KEGG   Syngnathus scovelli (Gulf pipefish): 125980607
Entry
125980607         CDS       T08785                                 
Symbol
larp1b
Name
(RefSeq) la-related protein 1B isoform X1
  KO
K18757  la-related protein 1
Organism
sscv  Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:sscv00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sscv03019]
    125980607 (larp1b)
Messenger RNA biogenesis [BR:sscv03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     125980607 (larp1b)
SSDB
Motif
Pfam: LARP1_HEAT La
Other DBs
NCBI-GeneID: 125980607
NCBI-ProteinID: XP_049595903
LinkDB
Position
14:complement(5384596..5394420)
AA seq 1097 aa
MSSELESGHLDSSLTALPSAAASSRGAEQEKPNPHNNNPSEAERAAEVGVEERRAEQGDC
EPSLDDDAVAKKVVEAPPPKVNAWTRRTTSRVPLHSVHSSASQDRDQQNALKVVRASKPR
TRKSSKSGDFGDITNWPTPGELAKERQQNVVNNNSSSGGGSNANKKPPSSRRDKDKKRER
PERKSESSHDGGGGESKENCETQPRAEPPAVDGDAKPGQDVKTASPKKRGGNKRKWVSLP
LEDATQEGSSDGGPAGTPGGGGPAGTLSGGGPAGMLGSSGTPGGGSGTPGGGSRTPGGGN
GTPSGGPAYSDMEPGSTSPDPTSPSHALQSSNNNRPQDTGRTWRRETRDLAESDSGSRGG
VRGRGKGRGRGRGRGRGRFEYSQGYREGTDSTASEFIGGGMVYYYDNGNKVQMYTVDEKL
LKEYIKRQIEYYFSLHNLERDFFLRRKMDTQGFLPISLIASFHRVQALTTDVGLIVEALK
SSKEVEVVDDRVRCKAEPERWPIPAPPVVGSPRTDFSQLVHCPEFVPRQSIANAVSLNTK
EAATEPTASQDPADEPQPASQEVAPSSDAPADTWIQVEKRHRHASGKAKERGEAPPPLQQ
QRAAPEAEQEELDFMFDEEMEQMAPRKNQFSDWSEDDDSDYELDDQDVDKILIVTQTPPY
LRKHPSGDRTGNHESRAKLTADLVKAINDGLYYYEQDLWKGAEQADCTKQEVENFKKLSV
ISQDEFDTLTPKVAVDPDQEAPAPPTAGSAETEMARSLPKTVLESPGAHQARTPRTPRTP
GRQDPTKAPRFYPVMKESGAVDGQMPRKKKTRHSSNPPQEAHIGWVMDSREHRPRSASIR
HSLSGPPSHNSSNASPSEGAPPIGGYGCTPQSLPKFWHPSHELLRDNGFTQQGYHKYRRR
CLNERKRLGVGQSQEMNTLFRFWSFFLRDNFNRKMYEEFKQYALEDAKDNYRYGLECLFR
YYSYGLEKRFRLDLFKDFQEETLRDLERGQLYGLEKFWAFLKYSKMRNQTIDPKLQEHLS
QFKNLEDFRVVQPPIGEEGGRRRCHSSSAGDDGRRHRHPSNSTSKPVQASSKAPPTHHKD
GGAQKKVNEPKARKDME
NT seq 3294 nt   +upstreamnt  +downstreamnt
atgtcaagcgagctggaaagcggtcacttggactccagtttgacagcactaccgtccgcg
gcggcgagctctcgcggagccgagcaggagaagccgaacccccacaacaacaatccctcg
gaggctgagcgggccgccgaggtaggcgtggaggagcgacgagcggagcaaggcgactgc
gagccgagcctcgacgacgacgcggtggccaagaaagtcgtcgaggctccgccgcccaaa
gtcaacgcgtggacccgcaggacaacgagcagggtgccgctccacagcgtccactcgtcg
gcctcacaagacagagatcagcaaaacgctctgaaggtcgtccgtgccagcaaacccaga
acccgaaaatccagcaagtcgggagactttggcgacatcacaaactggccgacgcccggt
gaactggccaaagagcggcaacaaaatgtggtaaacaacaacagcagcagcggcggtggc
agcaatgccaacaagaagccgccgtcctcccgccgggacaaggacaagaagcgggaacga
cccgagcgcaagtccgagagcagccacgacggtgggggaggcgagagcaaagagaactgc
gagacgcaacctcgggcggagccgccagccgttgacggagacgccaagccgggacaggac
gtcaagacagccagccccaagaagagaggaggtaacaaacgcaagtgggtctccctgccg
ctagaggacgccacacaggaaggcagcagcgacggcggccctgccgggacgcccggcggt
ggcggtcctgctgggacgctcagcggcggcggccccgctgggatgcttggcagcagcggg
acgcccggtggtggcagcgggacgcccggtggtggcagcaggacgcccggtggtggcaac
gggacgcccagcggcggccccgcgtactctgacatggagcctggcagcacctcacccgat
ccgacgtcacccagccacgcgttgcagagcagtaacaacaaccggccgcaggacaccgga
aggacttggaggagggagacgcgcgacttggcagagagcgatagcggctcccgcgggggc
gtccgaggccggggcaaaggacgaggacgcggcaggggtcgtggtagaggtcgctttgag
tactcgcagggctaccgcgagggaacggatagcaccgcctcggagttcatcggcggcggg
atggtttactactacgacaacgggaacaaagtgcagatgtatacggtggacgagaagctt
ctcaaggagtacatcaaacgacaaatcgagtactacttcagcttgcacaacctggagcga
gacttcttcctaaggaggaagatggatacgcagggcttcctgcccatctcgctcatcgcc
agcttccaccgcgtgcaagcgctcaccactgacgtgggcctcatcgtagaggccctgaaa
agcagcaaagaggtggaggtggtggacgaccgggtccgatgcaaagcggagcccgagcgc
tggcccatccccgcaccacctgtcgtgggctcgccccgcaccgacttctcgcagcttgtt
cactgtcccgagtttgttccacggcagagcatcgccaacgccgtttcattgaacacgaaa
gaggctgccactgaaccgactgcgtctcaagaccccgcagatgagccccaacctgccagc
caggaagtggcgccctctagcgacgcccccgccgacacctggatccaagtggagaaacgt
caccgacatgcctctggcaaagcaaaggagcgtggtgaggctccgccccctctgcagcag
cagcgcgctgccccggaggccgagcaggaggagctggacttcatgtttgatgaagagatg
gagcagatggcgccgcgcaagaaccagttcagcgattggtcggaagacgacgactctgac
tacgagctggatgaccaggatgtggacaagattctgattgtcacgcagacgccgccgtac
ctgcgaaagcaccccagcggcgaccgcaccggcaaccacgagtcgcgcgccaagcttacc
gccgacctggttaaggccatcaatgacggcctttactactacgagcaggacctgtggaag
ggagccgagcaggccgactgcaccaagcaggaagtggagaacttcaagaagctgagcgtc
atcagccaggatgagtttgacacgctcacgcccaaagtggccgtggaccccgatcaggaa
gcgccggccccgcccaccgccgggtccgctgagacggaaatggctcgctccttacccaaa
acggtgctggagtcacccggcgcccaccaagcccgtaccccgagaacgccgcgcactccc
gggcgccaggacccgaccaaggcgccccgtttttacccggtgatgaaggagagcggggcc
gtggatggacagatgcccaggaagaagaagacccggcatagttccaacccaccgcaggag
gcacacattggctgggtcatggactcgcgtgagcatcgcccgcgatctgcctccatcagg
cactcgctctctggtcctccttcccacaacagctccaacgcatcgccctcggaaggggct
ccgcccataggcggctacgggtgcacgccgcagtcgctgcccaagttctggcatccgtcg
cacgagctactacgggacaacggcttcacgcagcaaggctaccacaagtacagacggcga
tgcctgaatgagcgtaagaggctgggcgtcggccagtcccaagaaatgaacaccctgttt
cggttctggtccttcttcttgagggacaacttcaacaggaagatgtacgaggagttcaaa
cagtacgcactggaggacgccaaggacaactacaggtacggcttggaatgcctcttccgt
tactacagctacggcctggagaagaggttccgcttagacctgttcaaggacttccaggaa
gagaccctaagggacttagagagaggtcagctgtacggattggaaaagttctgggccttc
ctgaagtactccaagatgaggaatcagactatcgacccaaagcttcaagaacatctctcc
cagttcaagaacctggaagacttcagggtggtgcagccccccattggagaggaaggaggc
cggaggagatgccattcgtcatcagcgggggacgacggccggcgtcaccgtcacccctcc
aactctacctcaaaaccggtgcaggcgtcctccaaagcgccgccgacgcaccataaagac
ggaggagcccagaagaaggtgaacgagcccaaagcgaggaaggacatggaatga

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