Syngnathus scovelli (Gulf pipefish): 125980011
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Entry
125980011 CDS
T08785
Symbol
ric1
Name
(RefSeq) guanine nucleotide exchange factor subunit RIC1 isoform X1
KO
K20476
RAB6A-GEF complex partner protein 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125980011 (ric1)
Membrane trafficking [BR:
sscv04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Rab associated proteins
125980011 (ric1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIC1
Beta-prop_HPS5
PEP5_VPS11_N
Motif
Other DBs
NCBI-GeneID:
125980011
NCBI-ProteinID:
XP_049594908
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All DBs
Position
13:11027506..11042208
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AA seq
1446 aa
AA seq
DB search
MYFLTGWPRRLMCPLKSAEEPFHIQPSSQRFYFALLSETQLSIWFSRPSVLIASYVESAK
AVAQFGFYQKAEWKPDDSMIAVATAKGYVLLFSVLGAGDDKNLYEPIYPKGSPRVKVTPG
YKEEQCAPALSLEIKKPVDLEAPVTSLQSLQEELLVCTADGYLHVLHWDGLGGNGRKTIC
LTAIPFSLDLQSARGGPSLDLEGVHIRCVEYCETLDGFAVVLSDGRLGFITPLSSTITAD
QLQGVWAADVSDGTCVAVNNKYRLMAFGCASGSVLVYMIDTTTGSMQLSHKLELTPKHYP
DIYNKTGPVKLICWSPDYSVAMVTWECGGLSLWSVFGAQLICTLGEDFAYRSDGTKKDPL
KISSMCWGAEGYHLWVLPTKPVRRRTQEEQDKEEMTEEAQTTTPSPQAGILQFHFIKSAL
TVNPCTSNQEQVLLHGEDRLYLTCGDTAQAHSSADTQHQQRLNPHDESPPHPHQHLNSPL
SQGLSTLLGHKHWHVVQIHSTYLESNWPIRFAAIDTAGQCMAVAGRRGFAHYSLYTRKWK
LFGNITQEQNMTVTGGLAWWNDFVVVACYNFIDQQEQLRLYQRSSNLDNAFASVTKLHSD
TLLLNVFRDVVILFRADCSICLYSIERRSNSPNPTVSVELLQEVSMSRYIPHPALVVSVT
LTSVRTETGITLKAPQQACMAESIMLNLAGQLIMLQRDRSGPQVREKETPANNKKLLPFC
PPVVLAQCVENVWTTCRSDRKKRHLLEALWLSCGEAGMKVWMPLFPRDHRKPHSFLSRRI
MLPFHINIYPLAVLFEDALVLGATNETVLYDGLQGSSEPLEALFPFCTVERTSQIYLHHI
LRQLLVRNLGEQALMLAQSCASLPYFPHVMELMVHVVLEEEATSREPIPDPLLPTVAKFI
TEFPLFLQTIVHCARKTEYALWNYLFAAVGNPKDLFEECLMAQDLDTAASYLIILQNMEV
PAVSRQHATLLFNTALEQGKWDLCRHMIRFLKAIGSGEMETPPPTPTTQEPSSTGGFEFF
RNRSISLSQSADSVSTGKFSLQKTFSMPSGSSNKGRDGECAENMYIDMMLWRHARHLLEQ
VRLRDLGCFSAQLGFELIGWLCRERNRVARVDDYVLALKKLHKDFLWPFPVIPVANLSSP
LKNGRCRPVLNTLLLKSQSADSLLNSDMDTAPLPAAPTNYTWMDGLSQRSKDMDAASSSS
NRHSPQTHDAFLSLLTNKVEEYSIGSATDLTESSSVADGDWTMVDENSSTLNLSQAELEH
ISMELANKGPHKSQVQLRYLLHVFMEAGCLEWCVIIGLILRDANVIKQAIAFLASPEVPV
ETVQSVRNGLLAVDAWTSTDCLGYKAFLNVIQPHLQQLLASAPAEQVQPEAFQPSACQSA
KLSAGEGPGGVASARPEDGGGRCVAAAPLGLLTLPSLESKPVNEDRTPDQSEEQTEEEGA
YDCTLS
NT seq
4341 nt
NT seq
+upstream
nt +downstream
nt
atgtatttcctcaccggctggccacggaggctcatgtgcccgctgaagagcgcggaggag
cccttccacatccagcccagttcgcagcgcttctacttcgccctgctttctgaaacgcag
ctcagcatctggttcagtcggcccagcgttttgattgcgagctacgtcgagtccgccaag
gcagtggcacagtttggattctaccagaaggccgaatggaaaccggacgactccatgata
gccgtggcgaccgccaaaggctacgtcctcttgttctctgtattgggcgctggggatgat
aagaacctctacgagccaatctacccaaagggcagcccccgtgtgaaggtgaccccgggt
tacaaggaggagcaatgcgcccccgctttgtcgctggagatcaagaagcctgtcgatctg
gaggcccccgtcaccagtctccagtccctccaggaggaactactggtgtgcacggcagac
ggctacctccacgtgctgcattgggacggcctgggcggcaacggacgcaagaccatctgc
ctcaccgctatccccttctcgctcgacctgcagtctgccagaggtggcccgtctctggat
ctggaaggtgttcatatccgctgtgtggagtactgtgagacgctggacggcttcgccgtg
gtgctcagcgacggccgtctgggcttcatcacgccgctcagcagcaccatcactgcggac
cagctgcagggagtctgggccgcggatgtgagcgacggcacatgcgtggctgtcaacaac
aagtacagactgatggcatttggctgcgccagcgggtcggtgctggtttacatgatcgac
actacaaccgggtctatgcagctctcccacaaactggaactgaccccaaaacactaccca
gacatctacaacaagactggtccagtgaagctcatttgctggtcgcctgactacagcgtc
gccatggtgacgtgggagtgcggcggcctatcgctgtggagcgtctttggcgctcagctc
atctgcacgctgggagaggactttgcgtatcgatctgatggcaccaagaaggatccactt
aaaatcagctccatgtgctggggagcagaaggctaccacttgtgggtgctgcccaccaag
ccggtgaggaggcgaacacaggaggagcaggacaaggaggagatgacggaggaagcgcag
acgaccacgccgtcgccgcaagctggcatcttacagtttcacttcatcaagagcgccctc
accgtcaacccctgcacgagtaaccaggagcaggtgctgcttcacggcgaggatcgcctc
tacttgacttgtggcgacacggcgcaggcccacagcagcgccgacacgcagcatcagcaa
cgcttgaaccctcacgacgaaagccccccgcaccctcaccagcacctcaactccccccta
tctcagggactcagcactttactgggacacaagcactggcacgtggtccagattcatagc
acatacttagagagcaactggccgatacggtttgcagccatagacacagcagggcagtgc
atggctgtagcaggaaggcgaggctttgcacattactccttgtataccaggaaatggaaa
ctgtttggaaacatcactcaggagcagaacatgacggtgacaggcggtctggcttggtgg
aacgactttgtcgtggtggcctgttacaatttcatcgaccagcaagagcagctgagattg
tatcagcgctcgtcgaacctggacaacgcctttgcgtcggtcaccaaactgcattctgat
acgctgctgctcaacgttttccgggacgtggtcatcctgttccgggccgactgctccatc
tgcctctacagcatcgagaggaggagcaatagtcctaacccgacagttagtgtggagctg
ctccaggaagtatccatgtcccgctacatcccccaccccgccctggtggtctctgtcacg
ctcacgtctgtgcgcactgagacgggcatcacgctgaaagccccgcagcaggcctgcatg
gcagagagcatcatgttgaatctggccggccagttgatcatgctacagcgggaccgatcc
gggccgcaggtacgagagaaggagacgcctgccaacaacaagaagctgctaccattctgc
ccaccggtggtgctggcccagtgcgtggagaacgtgtggaccacctgtcggtcggacagg
aagaagcgccacctgctggaagccttgtggctctcctgcggcgaagctggcatgaaggtg
tggatgcctctgttcccgcgggaccaccgcaagccgcactcgttcctgtcgcggcgcatc
atgctgcccttccacatcaacatctacccgctggccgtgctgttcgaggacgcgttggtg
ctgggcgccaccaacgagactgtgctgtacgacgggctgcagggttcctccgagccgctg
gaggcgctgtttcctttttgcacggtagagaggacctcgcagatctacctgcaccacatc
ctcaggcagctgctggttcgcaacctgggcgagcaggcgctgatgctggctcagtcgtgc
gcctcgctgccgtacttccctcacgtcatggagctgatggtgcacgtggtgctggaggag
gaggccacgtcgcgggagcccatccccgacccgctgctgcccaccgtggccaagttcatc
acagagttcccgctcttcctccaaactatcgtgcactgtgcccgcaagaccgagtacgcc
ctgtggaactacctattcgccgccgtggggaaccccaaggatcttttcgaagagtgtctc
atggctcaagacttggacacggccgcctcgtacttgatcatactgcagaacatggaggtt
ccggccgtgagcagacagcacgccacgctgcttttcaatacggcactggagcagggcaag
tgggacctctgccgtcacatgatccgcttcttgaaggcgattggttcaggggagatggag
acaccacccccaacgcccactacgcaggagcccagctcaaccggcggcttcgaattcttc
cgaaatcgcagcatcagtttgtcccagtctgctgattcagtaagcacgggcaagttcagc
ttacagaagaccttcagcatgccttccggatcctcgaacaaagggcgggacggcgagtgc
gccgagaacatgtacatcgacatgatgctgtggcgccacgcccgccacctactggagcag
gtgcgcctccgcgacctgggctgcttctcggcccagctgggtttcgagctcatcggctgg
ctgtgccgcgagcgcaaccgcgtggcccgcgtggatgactacgtcttggccctaaagaaa
ctccataaggacttcctgtggccgttcccggtcattcccgtggccaacctcagctcgccg
ttgaagaatggtcgatgtcgccctgtgctgaacacgctgcttctcaagtcccagtcggcc
gacagcctgctgaacagcgacatggacacggcgccccttcccgccgctcccactaactac
acctggatggacggcctcagtcagaggagcaaagacatggacgccgcctcgtcctcatcc
aaccgacactctccgcagacgcacgacgcctttctgtcgcttctcaccaacaaagtggag
gagtacagcatcggctcggccacagacctgacagagagcagctcggtggcggacggcgat
tggacaatggttgacgagaactcgtccactctaaacctgagccaggcagagctggagcac
atctccatggagctggccaacaaagggccgcacaagtcgcaagtgcagctcaggtacctg
ctgcacgttttcatggaggcgggctgcctggagtggtgcgtgatcatcggcttgatcctg
cgtgacgccaatgtcatcaagcaggccatcgcgttcctggccagccctgaagttcctgta
gaaaccgtgcagagcgtgcgcaacggattattggctgtggacgcctggacctccactgac
tgcctgggctacaaagcgttcctcaacgtcatccagcctcacctgcagcagctgttggcg
tcggcgcccgccgagcaagtgcaaccagaagccttccaaccttccgcctgccagagcgcc
aagctcagcgccggcgaaggcccggggggcgtcgcttcggcccggcccgaggacggcggt
ggaaggtgcgtggccgccgccccactcggactgctgacactcccttctctggagtccaaa
ccggtcaacgaggacaggacccccgatcaatcggaggagcagacagaggaggagggcgca
tacgactgcaccttgtcctga
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