Syngnathus scovelli (Gulf pipefish): 125980233
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Entry
125980233 CDS
T08785
Symbol
npas4a
Name
(RefSeq) neuronal PAS domain-containing protein 4A
KO
K26457
neuronal PAS domain-containing protein 4
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125980233 (npas4a)
Transcription factors [BR:
sscv03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
125980233 (npas4a)
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Gene cluster
GFIT
Motif
Pfam:
bHLH_NPAS4
PAS_3
PAS_11
HLH
Motif
Other DBs
NCBI-GeneID:
125980233
NCBI-ProteinID:
XP_049595316
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All DBs
Position
1:complement(23268012..23274305)
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AA seq
918 aa
AA seq
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MYRSTKGASKARRDQINTEIRNLKDLLPISDADKAKLSYLHIMSLACMYTRKSVFFSPPE
AANASEEPSARFLSLPELSDLMQALPGFLMLLTAEGKLLYLSDAVSDHLGHSMVDLVAQG
DSVYDIIDASDQLTVRNHLSSAASPEMDRLFRCRFNTSKSVRRQSAGNKLVLIRARRLSV
PTASSAAVGSYWTSNPVWVCFCSPLESHPVRSGLESTSAGPPVADANLFLEGFHSQHGRD
LRLQAAHESVRTYLGYDVATLRSRSWYGLLHPNDLAHASAQHRSLLQEGGEGRGEMVVRV
QAQDQTWVWLYMVLQLQPGDVPVASSNYVISESEAWSVRQQLTSEQTQLSLVLSSGPPLQ
ESLQSPDTLSSPDQVFTPGSSGLSGQSFDFSTAGCSVASSDERASSAAEAMQTEEEPRSS
ISSLEEEAFFQAPPVRSSSAAPSPTPVTVETVSDLDFLTQNILMPPSFELDPPLPALPLP
LPPIPTSQAQQTKEFVCTPPYTPHIGGASFPFEEPHFSFDPTGTTTPPPSATTATATTSV
AASSVSSAPPPTTTGSSPTPPTTLSTKLPLSLPHPSTELLFAVDPCCGALYEKLPPTPDS
PGDGDCTVMTLPEVRGPLYVDVPLRPLQCPPEGLLTPEASPGKQPCLSFFSLEREREKER
AEISLLAQHISSLAEGFYLDPLLSKLSPTSLSNPPSPFLAEMVDSVQALREFYPIKAWRG
LDIPMFLEDDTSLFEESILDTLLQDVPPESPSPIHIPDASSPVSPPTPVCWHQASQFEGV
GQFCSAQSAQPNSADGCGESDEVAMEEESAEEAAEMEVALSPVSSCSSIPTSPPLILTSS
PRPVTTVASAGVVEAVSPAAAASCTQSLLEELAVREPMFGAGASIAPGLGQQPELYQLQC
HPSPQCFHKDGSGSIPPF
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgtaccgctcaaccaaaggagcctccaaggctagacgggaccagatcaacaccgagatt
cgcaacctcaaggacttgttgcccatctctgacgccgacaaagccaagctgtcatacctg
cacatcatgtcactcgcctgcatgtacaccaggaagtctgtcttcttctcgccgccagag
gctgcaaacgcatcggaggagccgagcgctcgcttcctgtccctgcccgagctgtccgac
ctcatgcaggctctcccgggtttcctcatgctgctcaccgccgaggggaagctgctctac
ctgtccgatgccgtctccgaccacctgggacattccatggtggacttagtggcgcaagga
gacagcgtgtatgacatcattgatgcttcggatcagctgaccgttaggaatcatctgtcc
agcgcagcctccccagagatggatcgcctcttccgctgccgtttcaacacatccaagtcg
gtgcgcaggcaaagcgctgggaataagctggttctgattcgagcgcgccgcctgtccgtg
cccaccgccagcagcgctgccgtcggatcctactggacctccaatcccgtctgggtgtgt
ttttgctcacctttggaaagccatcccgtccgctctggactggagagcacatccgccggt
ccaccggtggccgacgccaatctcttcctggaaggctttcactcccagcacggccgagac
ttgaggctgcaggctgcgcacgaaagcgtgcgcacttacctgggctacgatgtggcgacg
ttacgctctcgctcctggtacggcctcctccatccaaacgatttggcgcacgcctccgct
cagcaccgcagcctgctgcaagagggaggagaaggccgaggcgagatggtggtgcgcgtg
caggctcaggaccaaacgtgggtttggctctacatggtcctccagctgcaaccaggagac
gtccccgtcgccagcagcaactacgtcatcagtgagtcggaggcctggtcagtgcgtcaa
cagctgacctcagagcagactcagctcagcctggtcctgagttcaggtccgcccctgcaa
gagagcctccagtcccccgacaccctgtccagccccgaccaggtgttcacccccggcagc
agcggcctgtcaggccagtccttcgatttcagcacggcgggctgcagcgtggcctcctcg
gacgaacgggccagctcggcggccgaggccatgcaaacggaggaggagccccgctctagc
atctcctccctggaggaggaggccttcttccaggcgccccccgtgcgcagctcttcggcg
gccccctcgcccacaccggtcacagtggagacggtgtccgacttggactttttaacacag
aacatcctcatgccgccctccttcgagctggacccccctcttccagctctccccctaccg
ctcccgcccatccccacctcacaagctcagcagactaaggagtttgtgtgcacacctccg
tacaccccccacattggaggggctagcttcccgttcgaggagccgcacttcagctttgac
cccacgggtaccaccacgccacctccgtctgccaccactgccacagccacaacctccgtg
gctgcatcttctgtttcctctgcgcccccacccaccaccaccggctcaagccccacaccc
cccaccaccctgtccaccaaacttcccctcagccttccccacccctccacagaactgctc
ttcgccgtggatccctgctgcggagccctctacgagaaattgccgcccacgccggacagt
ccaggagacggcgactgcacggtgatgacccttccagaagttcggggtccgctctacgtg
gacgtgcccttgaggcctcttcagtgtcccccggaggggctcctcacccctgaggcgtcc
cctggaaaacagccttgcctttccttcttctccctggagagagagcgggagaaggagagg
gctgagatctccctgctagcccagcacatcagctccctggcggaggggttctacctggac
cccctcctgtccaagctgtccccgacatccttgtccaaccctccgtcccccttcctagcc
gaaatggtcgattcagtccaagcgcttcgggagttttatcccatcaaagcgtggcgaggc
ctggacattcccatgttcctggaggacgacacctctctgtttgaagagagcatcctagac
accctcctccaagacgtgccacccgagtccccctcgcccatccacatcccggacgcttcg
agcccagtctctcctccgacaccagtgtgctggcaccaagcctcccaatttgagggagtg
ggccaattctgtagcgcccaatcggcgcaacctaactcggcggacgggtgcggggagagc
gacgaggtcgccatggaggaggagtcggcggaggaagccgccgagatggaggtggcgtta
tctcccgtgtcttcatgctcctccataccgacttctcctccactcatcctcacctcctca
ccgaggcccgttaccaccgtagcctccgccggcgtggtagaggcggtctcccccgcagcc
gccgcctcctgcactcagtccctcctggaggaactggctgtgcgggagcccatgtttggg
gcaggtgcctcgatcgcccctggtttagggcaacaacctgagttgtatcaactccagtgt
catccatcgccacagtgcttccacaaagatgggagtggaagcatccctccgttctaa
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