Syngnathus scovelli (Gulf pipefish): 125980978
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Entry
125980978 CDS
T08785
Symbol
srrm1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
sscv
Syngnathus scovelli (Gulf pipefish)
Pathway
sscv03013
Nucleocytoplasmic transport
sscv03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sscv00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
125980978 (srrm1)
03015 mRNA surveillance pathway
125980978 (srrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sscv03019
]
125980978 (srrm1)
03041 Spliceosome [BR:
sscv03041
]
125980978 (srrm1)
Messenger RNA biogenesis [BR:
sscv03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
125980978 (srrm1)
Spliceosome [BR:
sscv03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
125980978 (srrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
125980978
NCBI-ProteinID:
XP_049596683
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All DBs
Position
14:13669488..13677289
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AA seq
825 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKHKKLLKQLKFAECLDKKVDMTKVNLEVIKPWITQRVTEIL
GFEDDVVIEFIFNQLDDKHPDSKMMQINLTGFLNGKNAREFMRDLWPLLLSAQENIAGIP
TAFLEQKKEEIKQRQIEQEKLASLKKLEDDKKDARERAQSKSPRRRKTRSPSPRRRSPLR
RERKHSPSRSPRRKVPLPGGSSPPPPLMQLSTKPVEQPVEPDTAGRAIPEPVLQEPSSTS
ETVVEMAKADSVTEEKELPPEKAKIEERPKSREREKDSRKERPQRRSRSHSRHRKRRSRS
RSYSPRRRQSPRRRMSPRRRSPPRRPPPSSRNRPRRSPVRRRRSRSASSSGSSSSPSRSP
KKVIKRISNSPPRKQPHFPDASVSPPRKDRRSPSPRIMRGRGSASPARSSEEDKNEKGAT
SDSVQQRRQYRRQNQESSSAPFLVSDSGSSSSDEEASKRPKGGPVARNGDVKRRRSHSPS
PRRPQREASPRKRRSPSPGPRRRRSLTPVRRRRSPSPRRRSPSPPPRRRYSPPIQRRYSP
VAPLKRKLSISPVRRGSPGHKRRPSRSPKRRSSPIQRRRTPPSSTSPPRHRRSPKPTSVR
LSRDARSPAAAAAANRRSQSPANRSRINRDSISPARHFESSNQRKHSPLHSEKPIRRVSR
TPEPRNNQRLSVSPQPFRRVSSRSRSLSPRQAAVKHPAPTSASPSPSRSASASPALAKKA
SSGSGSRSPSKNSDVDGSAKKKKKKKEKKHKKDKKHKKHKKHKKERSVNAGSGDTQQNQG
GDEDGESRKESESEVEDTLDDLEKHLREKALRSMRKSQVSPSQMS
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
atggacgcggggttcttccgcggcaccagtgcggagcaggacaaccggttcagcaacaag
cacaagaaactgttaaagcagctgaaatttgcagaatgtctggacaagaaggtggatatg
accaaagtcaacctcgaagtcataaagccatggattactcaacgggtgacagagattttg
ggattcgaagatgatgtcgtcatagagttcatatttaaccagcttgatgataagcacccg
gatagcaagatgatgcagattaacttgacgggtttcctgaatggaaaaaatgccagagag
ttcatgagagacctctggcccttgttgctgagtgcccaggagaacattgctggcatccca
actgcgtttttggaacagaagaaagaagagattaagcaaagacagattgaacaggagaag
cttgcttctctgaagaagttagaggacgacaaaaaggatgcaagagaaagggctcagtca
aagagcccgagaagacgcaagacgaggtccccgtcgccacgacgcaggtctccattgagg
cgcgaaaggaaacatagcccttcgcgctccccaagacgtaaagtgccgctacctggtggg
agttcacctcctccacccttgatgcagctttccacaaaacctgtggagcagccagtagag
cctgatacagcaggaagagccataccagaaccagttctccaagaaccgtcttccaccagt
gaaactgttgtggagatggcaaaagcagactctgtgactgaagagaaggagcttccacct
gagaaagccaagattgaggagaggccaaaatccagggaaagggagaaggacagtaggaag
gaaagacctcagcgccgctcccgttctcattctcgccaccgcaaacggcggtcccgttca
agatcttattctccacgtagaagacaaagtcccagaaggagaatgtcacctcgtagaaga
agcccacccagacggccccctcccagctccagaaacagacccaggcgttctcctgttcgc
aggagacgatctcgctcagcttcatcctctggcagcagctcttctccctcccgctcacct
aaaaaagtaataaaaagaatatccaactcgccaccacgaaaacagccccactttcccgat
gcctccgttagccctcccaggaaagacaggcgatcaccatctccacggatcatgaggggc
agagggtcagcatctcctgccagatcatctgaggaggataaaaacgagaaaggcgcaact
tcggattctgtgcagcagagacgacaatatcgtagacagaatcaggagtcatcttcagca
ccttttttggtttcagattcaggatcttcctcctcagacgaggaagcgtccaagagacca
aaaggaggaccagttgccagaaatggtgacgttaagaggaggcgtagccattctccctcc
ccaaggaggccacagagagaggcctctcctaggaaaagacgttcaccatctcctggtcct
cgcagacgccgttcccttactcctgtaaggcgtcgcaggtccccttcaccaagacgaagg
tctccttccccacctccccgcaggcgttattcgcctcctatccagcgtcgctacagcccc
gtagctcctctgaagaggaaattatctatctctcctgttagacgtggttcaccagggcac
aaacgccgtccttctcgatcccccaaacgccgaagttctcccatccagcggaggcgcaca
cctccctcgtcgacatccccgccgagacacagaagaagccccaagcccacttctgtccgc
ctaagtcgtgatgcccggtcccctgctgcagcagcagcagcaaatcggcgctctcagtca
cctgcaaatcgcagtcgcattaacagagattctatcagtcctgccagacattttgaatcc
tccaaccagcggaaacactctccattacacagtgaaaaaccaatccgaagagtctcacgc
accccagagccacgcaacaatcagcgactttcagtgagccctcagcctttcaggagagtt
tcttccaggtctcgatccctttctcctcgacaagctgctgtgaaacacccagccccaaca
tccgcttctccctcaccatctcgatccgcaagtgcgtcccccgctctagccaaaaaggca
agcagtggatccggtagccgatcacctagcaagaattccgatgtcgatggcagtgccaag
aaaaagaagaagaagaaggaaaagaagcataagaaagacaagaaacacaagaagcacaag
aagcataagaaggaaaggagtgtcaacgccggtagtggagatacccagcagaaccagggt
ggggatgaagatggtgaatcaagaaaggaatcagagagtgaagtggaggacacgttggat
gacctggagaaacatctgcgagagaaggccctacgctctatgagaaagtcgcaggtgtct
ccatcacagatgtcctaa
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