Syngnathus scovelli (Gulf pipefish): 125980731
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Entry
125980731 CDS
T08785
Symbol
lingo2b
Name
(RefSeq) leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 2b
KO
K23533
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sscv04131
]
125980731 (lingo2b)
Membrane trafficking [BR:
sscv04131
]
Endocytosis
Lipid raft mediated endocytosis
RhoA-dependent endocytosis
125980731 (lingo2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
I-set
LRR_4
Ig_3
LRR_5
Ig_2
ig
LRRNT
LRR_Zer-1
LRR_9
V-set
Sp38
Motif
Other DBs
NCBI-GeneID:
125980731
NCBI-ProteinID:
XP_049596156
LinkDB
All DBs
Position
14:15059775..15079245
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AA seq
613 aa
AA seq
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MRRYRILAGGAVLLLLARLALSCPARCECSAQSKSVSCHRKRLTAVPEGVPIETRVLDLS
KNKLRVVTPDNFSSFHLLEDLDLSDNLISVVEIGSFRSQLALRSLNLRSNAIQLVPAGVL
SGLGNLTGLDLNHNRLVVLLDHAFQDLRKLASLRVGDNELVFISQRAFVGLSGLQSLTLE
RSNLSAVPTEALAHLHNLVELRMRHLSIALLKPFSFKRLSRLCRLELDYWPWLDSLPPLS
LHGLNLTQLFLTNTNVSAFPGAALRHLPYLTHLNLSFSRIEHIHQGELGHFPHLTELRLQ
GARLLSIEPDAFVGLVSLQLLDVSQNRLDSLERGVFASPDALQRLCLGGNPLVCDCRLLW
LLTSHKPPSLHILDLQPQCSAPEYLSGKTLRELKEPLVSRYMTCTEPRIGANATQLLMAH
EGQPARLSCAAEGAPRPSVVWITPHRRYVTAKSSGRVEVGADGTLEIKAAELHDSGVYRC
IASNPAGNASLSASLAVKSLGARDGSSNRSSNYMANSSSSGGSSSGSTWGNGTVLYNMTV
PIDIKTIIISTAMGCLSFLGVVVFCFLLLFAWSRGKGRHKSNFDIEYVPRKSNGASAEAA
ESSGPRRVNMKMI
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgcggcgctaccgcatccttgcgggtggggccgtgctgcttctcctggcccgactggcc
ctgagttgccccgcccgatgcgagtgctccgcccagagcaagtcggtgagctgccaccgc
aagcgcctcaccgccgtccccgaaggcgtccccatcgaaacgcgcgtcctggacctcagc
aaaaacaagctacgcgtcgtcacccccgacaacttctcgtccttccatctcctggaagac
ctggatctcagcgacaacctgatcagcgtggtggaaatcggatcctttcgctctcagctg
gctctgcgctcgctcaacttgcgcagtaacgccatccagctggttccggcgggcgtgctg
tcgggcctgggcaacctcactggccttgacctcaaccacaacagactcgtggttctgctg
gaccacgccttccaagatctgcgcaagttggcctccctccgggtgggcgacaacgaactg
gttttcatctcccagagggcctttgtgggattgagcggactgcaaagtctgaccctggaa
cgctccaatctcagcgcggtgccgaccgaggccttggcgcatctccacaacctggtggaa
ctgcgaatgcgccatttgagcatcgctttgctcaagccgttctcttttaaaaggctctcg
cgcctgtgccgcctggagctggattattggccctggttggacagcctcccccctctgtcg
ctgcacggcctcaacctcacccaattgttcctgaccaacaccaacgtgtcggccttcccc
ggcgccgccttgcgccacctgccctacctcactcacctcaacttgtctttctcccgaatc
gagcatatccatcaaggcgagctgggccacttcccgcacctgacggagcttcgtctgcaa
ggggctcggctcctttccatcgaaccggacgcgttcgtcggcctggtgtccttgcaactc
ctggacgtgtcgcaaaaccgcctggactctctggagaggggggtttttgcctcgcccgac
gccctccagaggctttgtctgggtggcaaccccttggtgtgcgactgcaggctgctttgg
ttgctgacgagccacaagccgccctccctccatattctcgacctgcagccccagtgcagc
gcccccgagtacctgtcgggaaaaactctgcgcgagctcaaggagccgctggtctctcgc
tacatgacctgcaccgagcctcggatcggagccaacgccacgcagttgctgatggcccac
gagggccagccggcccgcttgagctgcgcggccgagggagcgcccaggccttcggtggtc
tggattactcctcacagacgctacgtgacggccaagagcagcggcagggtggaagtcgga
gcggacggcaccctggagatcaaggcggccgagctgcacgacagcggggtgtaccgctgt
atcgccagcaaccccgccggcaacgccagcctgtcggcctccttggccgtcaagagcctg
ggcgcgagggacggcagtagcaacaggagctcaaattacatggcaaactccagcagcagc
ggcggcagcagcagcggcagcacgtgggggaacggcaccgtgttgtacaacatgacggtc
cccatagacatcaagactatcatcatatccacggccatgggctgcctgtcctttctaggc
gtggtggttttctgcttcctgcttctgtttgcctggagtcgaggcaaaggacgccataag
agcaactttgatatcgagtacgtcccgcgcaaaagcaacggggcctcggccgaagccgcg
gaaagcagcggcccccgacgagtcaatatgaaaatgatttga
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