Syngnathus scovelli (Gulf pipefish): 125980737
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Entry
125980737 CDS
T08785
Name
(RefSeq) neuronal PAS domain-containing protein 3 isoform X1
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sscv03000
]
125980737
Transcription factors [BR:
sscv03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
125980737
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Gene cluster
GFIT
Motif
Pfam:
bHLH_HIF1A
PAS_3
PAS_11
PAS
PAS_9
PAS_4
HLH
Motif
Other DBs
NCBI-GeneID:
125980737
NCBI-ProteinID:
XP_049596171
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Position
14:complement(5000806..5103556)
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AA seq
975 aa
AA seq
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MIRIFPDFSVQVTASAGAAGGGDGAPVGRMPVPGAINGSPQSVQGLPGYQQSDPYWERPA
NVGSCSAARPKSLHLAAGQQHTSSPWLQALRKEKSRDAARSRRGKENFEFYELAKMLPLP
GAITSQLDKASIIRLTISYLKMRDFANQGDPPWNLRVDAAPPNTSVKAIGGQRRRTPGAL
ASDIFEPHLGSHILQSLDGFVFALNKEGRFLYISETVSIYLGLSQVELTGSSVFDYVHPG
DHVEMAEQLGMKVPPGRGAAAALCRGTINEDAASSASSPSSPCPEAPEPAESSSPGNLSP
DDCLERSFFIRMKSTLTKRGVHIKSSGYKVIHVTGRLRIRMALTHGRSTPNQIMGMVVVA
HALPPPTINEVRIDCQMFVTRVNMDLKIVYCENRISDYMDVSATDIVGKRCYQLIHAEDV
DAIRQSHLDLMNKGQCVTKYYRWIQRSAGYVWIQSSATIAVNVKNAGDKNVIWVNYVLSN
HEYKNTPIDFGQMPNLPEKVSDSLESSDSDCESKENSDNKKAACKPGQSEHGTDVEANLQ
CRGRLQSSSEQEAKRRKEPETSSDDADSPDSDDSPDSDTAEPADAVSGAAADRMDGVLDG
LQIKVEHYSEADEHFYPSQSSSSEEEEERDGDEPASSGPEKLQSRKRRKLHKWDRTRGRK
LRLSSTLASPVPLMDATAAPDSLQLLGSPGGSTSAVLKIKTEMSEPINFDNDSSIWNFPP
NREISRNESPYSMTAKPATPGPLKQGGSLQVPIPDAALTPPATEGGAGARKPPYNGSSTP
ASLVLPSSGSSADPLSPPLSASPRDKRQDSPATTLATSSSSSSSLLCSGDLEVLQRLQAG
NMVLPLVHRVTVAPSGSTPPRVYTTGTIRYAPADVALAMAPGSLLPNASVNFVDAPGFSL
DPKTPMEMLYHHVHRLNMSAAAATGPFAGSPGATAGTAQVPAAAAANVFTTADGIFSTLP
FPIYTNGIQAQRKDN
NT seq
2928 nt
NT seq
+upstream
nt +downstream
nt
atgatccggatcttcccagacttcagtgtgcaggtgacggcgtcggctggtgccgcgggg
ggtggtgacggagccccggtggggcgcatgccggtgccgggggcgatcaacggaagcccg
cagagcgtgcagggactgccgggctatcagcaaagcgacccctactgggagcgtccggcc
aacgtgggcagctgttccgccgcccggcccaagagccttcacctggccgcaggacagcag
catacctcgtcgccatggctgcaggctctgcgcaaggagaagtcccgggacgcggcgagg
tcacggcgcggaaaggagaactttgagttctacgagctggccaagatgcttccactgccg
ggcgctatcaccagtcaactggacaaagcctccatcattcgcctcaccatcagctatcta
aagatgagggactttgctaaccaaggggaccccccatggaacttgcgcgtggatgctgcg
ccccccaacacctcagtcaaagccatcggcggccagaggaggaggacccccggcgcgttg
gcctcggacatctttgaaccgcacctgggcagccacatcctgcagtctctggatggcttt
gtatttgcactcaacaaagaaggccgcttcctctacatctctgagaccgtctccatctac
ctgggactctcacaggtggagctgacgggcagcagtgtgttcgactatgtgcacccgggc
gaccacgtggagatggcggagcagcttggcatgaaggtcccgcctggccggggggcagca
gcagcactgtgccggggcaccatcaacgaggatgccgcctcttcggcctcgtcgccgtca
tcgccgtgccctgaggcgcccgagccagcggagtcaagcagtcccggcaatctgtctccg
gacgactgtctggagcgttctttcttcatccgaatgaagtcgacgctcaccaagagaggc
gtccacatcaagtcgtcaggatacaaggtgatccacgtgaccggtcgcctgcgcatccgc
atggcgctgacgcacggccgctcaacacccaatcagatcatgggtatggtggtggtagcg
cacgccctgccgccgcccaccatcaatgaggtgcgcatcgactgtcagatgtttgtcacg
cgcgtcaacatggacctcaagattgtctactgcgaaaacaggatcagcgactacatggac
gtgtccgccaccgacattgtgggcaaacgctgctaccagctgatccacgccgaggacgtg
gacgccatcaggcaaagtcacctcgaccttatgaacaaaggccagtgcgtgaccaagtac
taccgctggatccagaggagcgccggctacgtttggatccagtccagcgccaccatcgcc
gtcaacgtcaagaacgccggcgacaagaacgtcatctgggtgaactatgtgctcagtaat
cacgaatacaagaacacgcccattgactttggccagatgccaaaccttccagaaaaggtt
tcggattccttggaatcctctgactcggactgcgagtctaaagaaaactctgacaacaag
aaggcagcatgcaagccaggccaatctgagcatggcacggacgtggaggccaatttgcag
tgccgcggccgattgcagagctcgtccgagcaggaagccaagcggcgaaaggagcccgag
acatctagtgacgacgccgacagtccggacagcgatgacagcccagacagcgacaccgcc
gagcccgctgacgctgtcagcggggcagcagcagacaggatggacggcgtcctggacggc
cttcagatcaaagtggagcattacagcgaggccgacgagcatttttatccctcgcagtcg
tcctcgtcggaggaggaagaggagagggacggtgatgagccggccagcagcggcccggaa
aagctccaaagccgtaagcggcggaaattgcataaatgggaccggacgcgaggcagaaag
ttgcgcctgtcatcgacgctggccagcccagtcccgctgatggatgccaccgcggcgcca
gactccttgcaacttctcgggtccccgggcggcagcacgtcggcggtcctgaagatcaag
acggaaatgtcggagcccatcaactttgacaacgacagcagtatctggaactttccgccc
aacagggagatttcccgcaacgaatcgccgtacagcatgacggccaagccggccacccca
ggacccctcaagcagggcggctccctccaggtccccattcctgacgccgcgctgacgccg
cccgccaccgagggcggggctggggccaggaagcccccttataatggaagctccaccccg
gccagtttagtgctgccctccagcggctcctcggcagatcccctatcgccgcccctctcg
gcgtcgccgcgcgacaagcggcaagactcacccgccacaactttggccacgtcctcatct
tcgtcatcttcgctgttgtgctcaggtgacctggaagtgctgcagcgcttgcaggcgggg
aacatggtcctgccgcttgtccaccgcgtcacggtggcgcccagtggcagcacgccgccc
cgtgtgtacaccaccgggaccatccgctatgcgcccgctgacgtcgcgctcgcaatggcg
ccggggagcctgctgcccaacgcctctgtgaactttgtggacgccccgggtttcagcctg
gaccccaagacccccatggagatgctgtaccaccacgtgcaccgtctcaacatgtcagcc
gctgccgccacagggccctttgcaggctctccaggggctaccgcagggacagcgcaggtg
cccgcagccgccgctgccaacgtgttcaccacagctgatggaattttctccacgctgccg
tttcccatctacacgaacggcatccaagcccagagaaaggacaactag
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