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Entry
125979909 CDS
T08785
Symbol
ddx54
Name
(RefSeq) ATP-dependent RNA helicase DDX54
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
sscv03009
]
125979909 (ddx54)
Enzymes [BR:
sscv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
125979909 (ddx54)
Ribosome biogenesis [BR:
sscv03009
]
Eukaryotic type
Pre-60S particles
Helicases
125979909 (ddx54)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
ResIII
DNA_pol3_chi
Motif
Other DBs
NCBI-GeneID:
125979909
NCBI-ProteinID:
XP_049594731
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All DBs
Position
13:11077435..11082776
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AA seq
857 aa
AA seq
DB search
MAQKKKKLTKKKKPQAGKELDADSDVGVFEVDVQVKDDDSPRGKLLPFPAPSDCLSDVEP
DTRELVRAQNKKKKKSGGFQSMGLSYPVYKGVMKKGYKVPTPIQRKTIPVILDGKDVVAM
ARTGSGKTAAFLVPMFEKLKAPQAQTGARALILTPTRELALQTMKFTKELGKFTKLKTTL
ILGGDSLEEQFAALHENPDIIIGTPGRLMHVVQEMNLKLNHVEYVVFDEADRLFEMGFAE
QLQEIIRRLPDIRQTLLFSATLPKLLVEFARAGLTEPVLIRLDVDSKISDQITLSFFHLR
VDDKPALLLHLLRNVVKPQEQTVVFAATKHHVEYIKELLSLEGLDCAYIYSALDQTARKI
NIGKFVHRKAMVLVVTDVAARGIDIPLLDNVINYNFPSKSKLFLHRVGRVGRAGRSGTTY
SMVCADEVPFVYDLHLFLGRPVQLATPEQSADLDGIFGRVPQSILDDAVVSLITAHENSL
DLQNLHHVSENAYKQYLKSRPNPSPESIRRVKNLDLSCMAVHPLLRSGLEKSELERLNMV
DAIKGYRSKSTIFEINSKSKTLATEVMRAKRSKDSRLVDRFSKHRESLAAERLLHNPVSV
PAGEDAADSGEDDALQEVFSEVVGGKRKSHQDGGFERPKKKRKKRVAAVKDEEYYIPYRP
KDFNSERGLSLGGDGSTFETQASSAVLDLMGDEGERLNQHKKIMKWDRKRKRFVTETGKD
DQKNRIKLEGGQTIHKKKNRKNFYEEWKKKYKIDDGTAGSDGEGGGGGGGGGGRRPPKGR
GRSSTGSQFLANGSRVRSELKTSQQILKERKKQQKHHFLQSGGLKNIRAKNKKWLGDVKK
SGFGRGSQKKGKMRKRM
NT seq
2574 nt
NT seq
+upstream
nt +downstream
nt
atggctcagaagaagaaaaagctaaccaagaagaagaaaccgcaggctggcaaagagctg
gacgctgactctgacgtcggagtcttcgaagtggatgtccaagtcaaagacgatgattcc
cccaggggcaagctgttgcccttccccgccccttcagactgcctgtctgatgtggaaccg
gacaccagggagctggtccgagcccagaacaagaagaagaaaaagtctggaggatttcag
tccatgggcctgtcttaccccgtctacaagggcgtcatgaagaagggttacaaggtgccg
accccaatccaaagaaagacaatcccggtcattctggacggcaaagacgttgtggccatg
gctcggacaggcagcggcaagacggccgctttcctggtgcccatgtttgagaagctgaag
gcgccgcaagcccagacgggtgccagggccctcatcctgacccccaccagagagctggcc
ctgcagaccatgaagttcacaaaagagttggggaaattcacaaaactgaagacaaccctg
atccttggtggagacagtttggaggagcagtttgctgcgcttcacgagaaccccgatata
atcatcggtacccccggccgtctcatgcacgtcgtccaggaaatgaacctgaagttgaat
cacgttgagtacgtggtgttcgacgaggccgacaggttgtttgagatgggctttgccgag
cagctccaggagatcatcaggcggcttcctgacatcagacagacgttgttgttctctgcc
acgctgcccaaacttctggtggagtttgccagagctgggttgacagaaccagtgctgatt
cgtttggatgtggactccaagatcagtgaccagatcacgctgtccttctttcatttgcga
gtggatgacaagccggcgctgctgctccacctcctgaggaacgtggtcaagcctcaggag
cagacggtggttttcgccgccaccaaacatcacgtggagtacatcaaggagttgttgtcg
ttagaagggctggactgcgcttacatctacagcgccctggatcagacggccaggaagatc
aacatcgggaagtttgtgcaccgcaaggccatggtgctcgttgtgacggacgtggccgct
cgcggtatcgacatcccgctcttggacaacgtcatcaactacaactttccctccaagtca
aagctcttcttgcacagagtcggtcgtgtgggcagagcggggcgcagcggaacgacctac
agtatggtgtgtgcggacgaggtgccttttgtttatgaccttcaccttttcctgggaaga
cccgtacaattggccaccccagagcagtcagcagatttagacggcattttcggtcgcgtg
cctcagagcatcctggacgacgcagtggtcagcctgatcacggcgcacgagaactccctg
gacctgcagaacctgcaccacgtctcggagaacgcctacaagcagtacctcaagtctcgg
cccaacccctcgccggagtccatcagacgagtgaagaacctggacctgagctgcatggcc
gtccatcctttgctgaggtccggattggagaaaagtgagctggaacgtcttaacatggtt
gacgccatcaagggctacagatccaaatctaccatctttgaaatcaactccaagagcaag
acgctcgccactgaggtgatgcgagccaagcgctccaaagactcacggctggtggacaga
ttcagcaagcacagagaaagtctggctgcggagaggctccttcataaccccgtcagtgtc
ccagccggagaagacgctgccgactcaggcgaggatgacgcgttacaggaggttttctcc
gaggtggttggtgggaagaggaaaagtcatcaggacggaggattcgagcgcccaaagaaa
aagcgaaagaaacgtgtggcggcggtcaaagatgaggagtactacattccttacagaccc
aaagacttcaactcggagagagggttaagtttgggcggagacggcagcacctttgaaacg
caagcgtcctccgccgtcctcgacctcatgggagacgaaggagaacgactcaaccagcac
aagaagatcatgaaatgggaccgaaagaggaagcgcttcgtaacagaaacgggcaaagat
gaccagaagaacaggattaaactcgaggggggtcaaaccatccacaagaagaagaacagg
aaaaacttttatgaggagtggaagaagaagtacaagattgatgacggaaccgcgggctcg
gatggggaaggaggcggaggaggaggaggaggaggagggaggaggccaccgaaaggtcgc
ggtcgcagttctacaggctcccagttcctggccaacggtagcagggtgcgctcggagctc
aaaaccagccagcagatcctgaaggagcgcaagaagcaacagaagcatcacttcctacag
agtggaggcctgaagaacatacgcgccaagaacaagaaatggttgggagacgttaagaag
tccggcttcggtcggggcagccaaaagaagggcaagatgaggaagaggatgtga
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