Syngnathus scovelli (Gulf pipefish): 125980492
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Entry
125980492 CDS
T08785
Symbol
lrfn5a
Name
(RefSeq) leucine-rich repeat and fibronectin type-III domain-containing protein 5
KO
K16358
leucine-rich repeat and fibronectin type-III domain-containing protein 5
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
125980492 (lrfn5a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sscv04515
]
125980492 (lrfn5a)
04990 Domain-containing proteins not elsewhere classified [BR:
sscv04990
]
125980492 (lrfn5a)
Cell adhesion molecules [BR:
sscv04515
]
Immunoglobulin superfamily
SALM family
125980492 (lrfn5a)
Domain-containing proteins not elsewhere classified [BR:
sscv04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
125980492 (lrfn5a)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
Ig_3
I-set
LRR_5
LRR_4
LRR_1
ig
LRR_9
Ig_2
Ig_VEGFR-1-like_5th
C2-set_2
fn3
C2-set_3
FN3_DSCAM-DSCAML_C
Rop
Motif
Other DBs
NCBI-GeneID:
125980492
NCBI-ProteinID:
XP_049595659
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All DBs
Position
14:14984376..15024004
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AA seq
851 aa
AA seq
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MERLFLFVMLAVAVAVGAQICPKRCVCQILSPNLATLCAMKGLLFVPPNIDRHTVELRLA
DNFVTSVKRKDFANMTRLVDLTLSRNTISYITPHAFTDLENLRALHLNSNRLTRIGNDTF
SGMSKLHHLILNNNQLVLIHQGAFNDLLALEELDLSYNNLDSIPWEAIQKMTSLHTLSLD
HNMLDFIPEGTFSLLQKLNRLDVTSNKLQKLPPDPLFQRAQVLATSGILSSSTFALSFGG
NPLHCNCELLWLRRLNREDDLETCASPQHLSGRYFWSIPEEEFLCEPPLITRYSHEMRVL
EGQRVSLRCKARGDPEPAIHWISPDGKLVSNSSRTLVYVNGSLDILISTVKDTGSFTCIS
SNPAGEAHQTVDLVIVKLPHISNNTNNIQEPDPGSSDIHTSTSTRSGSNGSNATGDVKGG
VEKRVVSAEATSSTALINFNFQRNIPGIRMFQIQYNGSQDDSLVYRMIPPSSKSFLVNNL
AAGSQYDLCVLAIYDDIITSLTATRVVGCVQFTTESEYMRCHFMQSQFLGGTMIIIIGGI
IVASVLIFIIILMIRYKVCNPGDGVKGMSMSMTNVHSQTNGQRCSVTPSNSKHASIGLED
LSKKKSGGKDAATAAATTTATATTTLSSNSSLPDCSTDTSVLSQHWTTLGAEEQVKVGEE
RARASLSSTAATSSLGRPKRKPAPSKPGSACSNTSAAPENLPSACSRPPSASASASTASS
TPLDTLNTNRNNSTSLNQGQPPAPPPIGNPRPLPSVRYRETPILRRAPRARTKYQTLPVE
EGGRSRPRRRYSLSEGGSKTLAYNPGSAPKLGRTVRDKRSRSMSGMLFSKDGEGDSNRGR
CDSDWILESTV
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
atggagagacttttcctgtttgtgatgctggcggtggccgtggcagttggtgcacagatc
tgcccaaagcgttgcgtttgtcagatcctgtcacccaacctggccacactgtgtgccatg
aaaggtctgctatttgttccgccaaacatcgacaggcacacggtggaactgaggctggcc
gacaactttgtcaccagtgtaaagaggaaagactttgcaaacatgacgcggctcgtggac
ctcaccttatccagaaataccatctcctacatcacacctcacgccttcaccgatctggag
aacctccgagctctgcatctcaacagcaatcggctgacaaggataggcaacgacactttc
agtggcatgtccaagctccaccacctgattctgaacaacaaccagctggtactgatccac
cagggagcgtttaatgacctgctggcactagaagaattggatctcagttataataacctt
gattccattccatgggaggccattcagaaaatgacaagccttcatacgctgagtttggac
cacaacatgttggactttatcccagaggggacattttcattgctccagaaactcaaccgg
ctcgacgtcacctcaaataaactgcaaaagctcccgcctgaccctctctttcaacgagcg
caggttctggccacctcggggatcttgagctcctcaacctttgcactatcatttggtgga
aacccgctgcattgcaactgtgagctactttggctgcgaaggcttaaccgagaggacgac
ttggagacgtgcgcctcacctcagcacctctccggacgctacttttggtccattcccgag
gaggagtttctgtgcgaacccccgctcataacgcggtactcccatgagatgagggtcctc
gaaggacagagagtgtcactcagatgtaaggccagaggtgacccagagccagcgatacat
tggatatctcccgatggcaaactggtctcaaactcctccagaacgctggtctacgtcaac
ggaagtctggacatcctcatcagtactgtcaaagacacaggctcttttacctgcatctcc
tccaaccctgctggcgaagctcaccaaactgtcgacttggtcatcgttaaactcccgcac
atctccaacaacaccaacaacattcaggagcctgacccaggatcgtctgacattcacacg
tccacatcgacccgcagcggaagcaacggaagcaacgcgacgggcgacgtgaagggtgga
gtagaaaagagggtggtgagcgccgaggccacttcgtcgacggcgctgatcaactttaac
ttccagaggaatattccaggtatccggatgttccagatccaatacaacgggagccaagat
gattcactcgtgtatcgaatgatccctccatcaagtaagagcttcctggtcaacaacctg
gcagcaggaagccagtacgatctatgcgtgctggccatctacgacgacatcatcacctcc
ctgacggccacccgcgtggtaggatgcgtgcagttcaccaccgagtccgagtacatgaga
tgccattttatgcaatcccaattcctcggcgggactatgatcatcatcatcggagggatt
atagtggcttctgtgctcattttcatcatcatcttgatgatacgatacaaggtgtgcaac
ccaggagatggcgttaaaggcatgtcaatgtccatgaccaacgttcactctcagacaaac
gggcaaaggtgcagcgtgacccccagtaactccaagcacgcctccatcggattggaggac
ctgtcaaagaagaagagtggagggaaggacgccgccaccgccgccgccaccaccaccgcc
accgccaccaccacgctttcatccaactcgtccctacccgactgctccacagacacatct
gttctcagccagcattggacaacactcggggctgaagaacaagtcaaagtgggtgaggag
agagctcgagccagcctctcctcgaccgccgccaccagctcgctgggcaggccaaagcgg
aagcccgctccaagtaaaccgggctcagcttgctcaaacacctcagccgccccggagaac
ctcccgagcgcgtgctctcgccctccttccgcttccgcctccgcctcgaccgcctcttcc
actcctctagatacgctcaacaccaaccgcaacaattccacctcacttaaccaagggcag
ccgccggctcctccccccattggcaaccctcgtccacttccctccgtccgctatcgggaa
acgcccattctgcgccgggctccccgcgcccgcaccaagtaccagactctccccgtggag
gagggaggccggagcaggccgaggaggagatattccctcagcgaagggggctcaaagact
ctggcgtacaatccagggagcgcgccaaaattaggacgcacggtgcgggacaaaaggagt
cgatccatgagcggaatgctcttctccaaagatggggagggggactcgaatagagggcgc
tgtgattcggactggatcttggagagcacggtttaa
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