Syngnathus scovelli (Gulf pipefish): 125980030
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Entry
125980030 CDS
T08785
Symbol
rc3h2
Name
(RefSeq) roquin-2 isoform X1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125980030 (rc3h2)
04121 Ubiquitin system [BR:
sscv04121
]
125980030 (rc3h2)
Transcription factors [BR:
sscv03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
125980030 (rc3h2)
Ubiquitin system [BR:
sscv04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
125980030 (rc3h2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
zf-RING_2
zf-CCCH
zf-CCCH_4
zf-C3HC4_4
zf_CCCH_4
zf-C3HC4_2
Prok-RING_4
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
125980030
NCBI-ProteinID:
XP_049594946
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All DBs
Position
13:10041267..10055341
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AA seq
1120 aa
AA seq
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MPVQAAQWTDFLSCPICYNEFNGSSQQPVSLGCSHTVCRTCLHKLHRKACPFDQTPISTD
IDLLPVNCALLKLVGAQVPDVQPVSLSSDKDVGHYEACRVCVEELALYLKPISGTKGVAP
PSPSALSRPMQRKLVTLVNCQLVEEEGRVRAVRAGRSLGERTVTELILQHQNPQQLSANL
WAAVRARGCQFLGPAMQEDALKLVLLALEDGSALSRKVLVLFVVQKLEGRFPQASKTSIG
HVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVHIAMEAGLRISPEQW
SSLLYGDLVHKSHMQSIIDKLQSPESFAKSVQELTIVLQRTGDPANLTNLRAHLELLANI
DHNTDDVAPSWEELENVMLAIKLVVHGLVEFIQNFSKKSHETPQVHQVNSKYKTSMCRDL
RHQGGCPRGTNCTFAHTQDELEKFRLRNKKSGSVSRAFPPSGGKTFMLEGTVHTDGAAGV
GEEDVLTDGDAHSQLISKGADNMEGIKTAVPSESIGASGSNGLSGTSMTLLGSAEQKSMS
PPITPVSHSSASSPLTTLGRVVDGSGGPAPKHGGPLMLRAPHPSQASELFYQEQQSPYET
ARYQPNGSYYPSPLHPPHKPCMARFLRSSNVPESSLPPPSSFHGEPQIPHQAPSSPSAGY
PPRERMRPAVFHHHHHPGQPQYGPLTSAHGVYTPLYDSRRVWRPQLYHREDARSNSLPPE
VLHSSVYQPPLRERFNSLDSNFCSGSEHRAALHREYGRVPLVYDDPFRRKQEQWAHHHHH
HYHHHHSTSRPSQPSAIFNIDLGPEHVESSGGRCMGCRFRGEESLAHYSPWSCGSTVGPC
LSPFEPEAITPAASHSALEQSESDGCGGGVVSSGGVAKRWLHSLDHYRRVNEEDPIIPFS
EGPIISKWGAISRAARSGYHTTDPVQASACQGGASTMPVNFKDYNCHLDHSEYRWSSRGS
DSSSHSSFLESEQLCRHSSSEKIACEPQSHQTAFSQDREHKESERDIELELCALDMEDTE
PQDIKSQDSLELAYSEDASHLLPPNCSSPLEEQHAEDLPPDRMDTYLLKKMAFRKSLSPV
GLVSGGLAVGKLVLRTGTPRPGGGDSCPETPGAEMLLSGS
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgcaggcggcccagtggacggacttcctgtcctgtcccatctgctacaacgag
ttcaacggcagcagccagcaacccgtcagcttgggttgctcgcacacggtttgccgaacg
tgcctccacaagctacaccggaaagcctgcccgttcgaccagacgccaatcagcacggat
atcgacctgctgcccgtcaattgcgctctcctgaagctggttggagctcaggttccagac
gtgcagccggtcagcttgagcagtgacaaagatgtcggacattacgaggcctgcagggtg
tgtgtggaagagctggctctctacctcaaaccaattagcggcactaaaggcgtggcgcct
ccgagtccaagcgcacttagccgacccatgcagaggaaactggtgacgctggtcaattgc
cagctggtggaggaggaaggccgagtgcgggccgtacgtgcgggccgttcgctgggcgag
cggacggtcaccgagctcattttgcagcatcagaacccgcagcagctgtccgctaacctc
tgggctgcggtgagagcacggggatgccaattccttggacctgccatgcaggaggatgct
ttgaagctcgtgcttttggctttggaggacggttcggcactatccagaaaggtgctggtg
ttgtttgttgtgcaaaagttggaagggcgcttccctcaggcttccaaaaccagcataggc
catgtggtgcaactcctctacagggcctcttgcttcaaggtgaccaagcgggatgaagac
tcctcgctgatgcagctgaaagaggaattccgcacctacgaagctctcaggagagaacac
gattctcaaatcgtgcacattgccatggaagctggcctccgcatctcgcccgagcagtgg
tcttctctgttgtacggggatctggtccacaagtcgcacatgcagtccatcattgacaag
ttgcagtctccagagtcgtttgcaaagagtgtccaggagctgaccatcgtcctgcagagg
acaggagacccggccaatctcaccaacctcagagctcacttggagttgctggccaacata
gaccataatacagatgatgtagcaccatcgtgggaggagctggaaaatgtcatgttggct
ataaagttggtggttcacggcctggtagaattcatccagaatttcagcaagaagagccac
gagaccccacaggtacatcaggtgaacagcaagtataagactagcatgtgcagagatctt
cgtcatcagggaggttgtccaagaggaactaactgcacctttgctcacacgcaggatgaa
ctggagaaatttcgtttaaggaacaaaaagagcggaagtgtaagtcgggcattccctccg
tcggggggtaaaaccttcatgctggagggcaccgtccacactgatggggctgcaggagtt
ggagaggaggacgtcctgacagatggagatgctcactcacaactcatctccaaaggagct
gacaacatggaaggcattaagacagccgtgcccagcgaatccattggggcgagtggctca
aacgggctgagtggcaccagtatgactttactgggctcagctgaacaaaagtccatgtct
ccgcctataactcccgtcagccactcttcagcgtcatcccctttgaccaccttaggacgg
gtggtcgatggtagcggggggccagcgcccaaacatggtggtcccctcatgctgcgagca
cctcacccttctcaggcctcggagctgttctaccaggagcagcaatctccgtacgagaca
gcccgctaccagccgaacggttcctactacccatctcctctccaccctccacacaaaccc
tgcatggctcgcttcctcagatcgtccaacgtcccagaatcctctctgcctccgccgtcc
tcctttcacggcgagcctcaaataccccatcaagcaccgtcctctccttccgccggctat
ccgccgagggagcgcatgagacccgccgtcttccaccaccaccaccaccctggccagcct
cagtatggacctctcacttccgcccatggagtttatacacctctctatgacagcagacga
gtgtggaggcctcagttgtaccatcgagaggacgccaggagtaactcgttgcctccagag
gtgctgcattcttctgtctaccagcctccactcagggagagattcaactccctagacagc
aacttctgctctggatccgagcaccgtgcagcgttgcacagggagtacggccgtgttcct
ctggtctacgacgacccgttccgacgtaagcaagagcagtgggcgcaccatcaccaccac
cattaccatcatcatcacagcaccagcaggccctcgcagccctcagccatcttcaacatt
gatttgggacctgagcacgtggagagcagtggaggtcggtgcatgggttgccgtttcaga
ggcgaggagagcttggcgcactattcgccgtggtcctgcggctccaccgtcggaccctgt
ctcagcccctttgagcccgaggcgatcacaccagctgcatcccactcagccttggagcag
tcggagtcggacggctgcggcggtggagttgttagcagcggtggcgtcgcaaagcgctgg
ctgcactcgttagatcactacaggagagtgaatgaagaggaccccattattcccttcagc
gagggtcccatcatatccaagtggggggccatatccagggcggcccgctcgggctatcac
accaccgatcccgtccaagccagcgcttgccagggtggtgccagcaccatgcccgtcaac
tttaaagattacaactgccacttggatcacagtgaatacaggtggagctcaagaggatcg
gattcttccagccactccagtttcctcgaaagtgagcagctttgtcgacattcgtccagc
gagaaaattgcatgcgaaccgcaaagccaccagaccgccttcagccaggatcgagagcat
aaggagagtgagcgagatattgagcttgagctctgcgctctggacatggaggacacggaa
ccgcaggacatcaagtctcaggattctttggagctggcatattccgaggatgcttctcac
ctcctcccaccgaattgctcctctccgcttgaggaacaacatgctgaggatcttccaccg
gacaggatggacacttacctgcttaaaaagatggccttcaggaagtcactatctcctgta
ggcctggtgtccggaggattggccgtcgggaagctggtgctgcggacgggaacgccccga
cccggcggtggcgactcctgtcccgaaacgcccggggcggagatgctgctcagcggaagc
taa
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