Syngnathus scovelli (Gulf pipefish): 125980522
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Entry
125980522 CDS
T08785
Symbol
pcdh11
Name
(RefSeq) protocadherin-11 X-linked isoform X1
KO
K16498
protocadherin delta 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
125980522 (pcdh11)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sscv01009
]
125980522 (pcdh11)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
sscv04515
]
125980522 (pcdh11)
Protein phosphatases and associated proteins [BR:
sscv01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
125980522 (pcdh11)
Cell adhesion molecules [BR:
sscv04515
]
Cadherins
Protocadherins
125980522 (pcdh11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
RET_CLD1
TMEM154
DUF6249
Motif
Other DBs
NCBI-GeneID:
125980522
NCBI-ProteinID:
XP_049595721
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All DBs
Position
1:complement(13572228..13710390)
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AA seq
1267 aa
AA seq
DB search
MNLASQTYVLVVFLTSTVFICRAQERDYTVKEEQPENVRIGNLRRDLDLNLDPNIRLSSP
LQFKPVYKTGDVPLVRVEANTGEIFTTNHRIDREKLCSGVFAEKRCYYEIEVAVLPDEIF
RLVKIRFLIEDVNDNAPLFQSTVINISIPENTAINTRYPVPSAFDPDVGINGIQHYELVK
SVGEFGLDIIETPEGDKWPQLIVQQNLDREQKDTFVMKIKVEDGGNPPKSSTAILQVTIS
DVNDNRPVFKHSELEVTVPENAPTGTSVVQLHATDADLGSNAQIHFTFSNQISASTKRHF
AIDSTTGLITVKQSLDRELTPVHKLIVLASDGSSTPSRATVTINVTDVNDNVPSIDTRYI
INLVNGTVLLSENAPLNTKIALITVTDRDADLYGKVTCYTDHDVPFRLKPVFNDQFLLET
AAPLDYETTREYAIRIVASDRGTPPLNTSAMVLIKIKDENDNAPIFPQPEIQLSIPENND
PSSQLIKISATDADSGHNAEIIYTLGPDAPDGFNIDRRSGILSVGKRLDREKQEKYSFTV
IGRDNGSSSLQSNVTVRLIVQDLNDNSPAFTHPEYNFYVPENLPLFGTVGLITVTDADAG
DNAVVTLSILNGKDHFIIDPQTGVIKPNITFDREQQSSYTFMVKAVDGGQPPSSSYAKVT
INVVDVNDNRPVFVVPASNYSYDLVRTTTTPGDVVTRVFAIDNDTGMNAELQYSITSSII
ITSRVSPRGLFSIDKATGNITLQEKIVAADQGLHRLVVKVKDLGQPESLQAIALIHLFVN
DTVSNATFIQEQLQKSMDTPLDRNIGDSELTPQANGYVIVVIAIIAGTMTVILVIFVTAL
VRCRQTPRHKVVQKGKQSGEWVSPNQENRQIKKKKKRKKRSPKSLLLNFVTIDESKPDDP
THEHVNGTLDLPVELEEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPTFQIKPETPV
APKKHHVIQELPLDNTFVVGCDTLSKCSSTSSDPYSVSDCGCQGGFKTPGQIATRQNAIQ
MPEMSFNSPSPICPHKEACQLGKITSVNTQRRVTFHLPDGSQESCSDSGLGDPEPSSTAS
TSQALPLSFPHEEYYEQTSPNSRTEGDGNSDPESTIEVNLQKALAEASETCTQECLILGH
SDTCWMPPTLTQFQSPTSGSPASTPTSVAISGTLPSFGFQQSCARGVKVNMGSLSTMDGR
HTLGRSVPKKDELDKVHNRPQFYNTLERHCSKKEDTVKVIPLASFSSPGKQTATGIGSGS
FLHEHQL
NT seq
3804 nt
NT seq
+upstream
nt +downstream
nt
atgaacttagcaagtcagacttatgtgctggtggtcttcctcacctccacggtcttcata
tgccgggcccaggagagagactacacagtgaaagaggagcagccggagaacgtccgcatt
gggaacctgcgcagggatctcgacctcaacttggacccaaacatcaggttgtcctcaccc
ctgcagttcaagcctgtctacaagacaggggacgtgcctttggtgagggtggaggccaac
acgggggagatctttacaaccaatcaccgaatcgacagggagaagctttgctccggggtt
ttcgcagagaaacgctgctattatgaaatagaggtggctgtcttgcctgacgagatcttc
cgactggtcaagatccgcttcctgattgaggacgtcaatgacaacgccccccttttccag
tccacggtcataaacatctcaatcccagagaacactgccattaacacccggtacccggtg
ccctctgcatttgaccccgatgtcggaatcaatgggatccaacattacgagctggtcaag
agtgttggagaatttggcttggacatcattgagacgcctgaaggtgacaagtggccacag
ttgattgttcagcagaacctagatcgtgagcagaaggacacctttgtcatgaagataaag
gtagaagatggtggcaaccctcccaagtccagcactgctattctgcaagtcaccatctcc
gacgtcaacgacaatcgtccggtcttcaagcatagcgagttggaagtcacggtaccggag
aacgcccctacgggaacatcagttgttcagcttcatgcaacggatgcagacctagggtcc
aacgcccagatccacttcaccttcagtaaccagatctctgcctcgaccaaacgtcacttt
gccattgacagcacaacgggactaatcactgtaaagcagtcactggacagggagctcact
cctgttcacaaacttattgttctggcaagtgatggcagttccacaccctccagggccacg
gtgactataaatgttacagatgttaatgacaatgttccctccattgacactcgctacata
atcaacttggtgaacgggactgtgcttttgtctgagaatgctcccctcaacaccaaaata
gcactcatcacagttacagacagagatgcagatctctatggaaaagtcacttgctacact
gaccatgatgttccatttcggctgaagcctgtctttaatgatcagtttttactggagaca
gctgctcccctcgattatgagacaactcgagaatatgcaattaggatagtggcctcggat
agaggaacgcctcctttgaacacttcagctatggttttaattaaaatcaaggatgagaat
gacaatgcgcccatcttcccccagcccgaaattcaactttccataccagagaataatgac
ccgtcctcacagttaataaaaatcagtgccactgatgcagacagcggacataatgcagag
attatttatacccttggccccgatgcacccgatgggtttaatatagacagacggtcagga
atcctttccgttggcaaacgactggacagagagaagcaggagaagtactcattcactgtc
ataggcagggacaatggttcatcgtccctacagagcaatgtcactgtcaggctaatcgtt
caggaccttaatgacaacagccctgctttcacacaccccgagtacaacttctatgtgcct
gaaaaccttccactctttggaactgtgggcttaattacagtgacagatgcggacgcggga
gataatgctgttgtaaccctgtccattttgaatgggaaagatcatttcatcattgaccct
caaacaggtgtaatcaagcccaatatcacttttgatcgagagcagcagagctcttacaca
tttatggtcaaggcagtggatggagggcaaccccctagctcttcctatgccaaggtcact
ataaatgtggttgatgtaaatgacaatcgccccgtgtttgttgttcctgcttccaattac
tcatatgacctcgtgcggaccaccaccacccctggtgacgttgttacaagagtgtttgcc
attgacaacgacacgggtatgaatgctgagctacaatatagcattaccagcagcatcatc
attacatctcgagtctcccctcgagggcttttttccatcgacaaagcaacaggcaacata
acactgcaggagaaaattgtggcggcggatcaaggactgcataggctggttgtcaaagtc
aaagatctcggccagccagaatcattacaagctattgcactcattcacttatttgtcaat
gacactgtttcaaatgctacgttcatccaagaacagctgcagaaaagtatggacacacca
ctggaccgaaacataggggacagtgagttaacacctcaggctaacggatatgtgattgtt
gtcatagctatcatcgctgggactatgactgtcatcttggtgatatttgtcactgccttg
gtgcgctgccgacagacacccagacacaaagtggtacagaagggcaagcagagcggcgag
tgggtgtcacctaaccaagagaaccgtcaaatcaaaaagaagaagaagagaaagaagcgc
tccccaaagagcctcctcctgaactttgtgaccatagatgaatctaagcctgacgacccc
acacatgagcatgttaacggtacgctggatctccctgtggagctagaggagcaaaccatg
gggaagtacaactgggccaccacacccaccaccttcaagcctgacagcccggacttagcc
aagcattacaaatctgcgtcccctcagcctacatttcaaatcaaaccggagactccggtg
gccccaaagaagcatcacgtgatccaggagctccctttggacaacacatttgtggtgggc
tgtgacacgctctccaagtgctcatcgacgagctccgacccatacagtgtctcagactgc
ggctgtcagggaggattcaagactcctgggcaaatcgccacccgacagaatgcgatccaa
atgccagagatgtcgtttaactcgccatcgcccatttgtcctcataaggaggcctgtcaa
cttgggaagataacatctgtgaatacccagcgccgagtgacgttccatcttccagatggt
tcccaggagagctgcagtgacagtgggctgggtgatccagagccaagtagtacggccagt
acctcccaggcccttccgctcagcttcccccatgaggagtattacgagcaaacatcacct
aacagtcgcacagagggagatggaaactcagacccggaatcaaccatcgaggtgaacctc
cagaaagctttggctgaggcgtctgagacctgtacccaagagtgtctgatactgggccac
tctgacacttgctggatgccaccaaccctcacccagttccagagtccgacaagcggaagt
cccgcctccacccctacctctgttgccatctccggtacgctcccctcttttggcttccag
cagagctgtgcccgcggagtcaaggttaacatgggcagccttagtaccatggatggccgg
cacacgttgggaaggtctgtgcctaaaaaagacgagctggacaaagtacataaccggccg
cagttctacaacaccttggagagacactgcagtaagaaggaggacactgtcaaggttatc
cccttggcgagcttttcatctcctggaaagcagacagcgaccggcattggtagtggctcc
ttcctacatgagcaccagctgtaa
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